rna4314, rna4314 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4314
Unique Name	rna4314
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4930
Alignment location	CM002463.1:270044..271021 +

Link to JBrowse

Properties


Property Name	Value
Product	zn-dependent protease with chaperone function
Orig transcript id	gnl\|cribi\|Naga_100031g20.2250.mrna
Orig protein id	gnl\|cribi\|Naga_100031g20.2250
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:270044..271021 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g20	gene4157	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4314	rna4314-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26367.1	cds4304	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:270044..271021+
coding sequence from alignment at CM002463.1:270044..271021+

mRNA sequence

>rna4314 ID=rna4314|Name=rna4314|organism=Nannochloropsis gaditana|type=mRNA|length=4930bp
TCAATGATAGGTTCTTGTTTCAGGGTGGGCTGTAGAAGGGGAGGAAAAGC
AAGGAAGTAGTTCTTCCCACTGGCGGGGAAATCCCTGATACGTCGCTCCA
CACGCGCTCTCCGGGATTTATTTCAGACCTGTGAGTCTCATTTCTCTTGC
GTGTTTTTCGAGGCGCACCATTCATTTGCATAGTCCTTCTATTTAGAATG
AGTTCACTTGACAGGCTAGGTTCTCCGACAAACCAGATTTTGTCATGCTA
TTTTTCTTGCATTGCACTCATACCCCCCCGCGCGTTTAAGCTTTGCGAGG
GGTCAAAAAAGCTACCCTTAACATGATAGACACCGAGAAGAATATATTTG
TTTAAATGAAAGCACCTTAAAAAAAATTCTACGTAATATATGAGGACAGG
TTAAGCTTTTGGATGCTTTCTATGCGGCGTCTTCGTGAGGATGACGATGG
GACTGAAAAAGCAGTTACAATTTCACGTCTTATATTTTTGGGCTGAGACA
TGCCGCATCCGCTTGGGAAGCTACCACTTTTTCAGTTTTACAAATTCTTT
GGATGAAATTACGCCCGTGACTCTCTTTCAAGCGCAGCACCCACCAAATT
GGAGGCTCTCATGGCTGTCTGTGCTGACGCTTCCCGTCTTCGCCCCTGCA
AAAGCGCGTCTTTCGGCGAGATGACCTTTTGGCGGACACGGGACGGAAGC
AAGATGGACTGGGTACCATCCGGAATCCGTTCCCCTTTCTCCTTCTTTAG
ACGCAAGGCTTGCTGTTGCAAGGCGCGGGCCGCGGGGACCTGGGCCTGTA
GACGATTGATCCGGTTCTGGTGGGAGGGATGCGTCGACAAGAATTCTGGC
AGACCCACTTGACTATTCTTTCCGCTGCCGCCTTGGGCCCCGTCTTCCAT
GCGCTTCCACACCTCTACCGCCTCTTGCGGGTCGTAGCCGGCCAGGGCCA
TGAGCTCCATCCCCAGCTTGTCCGCCTCCGTCTCGAGCGTGCGAGAAAAG
GGCATGTCAATGACCAAGGCCTGCAAGTAGGGCAACACCGTGTACTGGAT
GTACCGGTGCGAGGAGGCACCCAGGAAGCCGGCCGTGAAGTCGAGGAAGA
AAGAGCCGAGGCATAAGACGCCTATCTTCTCCACGGAATGCCGGGCCAGG
GCGTGGGCGACCTCGTGGCCCAAGATGAACGCCAAGCCGCCGCGAGTCTG
CACGTGTTCGAGGAGACCGGTGTAGACGAAGATGTTGCCGGAGGGCAGAA
CGAAGGCATTTACCACGTCGGAGTCGATGACGCTCACTTCCCAATGCCTG
TCTGCGATACGAGCTTCGAGACGCTCTTTTTGCTCCGTCGTTTCGGCCAA
AATGCCGCTTTGCCCCTTCACGCACTGCTGCAGACTTCTTAGCAATTCGA
CGGCCACGTCGTGCACAAGCAACGTCTCTGGTGCCGACGCTGTTAAAATA
GCATTCTTTTCTTCTTTGTATACTTGCGATGCTGCCATGGCTCCCAATTC
CATTTCTTGCTCTTCGTCGACGAAGACGAGCTGCATCCTATGTGTCAACG
GTGCCTCCTCCAGGTGTGAAACGACGAAGACTGTGCCCAATCCTGTAGGA
ATGAGCACGAGTCCCGCCGCAATCGCAGGCGCAGATTTATGTATGCCTCG
TGCACGGATTGCTCGTGCCATACCCCCAAGAAGGCGACCTGCTAGTCGAA
GAAGGACTTGTAGCTGCTCAGGGGACAGGGCATTGCCCCGCCCGAAGGAC
CGCCTTCCCCGCGTCGTGTAGGATCGGGTGGGACACCGCGCGGAAGGTAA
GGGGAAATAAGGGTGCATGCGTCCTTGCCTTGTCCACAGCGACGCGGTGC
GCACGCATAATTTGGGCCCAGATTGCCATATAGGACGGTATGCACATCGG
GAGGAGTGTCCTGACCAGGTCGAAACCCGTTCGAAGAGGCAAGCACGCTG
TCGTAGGCCACGTCTCACAAATTGTGCGGACATGAACGGACTCCCTGTAC
GGTTCAAGTGTCCATGTGCTGGTATCAATGCGTGAACATGTTGTCAGGAA
TGTATACATTCCCGTGAAAGCAAAAGCGGGCTTTTGAGCGGGGGGCGAGT
TGCTTCTTCGGCGAGGTCACGCATGCCCTTGCTACTGATTGCACTCATAT
GCCAGACCTTGATGTGGCGGCGTACGAGCGGAGCCCATTTTCTACGAACA
TTACTCTGACCCTGCTCCAAGACTCCTCTCCGCGCGTGCACGGTGATCGA
AAAAGGCATTGGAGCAAGGATTTATTGTACGAATCGAGTCACGAAGCCAC
TGACCCCCCCCAAAAAAAAATCCTATATCAGTACATATACCAGCAGACTG
TCTATCACACAACGAGGAGGTACAGATATGGACTCAACGGATGGAAATGA
CACAAATGGTGATACCCCTGCAGCTGCCACCGACAATGGTACAGCTTTGT
GTGACCAAACTGCACCATCCACCAGTGCAACGGAGGCGATTGCGCTGTCC
GCGAGGCAGCCTGATCAACTTCGCTTGGTGGTGTCGGGCTTCCAAAAGTT
CATGAATGCAAAGGAGGTGACGAAGATTCTTGCCCAGGGCAAGATTGACT
ACGAGTCATTGAAACGTGCAGTCTCCACAACAGTAGCTGTGTTGCGTTTC
GCCAGCGTCGAGCAACGCGAGAAAGCTGCTACCGATTTGGTAAAAATTTG
TGTAAAAGGGAGGCCGCTGCGGACGATGGTACCAAAGCCAGAGGAGCGTC
GAATATTTCATCAACAGGATCACGAGCAGTGCGGGTCAAAGCGAAAAGGA
AAATTGAACGCGCCGCGCGAGCCAGACGGCAAGCGTGGAAGAGAGGGGAG
CGTCGAGGGAGGTGGAGACACTCTAATGGAAGAGAGTGTCAAGACCCTGG
CGGACGTAGTCACTCCTTTTTTGTCTCTGCCTTACATGGAGCAACTTCAG
CAGAAAGAGCGCGACATTGCCGTGGAATGTGTCCAAAAAACTTTTCGGGA
AATCAAGAAATCTTACGCCGACAAGAACAAGCAACTGAAACGCGCCTATC
AACATGGAGAGGGTGGTTCAGACTCGCAACCTCGACACGTACGGGCTCCC
AACTGGGCTTGGGGCGGTCGGTACGCAAAAGAAACCTTTGTCGTGGAACC
CATTGTGCCATCTCCGTGTTTAGAAGGGTATAGGAACAAGTGCGAATTTA
CGGTTGGGCGTGACCAAGAGGGCCGCCCGACAGTGGGCTTCCGCATGGGC
GCATTTAGGAACGGCGTGATGCAGGTAGGTGGTCTAGAGGAAGGATGCGT
GCTTCTCGACGCCTTGACCCAACGCGTGGTGGCGGCGCTCCAAGCATTCA
TCCGGCGTCGGGGAGCTTTGCCTGTGTACGACCAAATTACTCACGAAGGC
GTCTGGCGCTACGTGACGGTGCGCACCAGCTCTCGGACAAAGCAGTGTTT
AGTATGCGTGTGTGCGGCCATAGAAAAGCAAGGGGCTGATTGGGCGCGCG
AGCAGGCAGCCCTTGTCGACTACCTCACGGCAACGACGCCTGTCGGAATG
GAGGGGGAGGCGTCGACTCCAGGGGAGGCGTCGACTCCAGGGGAGGCGTC
GACTCCAGGGGAGGCGTCGACTCCAGGGGAGGCGTCGACTCCAGGGGAGG
CGGTCGAAGGGGAAAGCCGGGAAGTCAATTCATTTTCCACAACATCGGGT
CCTTCCGTGTCCATGCTCCATGCACCATCGGAGAAAGAGACATCGAGTAA
CAAGGGCGACAGTGTTGTCGCGCCGCACGGGGCCTGGACCGGCGTCACTT
CCCTCTTTCTTGCGCCCTACGAGGGACTGAGCAATCCTTCCGCGGATGAG
CCGCTTATACATTTATGGGGCTCGCCGTATTTGGAAGAAGAGCTTTTAGG
ACTGCGTTTTCGCATCTCACCGCAAGCCTTCTTCCAGGTAAACACCGCCG
GCGCCGAGGTTCTGTATCAGAAAGTGATTGACGAGAGTCTGGGTCGCGGA
GGAAAGAAAGGAGATGGGGCAGCTGAGGCACCCAGGCTGATTTTGGATGT
GTGTTGTGGCACAGGAACGATAGGTATCTGTGCAGCCAAGCAGTTGGAAG
GAAGAGTACAAGCGGGTCGGGAGATTGCTGAAGATCCTCCAGGAACGAGC
ACTCAGCAGGACAACATCGCAGCCTTGAAAGGACAGCAGGCGGACGTGGC
GACGTCCCTTGTCCTCGGCATTGAAATATGTGAAAGCGCAGTAGAAGACG
CCGTGGAGAACGCGCGACAAAATCGAGTTGGTTGCGCGGCATTCCTGTGC
TCTCGAGCGGAGGATATCCTCCTAAGCGTCTTGCGGGAAAAGCCCGTGTC
CTCTGTTTCCGTGTCGCCTCCTCTACCCGCCAGCACCGGCAATAATGCCA
CCACTCCAGTCAGTGGCGGTCGTAGCGGCCACCATGTAGCGGAGGAAAAA
CTGGCTGGACTCAGCGCGGAAGTGCGTGCAGCACTGCAAGCGGTATTGGT
GGACCAAAACAGCGCCAGCGCCGGCAGCAAAACCCTGGTAGCCGCCATTG
TCGACCCTCCCCGGAGTGGGCTCCACGCTGATTGCCTGCGTGCCTTGCGG
AATTGCCGACACATCCAACGCTTGGTTTATGTATCTTGCAATCCCTCCAA
ATCCCTACCGCGGGACGCAGTTGCCTTGTGCGGTCCTCCTTCTCAGAGAT
TGAAGGGCGAAGCTTTCAGGCCTGTCAAAGCCATTCCCGTGGACATGTTC
CCGCATACCAGCCATTGCGAGGTGGTAATGGTTTTCGAAAGAGGGGATGT
AGAAATTGTGTCGGAAAACTCGGTGCAGGGTCCCGATCAAGGAGAAGTCC
AGGGGGAGCAACGAGAAAGTGTGACATCGCAAGTCAAGACGGAGACATAG
GACCCCAACAAACAACGATTCCGCGATTAT

protein sequence of rna4314

>rna4314-protein ID=rna4314-protein|Name=rna4314|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MQLVFVDEEQEMELGAMAASQVYKEEKNAILTASAPETLLVHDVAVELLR
SLQQCVKGQSGILAETTEQKERLEARIADRHWEVSVIDSDVVNAFVLPSG
NIFVYTGLLEHVQTRGGLAFILGHEVAHALARHSVEKIGVLCLGSFFLDF
TAGFLGASSHRYIQYTVLPYLQALVIDMPFSRTLETEADKLGMELMALAG
YDPQEAVEVWKRMEDGAQGGSGKNSQVGLPEFLSTHPSHQNRINRLQAQV
PAARALQQQALRLKKEKGERIPDGTQSILLPSRVRQKVISPKDALLQGRR
REASAQTAMRASNLVGAALERESRA

mRNA from alignment at CM002463.1:270044..271021+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4314 ID=rna4314|Name=rna4314|organism=Nannochloropsis gaditana|type=mRNA|length=978bp|location=Sequence derived from alignment at CM002463.1:270044..271021+ (Nannochloropsis gaditana)
ATGCAGCTCGTCTTCGTCGACGAAGAGCAAGAAATGGAATTGGGAGCCAT
GGCAGCATCGCAAGTAtacaaagaagaaaagaatgcTATTTTAACAGCGT
CGGCACCAGAGACGTTGCTTGTGCACGACGTGGCCGTCGAATTGCTAAGA
AGTCTGCAGCAGTGCGTGAAGGGGCAAAGCGGCATTTTGGCCGAAACGAC
GGAGCAAAAAGAGCGTCTCGAAGCTCGTATCGCAGACAGGCATTGGGAAG
TGAGCGTCATCGACTCCGACGTGGTAAATGCCTTCGTTCTGCCCTCCGGC
AACATCTTCGTCTACACCGGTCTCCTCGAACACGTGCAGACTCGCGGCGG
CTTGGCGTTCATCTTGGGCCACGAGGTCGCCCACGCCCTGGCCCGGCATT
CCGTGGAGAAGATAGGCGTCTTATGCCTCggctctttcttcctcgacTTC
ACGGCCGGCTTCCTGGGTGCCTCCTCGCACCGGTACATCCAGTACACGGT
GTTGCCCTACTTGCAGGCCTTGGTCATTGACATGCCCTTTTCTCGCACGC
TCGAgacggaggcggacaagCTGGGGATGGAGCTCATGGCCCTGGCCGGC
TACGACCCGCAAGAGGCGGTAGAGGTGTGGAAGCGCATGGAAGACGGGGC
CCAAGGCGGCAGCGGAAAGAATAGTCAAGTGGGTCTGCCAGAATTCTTGT
CGacgcatccctcccaccagaACCGGATCAATCGTCTACAGGCCCAGGTC
CCCGCGGCCCGCGCCTTGCAACAGCAAGCCTTGCGTctaaagaaggagaa
aggggaacgGATTCCGGATGGTACCCAGTCCATCTTGCTTCCGTCCCGTG
TCCGCCAAAAGGTCATCTCGCCGAAAGACGCGCTTTTGCAGGGGCGAAGA
CGGGAAGCGTCAGCACAGACAGCCATGAGAGCCTCCAATTTGGTGGGTGC
TGCGCTTGAAAGAGAGTCACGGGCGTAA

Coding sequence (CDS) from alignment at CM002463.1:270044..271021+

>rna4314 ID=rna4314|Name=rna4314|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002463.1:270044..271021+ (Nannochloropsis gaditana)
ATGCAGCTCGTCTTCGTCGACGAAGAGCAAGAAATGGAATTGGGAGCCAT
GGCAGCATCGCAAGTAtacaaagaagaaaagaatgcTATTTTAACAGCGT
CGGCACCAGAGACGTTGCTTGTGCACGACGTGGCCGTCGAATTGCTAAGA
AGTCTGCAGCAGTGCGTGAAGGGGCAAAGCGGCATTTTGGCCGAAACGAC
GGAGCAAAAAGAGCGTCTCGAAGCTCGTATCGCAGACAGGCATTGGGAAG
TGAGCGTCATCGACTCCGACGTGGTAAATGCCTTCGTTCTGCCCTCCGGC
AACATCTTCGTCTACACCGGTCTCCTCGAACACGTGCAGACTCGCGGCGG
CTTGGCGTTCATCTTGGGCCACGAGGTCGCCCACGCCCTGGCCCGGCATT
CCGTGGAGAAGATAGGCGTCTTATGCCTCggctctttcttcctcgacTTC
ACGGCCGGCTTCCTGGGTGCCTCCTCGCACCGGTACATCCAGTACACGGT
GTTGCCCTACTTGCAGGCCTTGGTCATTGACATGCCCTTTTCTCGCACGC
TCGAgacggaggcggacaagCTGGGGATGGAGCTCATGGCCCTGGCCGGC
TACGACCCGCAAGAGGCGGTAGAGGTGTGGAAGCGCATGGAAGACGGGGC
CCAAGGCGGCAGCGGAAAGAATAGTCAAGTGGGTCTGCCAGAATTCTTGT
CGacgcatccctcccaccagaACCGGATCAATCGTCTACAGGCCCAGGTC
CCCGCGGCCCGCGCCTTGCAACAGCAAGCCTTGCGTctaaagaaggagaa
aggggaacgGATTCCGGATGGTACCCAGTCCATCTTGCTTCCGTCCCGTG
TCCGCCAAAAGGTCATCTCGCCGAAAGACGCGCTTTTGCAGGGGCGAAGA
CGGGAAGCGTCAGCACAGACAGCCATGAGAGCCTCCAATTTGGTGGGTGC
TGCGCTTGAAAGAGAGTCACGGGCGTAA

Synonyms

Publications