rna4298, rna4298 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4298
Unique Name	rna4298
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1800
Alignment location	CM002463.1:213832..216633 +

Link to JBrowse

Properties


Property Name	Value
Product	cytochrome p450 family protein
Orig transcript id	gnl\|cribi\|Naga_100031g36.2246.mrna
Orig protein id	gnl\|cribi\|Naga_100031g36.2246
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:213832..216633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g36	gene4143	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4298	rna4298-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26363.1	cds4288	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:213832..216633+
coding sequence from alignment at CM002463.1:213832..216633+

mRNA sequence

>rna4298 ID=rna4298|Name=rna4298|organism=Nannochloropsis gaditana|type=mRNA|length=1800bp
ATGCGCTTTACGTTGTCGATGTCAGAAGTAGGAACGTGGTTGCTAATGGT
GCTTGTGGCCTCAGCTTCGATTGAACCTCATATGCGAATGACCTTGGAAG
CTACGGGAGAGCAAACGTTACCGACGTCCGAGGACATTGCAAGACAGCAG
CATGCCATGGCCGACCACCCTTTTGTGTCCATGGACGAAGCCAAGAGCAT
GTTTGGGCCCTCGGAGGGCCCAGGGGCAAATATTTCAAATTGGGGACAAA
ACTATTGTGGCAACAACATACACGTGCACCATCCGAAAACATACCAAGAA
GTAGCAGGGCTGGTTAAAGCCTTAAAAGCACAAGGAGCCAAAGTTCGCGT
CTTAGGAGTCATGCATTCTTGGAGTAACGTCTTTGCTGACGATGGGACGC
ATGTCATCTTTCTGGATAGTTTCAAGTCTATCACCCAGGACCCTAACGAC
TACACACGCGTCACTCTTCAGGCTGGAGTAACAAATGCAGAGCTAGCAGA
TTTCGCAGACAGCCCTAACAGGGGATATGGACGTTTCAGTTATTTAAAAA
TGAACACCCTTGTCCAGGCGGTCACATTTATTGGAGCGGCGCAGACAGCC
TCTCACGGCAGCGGAGACGGAGGGACATGTGGGGACTTTATCGAGAGCCT
GACGATGATTGATTCCTGGGGAAGTATCAGCATCTTTGACAGGAGTCATC
CAGATTTTCTCGTGTACACAGCCTGCTTGGGTATGTGCGGTATTATTCTT
GACGTGACTCTTAGATTCTCACCAGAGACTACGGGGGTCACTGTAACGCA
AATTAAGGCCCCATTGAAAGACTTTTTTCCCCGCGCCTGCGAGACAAACA
GCTCCTTCAATCCCCTCAAAGATTGGATAAATAGCCACGTTGGAGGTGCA
ATGAACTACGCCACATACAACAGTGCTATCTTATCTGGACCTTTAGACCC
CAAAAAGGCGGAAATCTACACGGCAAATGACTACTGCTGGGCGCAGGGCG
TGACGGAAACCCCCGGTCTGCAGGTGAAACCCGATCGTAAGGGTCTTCCT
ATATGGGGAACTCAGCATGAGCCTTACTATGACAAGGATTTATTCATCCC
CGCGGACTACCAAAACGCTGAAGGGACCAAACTACACCGAGTGGCACTTG
GGGACTGGCGCTTGAATCAGAACAGCAATTATATGCCATTCTTTGGCGGA
CTCGTACAAAATTCCGTGTTGGTCATGCAGCCTCCCTCCTTCCAACTCAA
GGCTGAGTACAATACCTCACGGGCGTCCTCGCAGCACTTCGTCCGATATA
TCGAGCACATAACGCATGCGAATGACTACTCTTTTGCCCTGAAGGTCGAC
GATGATTACACCAACATCTACGACGCCTGGTGGGCCCTCATTGATATCAA
CAACGAGATGTTTCGAGACACCGGCAGCTATCCTATGAATCTTTACGCTG
CTATTCGCTGGCTTGGACATTCCGACTGTCCCCTGTCTGGAGCTTACGGG
CAAGAAGGCGACCGTTTTGTGCTAATTGAAGCATCTTCTGCGCATGGGAC
TCCTGGATGGGAGGAGTTCTGTCGACGAGTCTTGGCAAAATTCGCAACAA
TCAAGACCAAGAAAGACGGTTCTCTTCCCAAGCCACATTGGGGAAAAGTC
AATAAGGACTGGACCCCGAACATAGCTGCATACACAAGGCAGGCTATGGG
TCCTCAATTGGAGAGAGTGAAGGAGGCAGTGTTTAAGACGGACCCAACAG
GCATGTTTCGTAACCAACATTTGTCCGAAGTTTTTGAACTGCCGTATTAA

protein sequence of rna4298

>rna4298-protein ID=rna4298-protein|Name=rna4298|organism=Nannochloropsis gaditana|type=polypeptide|length=687bp
MHTTQGKESLYTFSWFMSGSNSSPHGFVSFSCLSHSHTRLPGPVNAWPFG
FVWTVRAWRQQNIWWIKSKELFETHGSTIGFRVFSSYSILTQDPECVRAI
VTGSADLFPKGHLYKHLGLLPGGIFTTNGPRWRRDRRLLTPHFNFSAVST
FVPSFNAHVEEFLNALRQRCLTPRGTQDKSNDDRFESEASQEKAPGVVLD
MVQAFNRLTLDIIFDAGFGHDLHAVRQVPCRAAPLSDTALPCASAAAYKT
SLDEITGDPSEKVEPLLHESGDKESDEIAEALRIAFTEVAQRLTDPLPVL
KYLPRRYYRAKKATQVFRRVIDKAVMERRKRGEEQANEKEPGVGDRQGNL
LDLMIAVHEEGTWCTDEMLAQSMTFLIAGHETTSAMLTWTLMELGERPDL
WLKLRAEVDRVCGVSAPSSPWPSPSPRSSSRIDASHVDRMPFLRCVLKES
LRMHPPVTIISRRILKDLEVAGYLIPKGWHVGVSIYTLHRSPALWERPDE
FWPERWEEGPGARGKDTVRRCSVGDGMAHLDQKHFDNGTVPSLPHVPVSG
GKQGGVTLPSFDGNQAPPTQDQRISEIAEESREEAATNPATGTSRGPLKS
PFQYMPFSLGPRNCIGQRFAMTEASIILARLVRDWDVTLVDRAATVQRVE
LLTVRPDRLLCKLQPRQVYPLSPVRCGARESAAACSP

mRNA from alignment at CM002463.1:213832..216633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4298 ID=rna4298|Name=rna4298|organism=Nannochloropsis gaditana|type=mRNA|length=2802bp|location=Sequence derived from alignment at CM002463.1:213832..216633+ (Nannochloropsis gaditana)
CCTGCATTACTTGACACGTGATGCTCCTATCAATTTCATCAAATCCCCGC
CATATCAGGAACAGTTCCTTTTATGCTTTTTATTGATGCCGCGTCCGTAT
CTGGAGTGGGTTGGGCAGCCTTGGCCGTCACTGCGTGCGCGATCTGGATA
AGTTGGCGCTATAATTTGCACGGAAGCTTTCATCCTTACGTTTATGACAA
GCGGTAGGTGTATCAATGTGAAGCCCCTTTCTGGTGAAAGTGGGGGAAAA
TCCGAGTTATCCaagacctcccctcctgccttttaCTTTTTACTTTATTT
CTGTACTATTTTCACATTCCACGTCGTATTGTAAAATGAAGCCGATGGTA
ATGTAGAGACAATAACATCTGCACATATCCGTTCCCTAATTTAATGGCGC
TGACTTTGTGACAAGTAACCTACATATCAAGGGAGTCATACTATGCAGTC
CTCGCACATGAGACACACAAATGCACACTACACAGGGAAAGGAATCACTG
TATACGTTTTCTTGGTTCATGTCAGGCTCAAACTCCTCGCCTCACGGTTT
CGtatccttttcctgcctaTCGCATAGCCATACTCGTCTCCCAGGCCCCG
TCAATGCATGGCCGTTCGGGTTCGTGTGGACCGTGCGCGCCTGGCGGCAG
CAGAATATATGGTGGATCAAGTCCAAGGAACTTTTCGAGACGCATGGCTC
AACTATTGGTTTCCGTGTATTTTCGTCCTACTCCATTTTGACCCAAGATC
CTGAATGCGTGCGGGCTATCGTTACGGGCTCTGCCGATCTTTTCCCGAAA
GGTCATTTATACAAGCACCTGGGGCTACTGCCTGGAGGAATCTTTACAAC
AAACGGTCCTCGGTGGCGAAGGGATCGACGATTGCTGACGCCGCATTTTA
ATTTCTCGGCGGTTTCCACTTTCGTGCCCAGTTTCAACGCCCACGTCGAA
GAGTTCTTGAACGCCTTGCGGCAACGCTGTCTCACACCCAGAGGTACACA
AGACAAGAGCAATGATGACCGATTTGAATCCGAAGCGAGCCAAGAGAAGG
CGCCAGGAGTAGTACTGGATATGGTCCAAGCCTTCAACCGCTTGACCCTG
GACATTATTTTTGACGCCGGCTTCGGCCATGACTTGCACGCCGTCCGCCA
AGTCCCTTGTCGCGCTGCTCCCTTGTCGGACACAGCTTTGCCATGTGCGT
CTGCTGCCGCGTACAAGACTTCCCTCGATGAAATTACCGGCGACCCATCC
GAAAAAGTGGAGCCCCTCCTGCATGAAtcaggggacaaggagagcgaCGA
AATCGCCGAAGCCCTACGAATTGCTTTCACTGAGGTCGCGCAACGCTTGA
CAGATCCTTTGCCCGTCCTTAAGTATTTGCCTCGGCGCTATTATCGAGCG
AAGAAAGCTACGCAAGTCTTCAGACGGGTGATCGATAAGGCGgtgatgga
aaggaggaaacgaggggaggaacaAGCGAATGAGAAGGAGCCAGGGGTCG
GGGATCGGCAAGGGAATCTTTTGGATTTGATGATTGCCGTGCACGAGGAA
GGCACCTGGTGCACGGATGAAATGCTCGCGCAGAGTATGACGTTCCTGAT
CGCTGGCCATGAAACGACCAGTGCGATGTTAACCTGGACGTTGATGGAAC
TGGGGGAGCGACCTGACCTGTGGCTGAAGCTGCGGGCCGAAGTGGATCGC
GTCTGTGGGGTCTCTGCCCCCTCATCGCcctggccttctccttcccctcg
gtcTTCCTCCCGTATTGACGCGTCGCACGTGGACCgcatgcccttcctcc
gctgcgTGCTCAAGGAATCCTTGCGCATGCACCCTCCTGTGACAATCATC
TCCCGGCGGATCCTGAAAGATTTGGAGGTGGCCGGGTACTTGATCCCTAA
GGGCTGGCACGTAGGTGTGTCCATTTACACACTCCACCGCTCTCCTGCCT
TGTGGGAACGTCCGGATGAATTCTGGCCGGAgcggtgggaagaagggcct
gGAGCCAGGGGAAAGGACACAGTGCGAAGGTGTTCTGTGGGAGATGGCAT
GGCTCACTTGGACCAAAAACATTTCGATAACGGTACCGTGCCCTCCCTAC
CTCACGTGCCTGTGTCTGGCGGAAAACAGGGTGGTGTGACGCTTCCCTCG
TTCGACGGAAACCAAGCTCCGCCGACCCAGGATCAACGGATTTCGGAGAT
TGCTGAGGAAAGTCGCGAAGAGGCTGCGACGAATCCAGCAACGGGAACCA
GCCGTGGGCCCCTCAAGTCTCCATTCCAATACATGCCCTTTTCCCTAGGC
CCGCGGAACTGCATCGGCCAGCGCTTTGCCATGACGGAGGCAAGCATCAT
CCTGGCCCGTCTAGTGCGAGACTGGGATGTGACtcttgtggaccgggcgG
CGACCGTGCAACGTGTGGAGCTCTTGACCGTCCGGCCGGATCGACTCCTC
TGCAAATTGCAACCTCGTCAGGTGTATCCACTGTCTCCGGTACGGTGTGG
CGCACGGGAGTCGGCTGCCGCCTGCTCTCCGTGAGCTGGGAACAGAAGGC
GCGGTGAGGAACGAAAGGATTTTTTTAAATGATACGTATAAGAAGAGAGG
TGTGAATGATATTGGAGAGAAATTTGGATATTTTGTAGACATGTATACAT
GTAAAGAATTTATATCGAGCGAGGGAACAACCCCAAAAGGCGCATTCCAG
GAACGCAAAAATCAGCCTTATGGGAATGATATTGTGCTTGCGCACTGAAG
CTTTGATACTTTCAACGGGGTGATGCCACCCTTTTTTTCGTATACATTTA
GA

Coding sequence (CDS) from alignment at CM002463.1:213832..216633+

>rna4298 ID=rna4298|Name=rna4298|organism=Nannochloropsis gaditana|type=CDS|length=2064bp|location=Sequence derived from alignment at CM002463.1:213832..216633+ (Nannochloropsis gaditana)
ATGCACACTACACAGGGAAAGGAATCACTGTATACGTTTTCTTGGTTCAT
GTCAGGCTCAAACTCCTCGCCTCACGGTTTCGtatccttttcctgcctaT
CGCATAGCCATACTCGTCTCCCAGGCCCCGTCAATGCATGGCCGTTCGGG
TTCGTGTGGACCGTGCGCGCCTGGCGGCAGCAGAATATATGGTGGATCAA
GTCCAAGGAACTTTTCGAGACGCATGGCTCAACTATTGGTTTCCGTGTAT
TTTCGTCCTACTCCATTTTGACCCAAGATCCTGAATGCGTGCGGGCTATC
GTTACGGGCTCTGCCGATCTTTTCCCGAAAGGTCATTTATACAAGCACCT
GGGGCTACTGCCTGGAGGAATCTTTACAACAAACGGTCCTCGGTGGCGAA
GGGATCGACGATTGCTGACGCCGCATTTTAATTTCTCGGCGGTTTCCACT
TTCGTGCCCAGTTTCAACGCCCACGTCGAAGAGTTCTTGAACGCCTTGCG
GCAACGCTGTCTCACACCCAGAGGTACACAAGACAAGAGCAATGATGACC
GATTTGAATCCGAAGCGAGCCAAGAGAAGGCGCCAGGAGTAGTACTGGAT
ATGGTCCAAGCCTTCAACCGCTTGACCCTGGACATTATTTTTGACGCCGG
CTTCGGCCATGACTTGCACGCCGTCCGCCAAGTCCCTTGTCGCGCTGCTC
CCTTGTCGGACACAGCTTTGCCATGTGCGTCTGCTGCCGCGTACAAGACT
TCCCTCGATGAAATTACCGGCGACCCATCCGAAAAAGTGGAGCCCCTCCT
GCATGAAtcaggggacaaggagagcgaCGAAATCGCCGAAGCCCTACGAA
TTGCTTTCACTGAGGTCGCGCAACGCTTGACAGATCCTTTGCCCGTCCTT
AAGTATTTGCCTCGGCGCTATTATCGAGCGAAGAAAGCTACGCAAGTCTT
CAGACGGGTGATCGATAAGGCGgtgatggaaaggaggaaacgaggggagg
aacaAGCGAATGAGAAGGAGCCAGGGGTCGGGGATCGGCAAGGGAATCTT
TTGGATTTGATGATTGCCGTGCACGAGGAAGGCACCTGGTGCACGGATGA
AATGCTCGCGCAGAGTATGACGTTCCTGATCGCTGGCCATGAAACGACCA
GTGCGATGTTAACCTGGACGTTGATGGAACTGGGGGAGCGACCTGACCTG
TGGCTGAAGCTGCGGGCCGAAGTGGATCGCGTCTGTGGGGTCTCTGCCCC
CTCATCGCcctggccttctccttcccctcggtcTTCCTCCCGTATTGACG
CGTCGCACGTGGACCgcatgcccttcctccgctgcgTGCTCAAGGAATCC
TTGCGCATGCACCCTCCTGTGACAATCATCTCCCGGCGGATCCTGAAAGA
TTTGGAGGTGGCCGGGTACTTGATCCCTAAGGGCTGGCACGTAGGTGTGT
CCATTTACACACTCCACCGCTCTCCTGCCTTGTGGGAACGTCCGGATGAA
TTCTGGCCGGAgcggtgggaagaagggcctgGAGCCAGGGGAAAGGACAC
AGTGCGAAGGTGTTCTGTGGGAGATGGCATGGCTCACTTGGACCAAAAAC
ATTTCGATAACGGTACCGTGCCCTCCCTACCTCACGTGCCTGTGTCTGGC
GGAAAACAGGGTGGTGTGACGCTTCCCTCGTTCGACGGAAACCAAGCTCC
GCCGACCCAGGATCAACGGATTTCGGAGATTGCTGAGGAAAGTCGCGAAG
AGGCTGCGACGAATCCAGCAACGGGAACCAGCCGTGGGCCCCTCAAGTCT
CCATTCCAATACATGCCCTTTTCCCTAGGCCCGCGGAACTGCATCGGCCA
GCGCTTTGCCATGACGGAGGCAAGCATCATCCTGGCCCGTCTAGTGCGAG
ACTGGGATGTGACtcttgtggaccgggcgGCGACCGTGCAACGTGTGGAG
CTCTTGACCGTCCGGCCGGATCGACTCCTCTGCAAATTGCAACCTCGTCA
GGTGTATCCACTGTCTCCGGTACGGTGTGGCGCACGGGAGTCGGCTGCCG
CCTGCTCTCCGTGA

Synonyms

Publications