|
|
Properties
| Property Name | Value |
|---|
| Product | protein of unknown function DUF4392 |
| Orig transcript id | gnl|cribi|Naga_100003g53.1794.mrna |
| Orig protein id | gnl|cribi|Naga_100003g53.1794 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1065795..1067187 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna429 ID=rna429|Name=rna429|organism=Nannochloropsis gaditana|type=mRNA|length=1198bp
CCCGGGGTCTGGTGCCAACAATCACTCTTCAGGCGATTAAATGTCTGGAA
ATGCGCACAAAAACAGAGAATCATGACCGACATAGAATATTGGGACGGCG
AGCTTTCAAGCAAGCTAGCTGAGTTGGAGCAGACAATTGGCAATCTAAAG
TCCATGCGCGGAGGAGATAAAGAGGCGGGTATTGCAAAAAGTGAGGCCAC
CCTCAAACGAGTACGGGAGGTCAAGAAGGGATACAACTACGAAATGCGCA
TGTCGCTGAAGAATGATCCTCGACGCCACGAGTATGCGGAGAAATTGAAG
GCCGTGGACGAGAGGATCGCAGCACTGGAAACGGAACTCAAATGGGCCAA
AACTGAAGCCAACAAGAAGAGCCTTTTCAAGGGGAGTAAGGGGGCAGACG
GGAGTGGTACTTTGAACGAAAATGCAACCAACGATACCTACTTGACGGAA
GCGAAGAAAATCCAGGACAAGACCGAAGCCTCCCTCCAGTCGGCGCTCGG
GATGGTGGAGGCCTCGAAGCAGGTGGGTGCAAACACCGTGGACGAGGTGA
ACAGGCAGAAGGAGCAGATCGCGGAGATCACGGACACGGTGGAGGCCATG
GAGGACGGACTGACCAGGGCGGACAAACTCATACGGGCCTTTGGCCGGCG
CATTGCCACCGACAAGTTCATTCAGTTTTTCTTCGTCCTCAACTTCGGTT
TATTAGTGGGTATCATCGTCTGGTACGCTGTCAAGAAAGGAAAGGTCAGG
GCTCCTGAAATTCATGCCCCTCCCATGCCTACGTTCGACGAGGTCTTTGG
CTCCGGGGGGGGGGATAACACCTCAACGTTGACTGAACAGCCAACATCCG
ATGGTTTGGCGCGAAGACTGCGAGTAGCGGCCCGGTATTTGCGGCCCGTT
GCTAAGTCGATGACTCACATTCCGTAGCCGTCAAAGGCAAAGGAGGAAAA
GAAGAAGGCTTACACCAGTGGCACCGAAATGTTAATAGCTTGATGTTTGC
ATAGATTGTCAAAGTAAATGAAGGTCTAGAGCTTGAAGGTTGCATCTGAA
AAAATCAACAACAGATGGCAAAATCGATCGCATGCTGACCGTCAGGCCTT
CAGAATTACCATCGCACTGCATAGTCCGAGCAGGATGTCCTACACCTCCG
ATCTTTCTCCCATCAATTCCACGTGCTCTCTCGCCGTTTCTCGAAGGC back to topprotein sequence of rna429 >rna429-protein ID=rna429-protein|Name=rna429|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MVSSASRIIYRLETIVQHDEGGRGLKDLIQPAGELEMAARALQRASSPIA
ILTGFPCLLEHTPPTETDGPPGALAIIRACIGLGKTCILLTDQCNAAVIQ
AAVAADSPYISASLQIETFPAKSEWTDVEICRLRRLGCEVGFVVAIERAG
PARDGHYYTMRGRCMDTFVAPLEQLMSLTRPAIESLGIGDGGNELGMGKA
WERIVGSASIPHASRIACVTATTWLLAASVSNWGGYALSCALAVVAAEIE
EKETGPRTWSFTSEGDGVGPWKAGTDPDQWQARRNEWVDRLVPSEAQASS
TLGGMVAAGARDGITGERTTRVDGMPGAVSLQMLRRLRETAREHVELMGE
RSEV back to topmRNA from alignment at CM002455.1:1065795..1067187- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna429 ID=rna429|Name=rna429|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp|location=Sequence derived from alignment at CM002455.1:1065795..1067187- (Nannochloropsis gaditana)
TGTCACGGCCCATGCCCGCAACGTCACGGCTCAAATTACCAGGTTTCCGA
CAATATCCACGGCGCAGACCTCTGGACTAGTTTCGGTGCATTTGATGTAG
CATATGAACTCTGCCCCTGTATCGCTTCGGAGCGCACAGCTGGATGTGCT
TGCATTTTTCAAGCGTGTTCGTATCTTGATAGTTGGTAGGTCGCAGACCA
TTTCGAAGATGTATTACCTCCCCTCCATCGTATCTCGTATCATTCGCAGT
GTACAATCCACAGAACCATGGTTTCATCGGCCTCTCGAATTATTTATCGA
CTGGAGACTATTGTACAGCACGATGAGGGTGGACGCGGCTTGAAAGATCT
GATTCAGCCGGCGGGAGAGCTTGAAATGGCGGCCAGAGCACTTCAGCGGG
CCAGCTCCCCTATCGCCATTCTCACTGGCTTTCCCTGTCTACTAGAGCAT
ACTCCGCCAACCGAGACCGACGGCCCGCCAGGCGCCCTTGCAATTATCCG
AGCGTGCATTGGTCTTGGGAAGACGTGCATACTCTTGACCGATCAATGCA
ATGCTGCCGTCATCCAGGCAGCCGTTGCTGCAGATTCCCCATACATCTCT
GCCTCGCTCCAAATAGAGACATTTCCAGCTAAATCAGAATGGACAGATGT
GGAAATATGTCGCCTACGACGCCTGGGTTGTGAGGTGGGATTCGTAGTGG
CGATAGAGAGGGCGGGCCCTGCACGCGATGGCCACTACTACACAATGCGA
GGACGATGCATGGACACCTTTGTTGCTCCTTTGGAACAATTGATGAGCCT
GACGCGACCTGCGATCGAGAGTTTAGGCATCGGGGACGGTGGCAACGAGC
TGGGCATGGGCAAGGCCTGGGAGCGGATCGTGGGCTCTGCGAGCATCCCC
CACGCCAGTCGAATCGCCTGCGTCACGGCGACGACCTGGCTGTTAGCGGC
TTCTGTCAGCAACTGGGGCGGATATGCATTAAGCTGTGCCTTGGCGGTGG
TAGCCGCAGAAATTGAAGAGAAAGAAACTGGTCCACGTACATGGAGCTTC
ACCTCAGAGGGCGATGGGGTAGGGCCGTGGAAGGCGGGTACCGACCCGGA
TCAGTGGCAGGCAAGAAGGAACGAATGGGTGGATAGGTTGGTCCCAAGCG
AGGCTCAGGCGTCGAGCACTCTGGGTGGAATGGTGGCTGCTGGCGCCAGG
GATGGTATCACAGGAGAGCGGACGACTAGGGTGGATGGGATGCCAGGGGC
GGTGTCCTTACAAATGCTTCGTCGCCTTCGAGAAACGGCGAGAGAGCACG
TGGAATTGATGGGAGAAAGATCGGAGGTGTAGGACATCCTGCTCGGACTA
TGCAGTGCGATGGTAATTCTGAAGGCCTGACGGTCAGCATGCG back to topCoding sequence (CDS) from alignment at CM002455.1:1065795..1067187- >rna429 ID=rna429|Name=rna429|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002455.1:1065795..1067187- (Nannochloropsis gaditana)
ATGGTTTCATCGGCCTCTCGAATTATTTATCGACTGGAGACTATTGTACA
GCACGATGAGGGTGGACGCGGCTTGAAAGATCTGATTCAGCCGGCGGGAG
AGCTTGAAATGGCGGCCAGAGCACTTCAGCGGGCCAGCTCCCCTATCGCC
ATTCTCACTGGCTTTCCCTGTCTACTAGAGCATACTCCGCCAACCGAGAC
CGACGGCCCGCCAGGCGCCCTTGCAATTATCCGAGCGTGCATTGGTCTTG
GGAAGACGTGCATACTCTTGACCGATCAATGCAATGCTGCCGTCATCCAG
GCAGCCGTTGCTGCAGATTCCCCATACATCTCTGCCTCGCTCCAAATAGA
GACATTTCCAGCTAAATCAGAATGGACAGATGTGGAAATATGTCGCCTAC
GACGCCTGGGTTGTGAGGTGGGATTCGTAGTGGCGATAGAGAGGGCGGGC
CCTGCACGCGATGGCCACTACTACACAATGCGAGGACGATGCATGGACAC
CTTTGTTGCTCCTTTGGAACAATTGATGAGCCTGACGCGACCTGCGATCG
AGAGTTTAGGCATCGGGGACGGTGGCAACGAGCTGGGCATGGGCAAGGCC
TGGGAGCGGATCGTGGGCTCTGCGAGCATCCCCCACGCCAGTCGAATCGC
CTGCGTCACGGCGACGACCTGGCTGTTAGCGGCTTCTGTCAGCAACTGGG
GCGGATATGCATTAAGCTGTGCCTTGGCGGTGGTAGCCGCAGAAATTGAA
GAGAAAGAAACTGGTCCACGTACATGGAGCTTCACCTCAGAGGGCGATGG
GGTAGGGCCGTGGAAGGCGGGTACCGACCCGGATCAGTGGCAGGCAAGAA
GGAACGAATGGGTGGATAGGTTGGTCCCAAGCGAGGCTCAGGCGTCGAGC
ACTCTGGGTGGAATGGTGGCTGCTGGCGCCAGGGATGGTATCACAGGAGA
GCGGACGACTAGGGTGGATGGGATGCCAGGGGCGGTGTCCTTACAAATGC
TTCGTCGCCTTCGAGAAACGGCGAGAGAGCACGTGGAATTGATGGGAGAA
AGATCGGAGGTGTAG back to top
|