rna4273, rna4273 (mRNA) Nannochloropsis gaditana

Overview
Namerna4273
Unique Namerna4273
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length264
Alignment locationCM002463.1:144299..144823 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100879g2.8825.mrna
Orig protein idgnl|cribi|Naga_100879g2.8825
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:144299..144823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100879g2gene4116Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4273rna4273-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26411.1cds4263Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4273 ID=rna4273|Name=rna4273|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGAGCACCTTAGAAGACTGGTTACCTTCGCCTACTGGGCGAAGTTTTGT
CTTCCGATTATTTCTGGACTTGCCAGTGGTAAGGAGCTTGCTCCTCCCGG
CTAGGTGTCCTTGGGCTTACACTACCCTCAAGCGATGCCGAAACCCCCCC
CACCTCCCCAACCCATACCCTTACATCCCACCCACACCGGAGACACTATT
TCCTCTTTTTCGTGACGTCTCATTCATGGAGGTGATGCGTGCGAATTCCT
GCGGAGGATCATAA
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protein sequence of rna4273

>rna4273-protein ID=rna4273-protein|Name=rna4273|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MAMYFTIIKIQHSFIATIYHGVKRKIPLSPTTWSATASRMLRSATLSRRS
ISSPLTFSFIITRDLRVWNHMARNIVEKMCSCRGKGLMHFIPGKNFPHNI
YKILSSPKRTKINLLMALLTDLCAGYPIHFSGSPTNKFLDDWQDIVFFK
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mRNA from alignment at CM002463.1:144299..144823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4273 ID=rna4273|Name=rna4273|organism=Nannochloropsis gaditana|type=mRNA|length=525bp|location=Sequence derived from alignment at CM002463.1:144299..144823+ (Nannochloropsis gaditana)
ATGGCCATGTACTTCACCATCATTAAAATCCAGCACAGCTTTATAGCTAC
CATATATCATGGAGTGAAGCGAAAAATTCCATTGTCTCCTACGACCTGGA
GCGCGACAGCGTCACGCATGCTTCGGAGTGCTACTCTATCTCGACGTTCT
ATCAGCTCGCCTTTGACTTTCAGCTTTATCATAACAAGAGACTTGAGGGT
GTGGAATCATATGGCCAGAAATATTGTTGAAAAGATGTGTTCGTGATGTT
TTGGCTGTGAAGTTGTGCGAACTTTCCTGCCTTGTTTGATCGTTTTGTTG
ACTTGGGGCGTCCACAGTtgcagggggaaaggcctTATGCACTTCATCCC
CGGTAAGAATTTCCCGCATAACATTTACAAGATCTTATCTTCACCTAAGC
GGACTAAGATCAACCTGTTAATGGCTTTGCTTACGGACTTGTGTGCTGGA
TATCCAATTCATTTTTCAGGATCACCGACGAACAAATTTCTCGACGACTG
GCAAGATATTGTCTTTTTTAAATAA
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Coding sequence (CDS) from alignment at CM002463.1:144299..144823+

>rna4273 ID=rna4273|Name=rna4273|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at CM002463.1:144299..144823+ (Nannochloropsis gaditana)
ATGGCCATGTACTTCACCATCATTAAAATCCAGCACAGCTTTATAGCTAC
CATATATCATGGAGTGAAGCGAAAAATTCCATTGTCTCCTACGACCTGGA
GCGCGACAGCGTCACGCATGCTTCGGAGTGCTACTCTATCTCGACGTTCT
ATCAGCTCGCCTTTGACTTTCAGCTTTATCATAACAAGAGACTTGAGGGT
GTGGAATCATATGGCCAGAAATATTGTTGAAAAGATGTGTTCTtgcaggg
ggaaaggcctTATGCACTTCATCCCCGGTAAGAATTTCCCGCATAACATT
TACAAGATCTTATCTTCACCTAAGCGGACTAAGATCAACCTGTTAATGGC
TTTGCTTACGGACTTGTGTGCTGGATATCCAATTCATTTTTCAGGATCAC
CGACGAACAAATTTCTCGACGACTGGCAAGATATTGTCTTTTTTAAATAA
ATGGCCATGTACTTCACCATCATTAAAATCCAGCACAGCTTTATAGCTAC
CATATATCATGGAGTGAAGCGAAAAATTCCATTGTCTCCTACGACCTGGA
GCGCGACAGCGTCACGCATGCTTCGGAGTGCTACTCTATCTCGACGTTCT
ATCAGCTCGCCTTTGACTTTCAGCTTTATCATAACAAGAGACTTGAGGGT
GTGGAATCATATGGCCAGAAATATTGTTGAAAAGATGTGTTCTtgcaggg
ggaaaggcctTATGCACTTCATCCCCGGTAAGAATTTCCCGCATAACATT
TACAAGATCTTATCTTCACCTAAGCGGACTAAGATCAACCTGTTAATGGC
TTTGCTTACGGACTTGTGTGCTGGATATCCAATTCATTTTTCAGGATCAC
CGACGAACAAATTTCTCGACGACTGGCAAGATATTGTCTTTTTTAAATAA
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Synonyms
Publications