rna4272, rna4272 (mRNA) Nannochloropsis gaditana

Overview
Namerna4272
Unique Namerna4272
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2016
Alignment locationCM002463.1:143897..144246 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100879g1.8822.mrna
Orig protein idgnl|cribi|Naga_100879g1.8822
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:143897..144246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100879g1gene4115Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4272rna4272-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26408.1cds4262Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4272 ID=rna4272|Name=rna4272|organism=Nannochloropsis gaditana|type=mRNA|length=2016bp
GGAAATAAGACGTCTCTTTATAGGTGTCTTGATGATGATATTCACGCGAA
AGGACTGCTAATCCTGGAAGGAAAACCTTCAAAAAGAACCGCATGGCCTA
GTTGATAATCCTCGGCAGGGTGTTTTCGCTCCCCCGTGGAAATATGTCTT
AGCTTGGGAACAAAGACTCATGTTATAAACCGTGGACTCGTCATCAGCAA
AATTCATCCATGTCCTAGTCGTACAGTGGGGCGACTAAAAGTGCATCGCC
AAGGTAGTTGACCGGGACACTGGCATCCATCACTGAATAGAACGTATTGA
CAGAATCCTGAATCCAAGATTACCGCAATGACTACCCATTCCCAAGTCTG
ATGCTGTTGCATTTGTTTCAGTCTGTCAGTGTTTACTTTACGCGTGAAGC
TGAGAGGTATCAAGGGAGGAGGTTATCCTTGTGAGATGGCAAAGCCCCCT
TGTCGCACCAACGTTGCATCTTCACACTACACATTTTCCTTTGCCACCAT
ATCTCCGAACGATATAGATAAATTTTCCATGCTGCCACCTCTGCGGCCAT
TTTTGCGGTGCTCAAGACGGAGGCTTTTCAGTTTCTCCCGCGTTTCACCA
CCTGTAACCTCCTCCCCTCACCCCCCGGTCTGCTGCCTGACTTCTCCTTT
TCTCCTCCTCCTACTTCCCATGCTCGTTTATGGACGTAACTTGGCTAATA
CACAACATTCAAGAGCGTCATTCACTCCTTCCTGTGGCTTTGCAATATTC
TCTTTTCCTCCTACCCGTCGACATGTACTGATACCATCGCAAACATGCTT
GTTTTGGCGGTGTCGATTTCCTGTATCGCCTCCGATAGGCAAATATTACA
GCAGTCGAGATAAAAACAGTGATTTTGAGCTTGTATCGTCCGAAGTTCAG
CGCTCTCCCCGTCTTTACGTCCCAGAAGCTCTTTTGGGTAAGCATGTCCC
TGTTCCGATTTCTACAGACCAGCGCCATTACCTTCTCAAGGTAATGCGCC
TCCGCCCAGGAGCGTATGTGCGTGTGTTCAACAGGAGAGACGGCGAATGG
ATTGCGGTGGTCGCCGACGAAGCACCAGACATGGAACCGAAAAGAGAGAT
AGGCAGGTCAGATAAAAAGAGGACGAGGCGGGGAAGTGATGTTTCTCTTA
TAGCAAAGGCTCGGATCCGAGAGGGAGGGGGGGAGCAAAGGAACGACGAG
GGGGAGAGCAAACTGCGCTTATGTTTTGCACCTTTGAAACGCGCACGGCT
CAAGATATTATTCGAGAAAGCGACCGAAATGGGGGTCACACACCTGCAAC
CTGTGCTGACCGAACACACTGACGTGGCGCCGAGGCACGCGGAGGAAATG
ATGAAGAAGATGGAGGGGGGGTTGGTCGAGGCCGCCGAGCAATGTGAGCG
AATAGGTGTCCCTGAGGTCCTCCCAGCGATGACGTTTGACGCCCTCTTGG
AAGAAGAAAGGGGCGGTGGGGGTAGGTTGTACATTTGTAGAGAGAGGGAA
GGAGCCCGACCGATCATGGAAGTGTTAGAAAGGGACTGGAAGGAGATAAA
TGAAGACCGCAAGAACGGTAAAAAGGAAGAGCACAGAGGTACACCCTCCA
TTGTGATAGGTCCTGAAGGTGGATTTTCGCCCAGGGAGCTAGCTGCGATG
AAGGGGCACCCGAGGCTGGTCTCGCTAGGACCTTCAGTGTTGCGTGCCGA
GACTGCGGGCCTGGTAGCGGTAGGTGTATATGTGACCTGGCAAGAGGCGA
GATCTTTGCGCCAGAAAAGGCAAAAGATATCGCCCGCGGAGTAAATGCAG
CAAGAATGGCAAAGTAGAAACGATAAGGAATTTGATGTGAGACATTGGAT
TCAAAGCATGCTTGCTTTGGTTCACGAAGGTATGAAGGTGTCATAGTTTT
CGCTGCTATTTGACAATGTGCCTTTACCTGTGCTTGCGCAACTCATCCCA
TACACAAATGAAGGTACACGAACTAATTATGGGGAAATGGCTTTTATGGT
ACCGCACTCGCAACTG
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protein sequence of rna4272

>rna4272-protein ID=rna4272-protein|Name=rna4272|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MSTLEDWLPSPTGRSFVFRLFLDLPVVRSLLLPARCPWAYTTLKRCRNPP
HLPNPYPYIPPTPETLFPLFRDVSFMEVMRANSCGGS
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mRNA from alignment at CM002463.1:143897..144246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4272 ID=rna4272|Name=rna4272|organism=Nannochloropsis gaditana|type=mRNA|length=350bp|location=Sequence derived from alignment at CM002463.1:143897..144246+ (Nannochloropsis gaditana)
ATGAGCACCTTAGTATACAAGGCTTTCCTTACCCCCCTTTCAACTACTCT
TCTTGGCCTTTTGGCTTAGATCAAGTGTAGTATCTGTTCTGTAACCAGGA
AGACTGGTTACCTTCGCCTACTGGGCGAAGTTTTGTCTTCCGATTATTTC
TGGACTTGCCAGTGGTAAGGAGCTTGCTCCTCCCGGCTAGGTGTCCTTGG
GCTTACACTACCCTCAAGCGATGCCGAaaccccccccacctccccaaCCC
ATACCCTTACATCCCACCCACACCGGAGACActatttcctctttttcgtG
ACGTCTCATTCATGGAGGTGATGCGTGCGAATTCCTGCGGAGGATCATAA
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Coding sequence (CDS) from alignment at CM002463.1:143897..144246+

>rna4272 ID=rna4272|Name=rna4272|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002463.1:143897..144246+ (Nannochloropsis gaditana)
ATGAGCACCTTAGAAGACTGGTTACCTTCGCCTACTGGGCGAAGTTTTGT
CTTCCGATTATTTCTGGACTTGCCAGTGGTAAGGAGCTTGCTCCTCCCGG
CTAGGTGTCCTTGGGCTTACACTACCCTCAAGCGATGCCGAaaccccccc
cacctccccaaCCCATACCCTTACATCCCACCCACACCGGAGACActatt
tcctctttttcgtGACGTCTCATTCATGGAGGTGATGCGTGCGAATTCCT
GCGGAGGATCATAAATGAGCACCTTAGAAGACTGGTTACCTTCGCCTACT
GGGCGAAGTTTTGTCTTCCGATTATTTCTGGACTTGCCAGTGGTAAGGAG
CTTGCTCCTCCCGGCTAGGTGTCCTTGGGCTTACACTACCCTCAAGCGAT
GCCGAaaccccccccacctccccaaCCCATACCCTTACATCCCACCCACA
CCGGAGACActatttcctctttttcgtGACGTCTCATTCATGGAGGTGAT
GCGTGCGAATTCCTGCGGAGGATCATAA
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Synonyms
Publications