rna4271, rna4271 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4271
Unique Name	rna4271
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1705
Alignment location	CM002463.1:140651..142792 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal rna small subunit methyltransferase e
Orig transcript id	gnl\|cribi\|Naga_101542g1.537.mrna
Orig protein id	gnl\|cribi\|Naga_101542g1.537
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:140651..142792 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101542g1	gene4114	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4271	rna4271-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26412.1	cds4261	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:140651..142792-
coding sequence from alignment at CM002463.1:140651..142792-

mRNA sequence

>rna4271 ID=rna4271|Name=rna4271|organism=Nannochloropsis gaditana|type=mRNA|length=1705bp
TGCGTCCATGTCTGCGTGCATACATTCATGCTACAGATATGGCTTGTTAA
TGGAGCATCAAAATCGAGGTGTTGTGACCACAGATTAACTCAGACTTTTC
GAGGCGCTCCACTTGTGTACACGACCGAGGAGATCTGTTTCCCTTATTTC
GTCTTACTGGGATAATCCTCGAATATATAGACGCACGAATATGCCTTATC
TATCAGATGTACCGATGACTACTCTGTTATGGGTTACTTTCCTCTCCACA
GCACACACCCTAGGCATAAGACGTCCGACTCACAACACAGATAATATGCG
CGTCCTTTTCGTATCTGCATGCCTCGTTGTACTTGGCATTGCCTATGCCC
CCACTGCAGTCGCGCAGGAATGTCCGACTCTCACCCTCACTGGCAAGGCG
CGTCCGGGCTTCAAACGCGGAGTCTTGGCAGGTAAAGGTCATGCTAGGGT
CACCGTCACTCTTCGAAGTAAAGAAGTCGTCGACGATCTCAACTTCAAAT
TGTTGCTACCGACGGGTTTGTCACTTGTGCGTACCTCCAGTCGTCCAAAG
GCGCGCATTCACCCCGAAGTTGTCGAGAACCCGGACGGATCAACGGCCGT
GTTTTGGCTCGGCTTCGACTTTGCGAAAGCCAAAGGTAACAAGCGTGTTT
TCAAAGCCAAAGCTAAAGTCGACGCATGTGCCCCAGAGACTCTGACAGTC
ACCGGCCTAGCTTACCTGGTGAATGCGACAGACCTGACAACCTACTGTGC
GACGCCGCTGGCAAGTCCCGCAGTCTTGAACGTGCGGTACTCGAAAGCCA
AGAAGGTGGCTACATGTGCGCCGACTCCTGCTCCGACCGTCAACCCCGCG
CAACCCTTTGTGTTGTTTGGCGATGGACAGCGATGTTTGGAAGCAAGCCG
ACTGGCACCATTCGACGATCGCCGCTTGTTGTCGAGCTCCAACGGACGCG
AATACGCGCACTCTATCCACCGTGAGCACCGGCATCTCCAATCGATAGCA
ACGCCAAGTGACTGCTTCACATACTGCTCTCTGAACGGAGGAGAGTCGGT
GCCTTTCTTTTTCAACTGGAACACGGTCACATCCCAGTGCTTCTGCTGCG
GGAACGTATGCACGTTGATTGTTGACCCAGCGTTCAGTGCGTATGAAGTG
ACCATGGACGCAACAAGCGCTCCAACGGCAGTTTCTACGGCTACTCCTAC
GCCTGCCCCTACGGCGTCGCCTACGCTTACCCCCACCGCGTCGCCCACGG
CAGTCCCCACGGCAACCCCGACTGCTGCTCCTACTGCATCGCCCACAGCT
GCTCCCACGAAATCGCCCACAGCTGCTCCCACAACATCGCCGACTGCTGC
TCCTACTGCATCGCCGACTGCTGCTCCTACTGCATCGCCCACAGCTGCTC
CCACGACATCGCCCACAGCTGCTCCTACTGCATCGCCGACCGCTGCTCCT
ACTGCATCGCCGACTACTGCTCCTACTGCATCGCCGACCGCTGCTCCTAC
TGCATCGCCGACTACTGCTCCTACTGCATCGCCGACTGCTGCTCCTACTG
CATCGCCGACTGCTGCTCCTACTGCATCGCCCACAGCTGCTCCTACTGCA
TCGCCGACAGCTGCTCCTACTGCATCGCCGACTGCTGCTCCCACTGCATC
GCCGACAGCTGCTCCCACGACATCGCCCACAGCTGCTCCCACGACATCGC
CGACC

protein sequence of rna4271

>rna4271-protein ID=rna4271-protein|Name=rna4271|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MAKPPCRTNVASSHYTFSFATISPNDIDKFSMLPPLRPFLRCSRRRLFSF
SRVSPPVTSSPHPPVCCLTSPFLLLLLPMLVYGRNLANTQHSRASFTPSC
GFAIFSFPPTRRHVLIPSQTCLFWRCRFPVSPPIGKYYSSRDKNSDFELV
SSEVQRSPRLYVPEALLGKHVPVPISTDQRHYLLKVMRLRPGAYVRVFNR
RDGEWIAVVADEAPDMEPKREIGRSDKKRTRRGSDVSLIAKARIREGGGE
QRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEHTDVAPR
HAEEMMKKMEGGLVEAAEQCERIGVPEVLPAMTFDALLEEERGGGGRLYI
CREREGARPIMEVLERDWKEINEDRKNGKKEEHRGTPSIVIGPEGGFSPR
ELAAMKGHPRLVSLGPSVLRAETAGLVAVGVYVTWQEARSLRQKRQKISP
AE

mRNA from alignment at CM002463.1:140651..142792-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4271 ID=rna4271|Name=rna4271|organism=Nannochloropsis gaditana|type=mRNA|length=2142bp|location=Sequence derived from alignment at CM002463.1:140651..142792- (Nannochloropsis gaditana)
GGAAATAAGACGTCTCTTTATAGGTGTCTTGATGATGATATTCACGCGAA
AGGACTGCTAATCCTGGAAGGAAAACCTTCAAAAAGAACCGCATGGCCTA
GTTGATAATCCTCGGCAGGGTGTTTTCGCTCCCCCGTGGAAATATGTCTT
AGCTTGGGAACAAAGACTCATGTTATAAACCGTGGACTCGTCATCAGCAA
AATTCATCCATGTCCTAGTCGTACAGTGGGGCGACTAAAAGTGCATCGCC
AAGGTAGTTGACCGGGACACTGGCATCCATCACTGAATAGAACGTATTGA
CAGAATCCTGAATCCAAGATTACCGCAATGACTACCCATTCCCAAGTCTG
ATGCTGTTGCATTTGTTTCAGTCTGTCAGTGTTTACTTTACGCGTGAAGC
TGAGAGGTATCAAGGGAGGAGGTTATCCTTGTGAGATGGCAAAGCCCCCT
TGTCGCACCAACGTTGCATCTTCACACTACACATTTTCCTTTGCCACCAT
ATCTCCGAACGATATAGATAAATTTTCCATGCTGCCACCTCTGCGGCCAT
TTTTGCGGTGCTCAAGACGGAGGCTTTTCAGTTTCTCCCGCGTTTCACCA
CCTGTAACCTCCTCCCCTCACCCCCCGGTCTGCTGCCTGACTTCTCCTTT
TCTCCTCCTCCTACTTCCCATGCTCGTTTATGGACGTAACTTGGCTAATA
CACAACATTCAAGAGCGTCATTCACTCCTTCCTGTGGCTTTGCAATATTC
TCTTTTCCTCCTACCCGTCGACATGTACTGATACCATCGCAAACATGCTT
GTTTTGGCGGTGTCGATTTCCTGTATCGCCTCCGATAGGCAAATATTACA
GCAGTCGAGATAAAAACAGTGATTTTGAGCTTGTATCGTCCGAAGTTCAG
GTAGCGTAGGACAGAAAATCATGGAGATGCGGACATGAAATGCTTCCTGT
CCAAGCCACCTTGTGTCCACCCTGCCACCTCGATTCAGACCTCAAGCCAT
CCCTTTTTCTCTTCCCACCTCTACAGCGCTCTCCCCGTCTTTACGTCCCA
GAAGCTCTTTTGGGTAAGCATGTCCCTGTTCCGATTTCTACAGACCAGCG
CCATTACCTTCTCAAGGTAATGCGCCTCCGCCCAGGAGCGTATGTGCGTG
TGTTCAACAGGAGAGACGGCGAATGGATTGCGGTGGTCGCCGACGAAGCA
CCAGACATGGAACCGAAAAGAGAGATAGGCAGGTCAGATAAAAAGAGGAC
GAGGCGGGGAAGTGATGTTTCTCTTATAGCAAAGGCTCGGATCCGAGAGG
GAGGGGGGGAGCAAAGGAACGACGAGGGGGAGAGCAAACTGCGCTTATGT
TTTGCACCTTTGAAACGCGCACGGCTCAAGATATTATTCGAGAAAGCGAC
CGAAATGGGGGTCACACACCTGCAACCTGTGCTGACCGAACACACTGACG
TGGCGCCGAGGCACGCGGAGGAAATGATGAAGAAGATGGAGGGGGGGTTG
GTCGAGGCCGCCGAGCAATGTGAGCGAATAGGTGTCCCTGAGGTCCTCCC
AGCGATGACGTTTGACGCCCTCTTGGAAGAAGAAAGGGGCGGTGGGGGTA
GGTTGTACATTTGTAGAGAGAGGGAAGGAGCCCGACCGATCATGGAAGTG
TTAGAAAGGGACTGGAAGGAGATAAATGAAGACCGCAAGAACGGTAAAAA
GGAAGAGCACAGAGGTACACCCTCCATTGTGATAGGTCCTGAAGGTGGAT
TTTCGCCCAGGGAGCTAGCTGCGATGAAGGGGCACCCGAGGCTGGTCTCG
CTAGGACCTTCAGTGTTGCGTGCCGAGACTGCGGGCCTGGTAGCGGTAGG
TGTATATGTGACCTGGCAAGAGGCGAGATCTTTGCGCCAGAAAAGGCAAA
AGATATCGCCCGCGGAGTAAATGCAGCAAGAATGGCAAAGTAGAAACGAT
AAGGAATTTGATGTGAGACATTGGATTCAAAGCATGCTTGCTTTGGTTCA
CGAAGGTATGAAGGTGTCATAGTTTTCGCTGCTATTTGACAATGTGCCTT
TACCTGTGCTTGCGCAACTCATCCCATACACAAATGAAGGTACACGAACT
AATTATGGGGAAATGGCTTTTATGGTACCGCACTCGCAACTG

Coding sequence (CDS) from alignment at CM002463.1:140651..142792-

>rna4271 ID=rna4271|Name=rna4271|organism=Nannochloropsis gaditana|type=CDS|length=2718bp|location=Sequence derived from alignment at CM002463.1:140651..142792- (Nannochloropsis gaditana)
CGCTCTCCCCGTCTTTACGTCCCAGAAGCTCTTTTGGGTAAGCATGTCCC
TGTTCCGATTTCTACAGACCAGCGCCATTACCTTCTCAAGGTAATGCGCC
TCCGCCCAGGAGCGTATGTGCGTGTGTTCAACAGGAGAGACGGCGAATGG
ATTGCGGTGGTCGCCGACGAAGCACCAGACATGGAACCGAAAAGAGAGAT
AGGCAGGTCAGATAAAAAGAGGACGAGGCGGGGAAGTGATGTTTCTCTTA
TAGCAAAGGCTCGGATCCGAGAGGGAGGGGGGGAGCAAAGGAACGACGAG
GGGGAGAGCAAACTGCGCTTATGTTTTGCACCTTTGAAACGCGCACGGCT
CAAGATATTATTCGAGAAAGCGACCGAAATGGGGGTCACACACCTGCAAC
CTGTGCTGACCGAACACACTGACGTGGCGCCGAGGCACGCGGAGGAAATG
ATGAAGAAGATGGAGGGGGGGTTGGTCGAGGCCGCCGAGCAATGTGAGCG
AATAGGTGTCCCTGAGGTCCTCCCAGCGATGACGTTTGACGCCCTCTTGG
AAGAAGAAAGGGGCGGTGGGGGTAGGTTGTACATTTGTAGAGAGAGGGAA
GGAGCCCGACCGATCATGGAAGTGTTAGAAAGGGACTGGAAGGAGATAAA
TGAAGACCGCAAGAACGGTAAAAAGGAAGAGCACAGAGGTACACCCTCCA
TTGTGATAGGTCCTGAAGGTGGATTTTCGCCCAGGGAGCTAGCTGCGATG
AAGGGGCACCCGAGGCTGGTCTCGCTAGGACCTTCAGTGTTGCGTGCCGA
GACTGCGGGCCTGGTAGCGGTAGGTGTATATGTGACCTGGCAAGAGGCGA
GATCTTTGCGCCAGAAAAGGCAAAAGATATCGCCCGCGGAGTAAATGGCA
AAGCCCCCTTGTCGCACCAACGTTGCATCTTCACACTACACATTTTCCTT
TGCCACCATATCTCCGAACGATATAGATAAATTTTCCATGCTGCCACCTC
TGCGGCCATTTTTGCGGTGCTCAAGACGGAGGCTTTTCAGTTTCTCCCGC
GTTTCACCACCTGTAACCTCCTCCCCTCACCCCCCGGTCTGCTGCCTGAC
TTCTCCTTTTCTCCTCCTCCTACTTCCCATGCTCGTTTATGGACGTAACT
TGGCTAATACACAACATTCAAGAGCGTCATTCACTCCTTCCTGTGGCTTT
GCAATATTCTCTTTTCCTCCTACCCGTCGACATGTACTGATACCATCGCA
AACATGCTTGTTTTGGCGGTGTCGATTTCCTGTATCGCCTCCGATAGGCA
AATATTACAGCAGTCGAGATAAAAACAGTGATTTTGAGCTTGTATCGTCC
GAAGTTCAGCGCTCTCCCCGTCTTTACGTCCCAGAAGCTCTTTTGGGTAA
GCATGTCCCTGTTCCGATTTCTACAGACCAGCGCCATTACCTTCTCAAGG
TAATGCGCCTCCGCCCAGGAGCGTATGTGCGTGTGTTCAACAGGAGAGAC
GGCGAATGGATTGCGGTGGTCGCCGACGAAGCACCAGACATGGAACCGAA
AAGAGAGATAGGCAGGTCAGATAAAAAGAGGACGAGGCGGGGAAGTGATG
TTTCTCTTATAGCAAAGGCTCGGATCCGAGAGGGAGGGGGGGAGCAAAGG
AACGACGAGGGGGAGAGCAAACTGCGCTTATGTTTTGCACCTTTGAAACG
CGCACGGCTCAAGATATTATTCGAGAAAGCGACCGAAATGGGGGTCACAC
ACCTGCAACCTGTGCTGACCGAACACACTGACGTGGCGCCGAGGCACGCG
GAGGAAATGATGAAGAAGATGGAGGGGGGGTTGGTCGAGGCCGCCGAGCA
ATGTGAGCGAATAGGTGTCCCTGAGGTCCTCCCAGCGATGACGTTTGACG
CCCTCTTGGAAGAAGAAAGGGGCGGTGGGGGTAGGTTGTACATTTGTAGA
GAGAGGGAAGGAGCCCGACCGATCATGGAAGTGTTAGAAAGGGACTGGAA
GGAGATAAATGAAGACCGCAAGAACGGTAAAAAGGAAGAGCACAGAGGTA
CACCCTCCATTGTGATAGGTCCTGAAGGTGGATTTTCGCCCAGGGAGCTA
GCTGCGATGAAGGGGCACCCGAGGCTGGTCTCGCTAGGACCTTCAGTGTT
GCGTGCCGAGACTGCGGGCCTGGTAGCGGTAGGTGTATATGTGACCTGGC
AAGAGGCGAGATCTTTGCGCCAGAAAAGGCAAAAGATATCGCCCGCGGAG
TAAATGGCAAAGCCCCCTTGTCGCACCAACGTTGCATCTTCACACTACAC
ATTTTCCTTTGCCACCATATCTCCGAACGATATAGATAAATTTTCCATGC
TGCCACCTCTGCGGCCATTTTTGCGGTGCTCAAGACGGAGGCTTTTCAGT
TTCTCCCGCGTTTCACCACCTGTAACCTCCTCCCCTCACCCCCCGGTCTG
CTGCCTGACTTCTCCTTTTCTCCTCCTCCTACTTCCCATGCTCGTTTATG
GACGTAACTTGGCTAATACACAACATTCAAGAGCGTCATTCACTCCTTCC
TGTGGCTTTGCAATATTCTCTTTTCCTCCTACCCGTCGACATGTACTGAT
ACCATCGCAAACATGCTTGTTTTGGCGGTGTCGATTTCCTGTATCGCCTC
CGATAGGCAAATATTACAGCAGTCGAGATAAAAACAGTGATTTTGAGCTT
GTATCGTCCGAAGTTCAG

Synonyms

Publications