rna4270, rna4270 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4270
Unique Name	rna4270
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3238
Alignment location	CM002463.1:138128..139832 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101468g1.7607.mrna
Orig protein id	gnl\|cribi\|Naga_101468g1.7607
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:138128..139832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101468g1	gene4113	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4270	rna4270-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26413.1	cds4260	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:138128..139832+
coding sequence from alignment at CM002463.1:138128..139832+

mRNA sequence

>rna4270 ID=rna4270|Name=rna4270|organism=Nannochloropsis gaditana|type=mRNA|length=3238bp
AAGTCCAATGCCGGAGGAAAACGTGATGCCGCAGACATGCCTACATGTTT
TTGGAAAAGATCAGCTTCCCGGTAAAATGAGGATATACTTCCTACACCCA
CCAGCATGGTGTTCCGAATTCAAGTGTAATGACATCTTCGAAGGTACTTT
GATGTCAATCGCAGTTGCGAGTGCGGTACCATAAAAGCCATTTCCCCATA
ATTAGTTCGTGTACCTTCATTTGTGTGTGGGATGAGTTGCACAAGCACAG
GTAAAGGCACATTGTCAAATAGCAGCGAAAACTATGACAGCTTCATACCT
TCGTGAACCAAAGCAAGCACGCTTTGAATCCAATGTCTCACATCAAACTC
CTTATCGTTTCTACTTTGCCATTCTTGCTGCATTTACTCCGCGGGCGATA
TCTTTTGCCTTTTCTGGCGCAAAGATCTCGCCTCGTGCCAGGTAACACTT
CTTTTCAAGTCCAGACAGTCTCTACGCTGGCCTCCCGTCCCCCCCCACCA
CCTGGTGGTTCAGCTGCTCGAATGAGCGCGCAAACTTCAGCTGGCGGAGT
GGTCCTATAATTTTTCGGACGGATTATCATCCGTCTCGCGAGGCGTCCCC
GCTCCTTTATCCTCTCCGAAAGCGATTTGAAAAGGTTCTCGTTGATGTTC
GGGATGGCCGCCAGACACTTCTTCGGCTGCCATTTCCTGGGGAGCTGCAT
CGTCTATACCACTCACTGACGCTGGGGTCGCTGATGCTGGCGCGAGCGGT
AGATTGTTGCTCAGATTCCTCTTCCTCTTCTAAGGCTTGGGCGGGCCTCT
GCTCCCCTCCGAGACACAAGTGGCGCTCTTCCGCCGGCTCCCGCCCCTCG
CCGCGGATTGAGGTGCCCCCGTCGTCACCACCCCGCCCCCCCCAGGAGGA
GCCTTCTTCCCGGCCAGCCCTTGGAGCTTCTCTAGCACACAGGGCTCCAT
GTGGCGTCGGATGTCCGGGTCGATGCAGCTGTTGTTATTTGGTCTTGAAA
TAACTACCTTCAGAGACTTTGGCTCTGTCTCCGCCAGTCTGGCGATCGCG
GGGTCCTGGTTGGGGGCGGCGGCGGTGGTCCGTACTACCGAAATCTTCAT
GGCGGAGGGGCTCGACGTCGGCCGGTAGTGTCGGCTCTTCTTCTTTCCCG
CCTGCCGTGGATGGCGTCACCCTCCGGTGCATTGGCCCGAAAGCTTGACT
TTTGGCCCCACGCCGGAGAGCTTGCACGCGAACTCCCGGCGGCCCTGGAT
GTGGTTAATGGAGGTGGCTACCATGGTGTGGTCCAACGCCCTCTGCAACG
CCACACTCAGGGAGGTATCTGCTGCCGCCACGCCCTTGCGAGGGAAGACG
TGACCCTCCTCGAGCGCCCAGTGAAGGCCCGGTATAGGAAATGAAACTCC
ATGTGAAATTTCCATTCCACGCGGGGGAGAGTCGAACTGGGTGGGGTGGG
AGGGAAGGACGTGAGAGGAAGCACGAGCGGCCGGTCCGTCTCCATAGCCA
CCAACACGCACATCCCTGTCCTTAGTGGGACTTTTCACGTGCCATGATTC
TATCGGCCGCAGTGGCACGCGCGTCTTGTCGTGCTTGATTGTCACGACGA
CGTCCTCCCGGCCCTTCCCCTCCGGCAGGACCAGCGCCTTGTCCACCATC
AGCTTCTCGACCGCCTCCGCCTCCAGGCCTTGAAGAGCGCTGTCCGCCAT
CTGCCGCCAGGGTTCCGCTATCTCCGAGAGCGGGACCATGGTTTAAAGTA
AGGCGTTGCGCCTGTCGCCGAGGTCCCCTCTCTTTACGAGGTACAGGCGC
CTCCCATCGCGGGGGAAGGGCGTGACCTGGTTGGGATTCTTGGCTTCGAG
GGGCGACACCCACGGCGCCTCTACCACCCTCCATAGCGCTTCCTGTAGAT
GGAAATTTTCCTTGAAGGGGGCTGTCTCGGGCACCTGATGAAGGGAAGTT
AGGAAGAAAGGGTCGAATCGTCAGGTAGCGAAGGGGCAAAGGGGAGAACA
CGCATGCAATATCGGTTCTGTCTCACGTACCAGTGGATGCAGGTATTGCA
CGATGTAAAGAAGCGTTGCAATTTTGTTCTTCTCTACGACGGTGAGGTAC
ACCCCGACGCCCAGCGCCTGGACTACCTCTGCCGCCCGCCGGATAAGGGC
CCGGTCCCGCTGGGAGGGATCAACAGGCTCCGCCCACTCGCTCCTGTCTA
TGACTGCATGGTACGATATAACAAGTGTGAGTCATTTTTGAACACGAAGC
CGGTGGGCTGGCGGGGACCCTCCCCGATACTTTTCAAATTACGCCATCGC
TCCCTCCCTTCCACTCTCCTCTCACCGTTACGGAGCCACATGTCTGCGCG
CGTCTCGAACACATCAACACGAACAGTGATTTTGTATCCTACTGCCTCGC
CGGGGGCAGGCACGTATTGACAAATATGCGTCGGCGGCATGGGCATCTCC
ACCGTTTCCTCCGTTCCCGCCTTGGTCTTGATGCGCAGCGTCGCATTTGT
GGCAGTGCTGCTGCTGCTGAATGCAGTCACGATGTCAGTATTACAACATG
GGATTGCACCTGTAGCGTAGAGGAGAGAGAATCACAAATCAGTGCCATCA
TCGGCCATGGTGGTGGCCATCCATAAATTTCAAACGAATACAGCCGTCGC
TCAAAATCGCGTCAAGATGGCGTGCGCGGGAAAGGCTTCACGCCTTCATG
CGCCTTAAAGATACAAGAACAGTGCGACAGTGAGAAATGCTAGTATCAAG
CAAAATACAATGTAAAACAAACTTCGACTGGGAGGCAAGACATGATGTAA
ATGCATTCAATAAGATGGCAATTTCGGCTGGTCAAACGTTCAAGACGGAG
GATGTCAACACAAGGCGACCCGGATGTGGGGTGACTAAAAGCACAGCAAA
AGTAGGTGACTCATTGTCCCCTCCTTGTAAATGTAGTACGAGACATACCT
GCGTCATGCCTGCAAACTATTTTTCTTTGGAAATGTGCCGACTGTGCTCC
TCAATGGTCATTCGTAAAAATGCCATAAGAGCCTTTGCTGCTCCTTTAGC
CACATCAATTGCCTCAAAGAGCTGGGAAGGCATCATTATGCCCATGCTTT
GACAGGACAACACGTTTTGATCTACACTACTTATGCCTATTGTAATGGTA
GCTATGCTTTGGCGCTCTTCCTCGTTAATGGGATCGAGCAATAGATATGT
GCTGCTGCTGGTAGGGGCCGTTGTAGAGGAGGAGGAAG

protein sequence of rna4270

>rna4270-protein ID=rna4270-protein|Name=rna4270|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp
MPYLSDVPMTTLLWVTFLSTAHTLGIRRPTHNTDNMRVLFVSACLVVLGI
AYAPTAVAQECPTLTLTGKARPGFKRGVLAGKGHARVTVTLRSKEVVDDL
NFKLLLPTGLSLVRTSSRPKARIHPEVVENPDGSTAVFWLGFDFAKAKGN
KRVFKAKAKVDACAPETLTVTGLAYLVNATDLTTYCATPLASPAVLNVRY
SKAKKVATCAPTPAPTVNPAQPFVLFGDGQRCLEASRLAPFDDRRLLSSS
NGREYAHSIHREHRHLQSIATPSDCFTYCSLNGGESVPFFFNWNTVTSQC
FCCGNVCTLIVDPAFSAYEVTMDATSAPTAVSTATPTPAPTASPTLTPTA
SPTAVPTATPTAAPTASPTAAPTKSPTAAPTTSPTAAPTASPTAAPTASP
TAAPTTSPTAAPTASPTAAPTASPTTAPTASPTAAPTASPTTAPTASPTA
APTASPTAAPTASPTAAPTASPTAAPTASPTAAPTASPTAAPTTSPTAAP
TTSPT

mRNA from alignment at CM002463.1:138128..139832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4270 ID=rna4270|Name=rna4270|organism=Nannochloropsis gaditana|type=mRNA|length=1705bp|location=Sequence derived from alignment at CM002463.1:138128..139832+ (Nannochloropsis gaditana)
TGCGTCCATGTCTGCGTGCATACATTCATGCTACAGATATGGCTTGTTAA
TGGAGCATCAAAATCGAGGTGTTGTGACCACAGATTAACTCAGACTTTTC
GAGGCGCTCCACTTGTGTACACGACCGAGGAGATCTGTTTCCCTTATTTC
GTCTTACTGGGATAATCCTCGAATATATAGACGCACGAATATGCCTTATC
TATCAGATGTACCGATGACTACTCTGTTATGGGTTACTTTCCTCTCCACA
GCACACACCCTAGGCATAAGACGTCCGACTCACAACACAGATAATATGCG
CGTCCTTTTCGTATCTGCATGCCTCGTTGTACTTGGCATTGCCTATGCCC
CCACTGCAGTCGCGCAGGAATGTCCGACTCTCACCCTCACTGGCAAGGCG
CGTCCGGGCTTCAAACGCGGAGTCTTGGCAGGTAAAGGTCATGCTAGGGT
CACCGTCACTCTTCGAAGTAAAGAAGTCGTCGACGATCTCAACTTCAAAT
TGTTGCTACCGACGGGTTTGTCACTTGTGCGTACCTCCAGTCGTCCAAAG
GCGCGCATTCACCCCGAAGTTGTCGAGAACCCGGACGGATCAACGGCCGT
GTTTTGGCTCGGCTTCGACTTTGCGAAAGCCAAAGGTAACAAGCGTGTTT
TCAAAGCCAAAGCTAAAGTCGACGCATGTGCCCCAGAGACTCTGACAGTC
ACCGGCCTAGCTTACCTGGTGAATGCGACAGACCTGACAACCTACTGTGC
GACGCCGCTGGCAAGTCCCGCAGTCTTGAACGTGCGGTACTCGAAAGCCA
AGAAGGTGGCTACATGTGCGCCGACTCCTGCTCCGACCGTCAACCCCGCG
CAACCCTTTGTGTTGTTTGGCGATGGACAGCGATGTTTGGAAGCAAGCCG
ACTGGCACCATTCGACGATCGCCGCTTGTTGTCGAGCTCCAACGGACGCG
AATACGCGCACTCTATCCACCGTGAGCACCGGCATCTCCAATCGATAGCA
ACGCCAAGTGACTGCTTCACATACTGCTCTCTGAACGGAGGAGAGTCGgt
gcctttctttttcaactgGAACACGGTCACATCCCAGTGCTTCTGCTGCG
GGAACGTATGCACGTTGATTGTTGACCCAGCGTTCAGTGCGTATGAAGTG
ACCATGGACGCAACAAGCGCTCCAACGGCAGTTTCTACGGCTACTCCTAC
GCCTGCCCCTACGGCGTCGCCTACGCTTACCCCCACCGCGTCGCCCACGG
CAGTCCCCACGGCAACCCCGACTGCTGCTCCTACTGCATCGCCCACAGCT
GCTCCCACGAAATCGCCCACAGCTGCTCCCACAACATCGCCGACTGCTGC
TCCTACTGCATCGCCGACTGCTGCTCCTACTGCATCGCCCACAGCTGCTC
CCACGACATCGCCCACAGCTGCTCCTACTGCATCGCCGACCGCTGCTCCT
ACTGCATCGCCGACTACTGCTCCTACTGCATCGCCGACCGCTGCTCCTAC
TGCATCGCCGACTACTGCTCCTACTGCATCGCCGACTGCTGCTCCTACTG
CATCGCCGACTGCTGCTCCTACTGCATCGCCCACAGCTGCTCCTACTGCA
TCGCCGACAGCTGCTCCTACTGCATCGCCGACTGCTGCTCCCACTGCATC
GCCGACAGCTGCTCCCACGACATCGCCCACAGCTGCTCCCACGACATCGC
CGACC

Coding sequence (CDS) from alignment at CM002463.1:138128..139832+

>rna4270 ID=rna4270|Name=rna4270|organism=Nannochloropsis gaditana|type=CDS|length=1515bp|location=Sequence derived from alignment at CM002463.1:138128..139832+ (Nannochloropsis gaditana)
ATGCCTTATCTATCAGATGTACCGATGACTACTCTGTTATGGGTTACTTT
CCTCTCCACAGCACACACCCTAGGCATAAGACGTCCGACTCACAACACAG
ATAATATGCGCGTCCTTTTCGTATCTGCATGCCTCGTTGTACTTGGCATT
GCCTATGCCCCCACTGCAGTCGCGCAGGAATGTCCGACTCTCACCCTCAC
TGGCAAGGCGCGTCCGGGCTTCAAACGCGGAGTCTTGGCAGGTAAAGGTC
ATGCTAGGGTCACCGTCACTCTTCGAAGTAAAGAAGTCGTCGACGATCTC
AACTTCAAATTGTTGCTACCGACGGGTTTGTCACTTGTGCGTACCTCCAG
TCGTCCAAAGGCGCGCATTCACCCCGAAGTTGTCGAGAACCCGGACGGAT
CAACGGCCGTGTTTTGGCTCGGCTTCGACTTTGCGAAAGCCAAAGGTAAC
AAGCGTGTTTTCAAAGCCAAAGCTAAAGTCGACGCATGTGCCCCAGAGAC
TCTGACAGTCACCGGCCTAGCTTACCTGGTGAATGCGACAGACCTGACAA
CCTACTGTGCGACGCCGCTGGCAAGTCCCGCAGTCTTGAACGTGCGGTAC
TCGAAAGCCAAGAAGGTGGCTACATGTGCGCCGACTCCTGCTCCGACCGT
CAACCCCGCGCAACCCTTTGTGTTGTTTGGCGATGGACAGCGATGTTTGG
AAGCAAGCCGACTGGCACCATTCGACGATCGCCGCTTGTTGTCGAGCTCC
AACGGACGCGAATACGCGCACTCTATCCACCGTGAGCACCGGCATCTCCA
ATCGATAGCAACGCCAAGTGACTGCTTCACATACTGCTCTCTGAACGGAG
GAGAGTCGgtgcctttctttttcaactgGAACACGGTCACATCCCAGTGC
TTCTGCTGCGGGAACGTATGCACGTTGATTGTTGACCCAGCGTTCAGTGC
GTATGAAGTGACCATGGACGCAACAAGCGCTCCAACGGCAGTTTCTACGG
CTACTCCTACGCCTGCCCCTACGGCGTCGCCTACGCTTACCCCCACCGCG
TCGCCCACGGCAGTCCCCACGGCAACCCCGACTGCTGCTCCTACTGCATC
GCCCACAGCTGCTCCCACGAAATCGCCCACAGCTGCTCCCACAACATCGC
CGACTGCTGCTCCTACTGCATCGCCGACTGCTGCTCCTACTGCATCGCCC
ACAGCTGCTCCCACGACATCGCCCACAGCTGCTCCTACTGCATCGCCGAC
CGCTGCTCCTACTGCATCGCCGACTACTGCTCCTACTGCATCGCCGACCG
CTGCTCCTACTGCATCGCCGACTACTGCTCCTACTGCATCGCCGACTGCT
GCTCCTACTGCATCGCCGACTGCTGCTCCTACTGCATCGCCCACAGCTGC
TCCTACTGCATCGCCGACAGCTGCTCCTACTGCATCGCCGACTGCTGCTC
CCACTGCATCGCCGACAGCTGCTCCCACGACATCGCCCACAGCTGCTCCC
ACGACATCGCCGACC

Synonyms

Publications