rna4269, rna4269 (mRNA) Nannochloropsis gaditana

Overview
Namerna4269
Unique Namerna4269
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1727
Alignment locationCM002463.1:134009..137246 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100854g2.7439.mrna
Orig protein idgnl|cribi|Naga_100854g2.7439
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:134009..137246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100854g2gene4112Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26415.1cds4259Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4269rna4269-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4269 ID=rna4269|Name=rna4269|organism=Nannochloropsis gaditana|type=mRNA|length=1727bp
CATGCCATTTTTATTGGTCCAAGACGCATACAGACGCCACAAACCCTGTG
CACCAGAGCACTGCAGGGGAGCAGGCGAAGTCAAGTGGTGCTCGCCCACT
ACGATCGAATGATTTCCTCTTTGACAAAAATAAAGCAAGTCCTTGTCTCA
AGGACACAAGAAGAATTTAACCCAAACAACCATGAGTTGCCGTTGTACAT
TGCCACTGTCACGGAGGACGAAAAAGGACAAAGGAAGAGTGCTCTGACCG
TACTGTCTAAGTCACCCTTCCCTTCCCCTTCACCTTTACAGCTATGAGTA
TGGAAGTGGAGTCACCACCGATTACCCCGCTTCCACCCTCCTCCCTGTCC
CTGTCTTTGCCTCCACGGCCTGACCGACGCTTGGCCAATCAACTTCGCCC
TCCTATGTGTGAATTAGGTCCTCTAAACCGAGCAGACGGTTCTGCCCGCT
TTGCCCAGGGACAAACGAGTGTCTTGGCTGCCGTTTATGGACCGGCGGCA
CCACGATTTTCTCGAAAAGAACGTGTGGAAGGAGCTGCCGTGGAGGTGAC
CGTCCACCCACACTATGGTTTAGCTACATCGAGTGAAAAGGAGAAGGAGG
GGGCTGTGAAAGCCCTCTTGGAGGCGGCGATTTGCCTCGAACGCTTTCCC
CGGACGGTTATCCACGTTATTTGCCAAGTGTGCGAGGACAACGGGGGCCT
CATGGCGTGCCTGATGAATGCAGCGAGCCTCGCCGTCATTAACGCCGGCA
TCGACATGAAATACGTGCCATTGACCGTCTCCATGGCCCTGATCTCCCCG
CCCTCCGCCACGATGAAAGCACTTCCCTCTCTGCCTTCCTCCTCCTCTAC
AACGGCCCCTACCAGCAGCAGCACATATCTATTGCTCGATCCCATTAACG
AGGAAGAGCGCCAAAGCATAGCTACCATTACAATAGGCATAAGTAGTGTA
GATCAAAACGTGTTGTCCTGTCAAAGCATGGGCATAATGATGCCTTCCCA
GCTCTTTGAGGCAATTGATGTGGCTAAAGGAGCAGCAAAGGCTCTTATGG
CATTTTTACGAATGACCATTGAGGAGCACAGTCGGCACATTTCCAAAGAA
AAATAGTTTGCAGGCATGACGCAGGTGCAATCCCATGTTGTAATACTGAC
ATCGTGACTGCATTCAGCAGCAGCAGCACTGCCACAAATGCGACGCTGCG
CATCAAGACCAAGGCGGGAACGGAGGAAACGGTGGAGATGCCCATGCCGC
CGACGCATATTTGTCAATACGTGCCTGCCCCCGGCGAGGCAGTAGGATAC
AAAATCACTGTTCGTGTTGATGTGTTCGAGACGCGCGCAGACATGTGGCT
CCGTAACGTCATAGACAGGAGCGAGTGGGCGGAGCCTGTTGATCCCTCCC
AGCGGGACCGGGCCCTTATCCGGCGGGCGGCAGAGGTAGTCCAGGCGCTG
GGCGTCGGGGTGTACCTCACCGTCGTAGAGAAGAACAAAATTGCAACGCT
TCTTTACATCGTGCAATACCTGCATCCACTGGTGCCCGAGACAGCCCCCT
TCAAGGAAAATTTCCATCTACAGGAAGCGCTATGGAGGGTGGTAGAGGCG
CCGTGGGTGTCGCCCCTCGAAGCCAAGAATCCCAACCAGGTCACGCCCTT
CCCCCGCGATGGGAGGCGCCTGTACCTCGTAAAGAGAGGGGACCTCGGCG
ACAGGCGCAACGCCTTACTTTAAACCA
back to top

protein sequence of rna4269

>rna4269-protein ID=rna4269-protein|Name=rna4269|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MQYRFCLTYQWMQVLHDVKKRCNFVLLYDGEVHPDAQRLDYLCRPPDKGP
VPLGGINRLRPLAPVYDCMVRYNKCESFLNTKPVGWRGPSPILFKLRHRS
LPSTLLSPLRSHMSARVSNTSTRTVILYPTASPGAGTY
back to top

mRNA from alignment at CM002463.1:134009..137246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4269 ID=rna4269|Name=rna4269|organism=Nannochloropsis gaditana|type=mRNA|length=3238bp|location=Sequence derived from alignment at CM002463.1:134009..137246- (Nannochloropsis gaditana)
AAGTCCAATGCCGGAGGAAAACGTGATGCCGCAGACATGCCTACATGTTT
TTGGAAAAGATCAGCTTCCCGGTAAAATGAGGATATACTTCCTACACCCA
CCAGCATGGTGTTCCGAATTCAAGTGTAATGACATCTTCGAAGGTACTTT
GATGTCAATCGCAGTTGCGAGTGCGGTACCATAAAAGCCATTTCCCCATA
ATTAGTTCGTGTACCTTCATTTGTGTGTGGGATGAGTTGCACAAGCACAG
GTAAAGGCACATTGTCAAATAGCAGCGAAAACTATGACAGCTTCATACCT
TCGTGAACCAAAGCAAGCACGCTTTGAATCCAATGTCTCACATCAAACTC
CTTATCGTTTCTACTTTGCCATTCTTGCTGCATTTACTCCGCGGGCGATA
TCTTTTGCCTTTTCTGGCGCAAAGATCTCGCCTCGTGCCAGGTAACACTT
CTTTTCAAGTCCAGACAGTCTCTACGCTGGCCTCCCGTCCCCCCCCACCA
CCTGGTGGTTCAGCTGCTCGAATGAGCGCGCAAACTTCAGCTGGCGGAGT
GGTCCTATAATTTTTCGGACGGATTATCATCCGTCTCGCGAGGCGTCCCC
GCTCCTTTATCCTCTCCGAAAGCGATTTGAAAAGGTTCTCGTTGATGTTC
GGGATGGCCGCCAGACACTTCTTCGGCTGCCATTTCCTGGGGAGCTGCAT
CGTCTATACCACTCACTGACGCTGGGGTCGCTGATGCTGGCGCGAGCGGT
AGATTGTTGCTCAGATTCCTCTTCCTCTTCTAAGGCTTGGGCGGGCCTCT
GCTCCCCTCCGAGACACAAGTGGCGCTCTTCCGCCGGCTCCCGCCCCTCG
CCGCGGATTGAGGTGCCCCCGTCGTCACCACCCCGCCCCCCCCAGGAGGA
GCCTTCTTCCCGGCCAGCCCTTGGAGCTTCTCTAGCACACAGGGCTCCAT
GTGGCGTCGGATGTCCGGGTCGATGCAGCTGTTGTTATTTGGTCTTGAAA
TAACTACCTTCAGAGACTTTGGCTCTGTCTCCGCCAGTCTGGCGATCGCG
GGGTCCTGGTTGGGGGCGGCGGCGGTGGTCCGTACTACCGAAATCTTCAT
GGCGGAGGGGCTCGACGTCGGCCGGTAGTGTCGGCTCTTCTTCTTTCCCG
CCTGCCGTGGATGGCGTCACCCTCCGGTGCATTGGCCCGAAAGCTTGACT
TTTGGCCCCACGCCGGAGAGCTTGCACGCGAACTCCCGGCGGCCCTGGAT
GTGGTTAATGGAGGTGGCTACCATGGTGTGGTCCAACGCCCTCTGCAACG
CCACACTCAGGGAGGTATCTGCTGCCGCCACGCCCTTGCGAGGGAAGACG
TGACCCTCCTCGAGCGCCCAGTGAAGGCCCGGTATAGGAAATGAAACTCC
ATGTGAAATTTCCATTCCACGCGGGGGAGAGTCGAACTGGGTGGGGTGGG
AGGGAAGGACGTGAGAGGAAGCACGAGCGGCCGGTCCGTCTCCATAGCCA
CCAACACGCACATCCCTGTCCTTAGTGGGACTTTTCACGTGCCATGATTC
TATCGGCCGCAGTGGCACGCGCGTCTTGTCGTGCTTGATTGTCACGACGA
CGTCCTCCCGGCCCTTCCCCTCCGGCAGGACCAGCGCCTTGTCCACCATC
AGCTTCTCGACCGCCTCCGCCTCCAGGCCTTGAAGAGCGCTGTCCGCCAT
CTGCCGCCAGGGTTCCGCTATCTCCGAGAGCGGGACCATGGTTTAAAGTA
AGGCGTTGCGCCTGTCGCCGAGGTCCCCTCTCTTTACGAGGTACAGGCGC
CTCCCATCGCGGGGGAAGGGCGTGACCTGGTTGGGATTCTTGGCTTCGAG
GGGCGACACCCACGGCGCCTCTACCACCCTCCATAGCGCTTCCTGTAGAT
GGAAATTTTCCTTGAAGGGGGCTGTCTCGGGCACCTGATGAAGGGAAGTT
AGGAAGAAAGGGTCGAATCGTCAGGTAGCGAAGGGGCAAAGGGGAGAACA
CGCATGCAATATCGGTTCTGTCTCACGTACCAGTGGATGCAGGTATTGCA
CGATGTAAAGAAGCGTTGCAATTTTGTTCTTCTCTACGACGGTGAGGTAC
ACCCCGACGCCCAGCGCCTGGACTACCTCTGCCGCCCGCCGGATAAGGGC
CCGGTCCCGCTGGGAGGGATCAACAGGCTCCGCCCACTCGCTCCTGTCTA
TGACTGCATGGTACGATATAACAAGTGTGAGTCATTTTTGAACACGAAGC
CGGTGGGCTGGCGGGGACCCTCCCCGATACTTTTCAAATTACGCCATCGC
TCCCTCCCTTCCACTCTCCTCTCACCGTTACGGAGCCACATGTCTGCGCG
CGTCTCGAACACATCAACACGAACAGTGATTTTGTATCCTACTGCCTCGC
CGGGGGCAGGCACGTATTGACAAATATGCGTCGGCGGCATGGGCATCTCC
ACCGTTTCCTCCGTTCCCGCCTTGGTCTTGATGCGCAGCGTCGCATTTGT
GGCAGTGCTGCTGCTGCTGAATGCAGTCACGATGTCAGTATTACAACATG
GGATTGCACCTGTAGCGTAGAGGAGAGAGAATCACAAATCAGTGCCATCA
TCGGCCATGGTGGTGGCCATCCATAAATTTCAAACGAATACAGCCGTCGC
TCAAAATCGCGTCAAGATGGCGTGCGCGGGAAAGGCTTCACGCCTTCATG
CGCCTTAAAGATACAAGAACAGTGCGACAGTGAGAAATGCTAGTATCAAG
CAAAATACAATGTAAAACAAACTTCGACTGGGAGGCAAGACATGATGTAA
ATGCATTCAATAAGATGGCAATTTCGGCTGGTCAAACGTTCAAGACGGAG
GATGTCAACACAAGGCGACCCGGATGTGGGGTGACTAAAAGCACAGCAAA
AGTAGGTGACTCATTGTCCCCTCCTTGTAAATGTAGTACGAGACATACCT
GCGTCATGCCTGCAAACTATTTTTCTTTGGAAATGTGCCGACTGTGCTCC
TCAATGGTCATTCGTAAAAATGCCATAAGAGCCTTTGCTGCTCCTTTAGC
CACATCAATTGCCTCAAAGAGCTGGGAAGGCATCATTATGCCCATGCTTT
GACAGGACAACACGTTTTGATCTACACTACTTATGCCTATTGTAATGGTA
GCTATGCTTTGGCGCTCTTCCTCGTTAATGGGATCGAGCAATAGATATGT
GCTGCTGCTGGTAGGGGCCGTTGTAGAGGAGGAGGAAG
back to top

Coding sequence (CDS) from alignment at CM002463.1:134009..137246-

>rna4269 ID=rna4269|Name=rna4269|organism=Nannochloropsis gaditana|type=CDS|length=417bp|location=Sequence derived from alignment at CM002463.1:134009..137246- (Nannochloropsis gaditana)
ATGCAATATCGGTTCTGTCTCACGTACCAGTGGATGCAGGTATTGCACGA
TGTAAAGAAGCGTTGCAATTTTGTTCTTCTCTACGACGGTGAGGTACACC
CCGACGCCCAGCGCCTGGACTACCTCTGCCGCCCGCCGGATAAGGGCCCG
GTCCCGCTGGGAGGGATCAACAGGCTCCGCCCACTCGCTCCTGTCTATGA
CTGCATGGTACGATATAACAAGTGTGAGTCATTTTTGAACACGAAGCCGG
TGGGCTGGCGGGGACCCTCCCCGATACTTTTCAAATTACGCCATCGCTCC
CTCCCTTCCACTCTCCTCTCACCGTTACGGAGCCACATGTCTGCGCGCGT
CTCGAACACATCAACACGAACAGTGATTTTGTATCCTACTGCCTCGCCGG
GGGCAGGCACGTATTGA
back to top
Synonyms
Publications