rna4266, rna4266 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4266
Unique Name	rna4266
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1957
Alignment location	CM002463.1:120769..123612 -

Link to JBrowse

Properties


Property Name	Value
Product	phospholipase d
Orig transcript id	gnl\|cribi\|Naga_100454g3.2638.mrna
Orig protein id	gnl\|cribi\|Naga_100454g3.2638
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:120769..123612 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100454g3	gene4108	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26417.1	cds4256	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4266	rna4266-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:120769..123612-
coding sequence from alignment at CM002463.1:120769..123612-

mRNA sequence

>rna4266 ID=rna4266|Name=rna4266|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp
TCCCTGGCTGCCCTACATGACATCCCGGTGGTTTTCGGCTTGTCGGGACG
TCGGCTAGGGAAGTGCCTGGGGAAGAGCGTGCGGATCACGGTGGTGGGCG
TCCTCTCGGCAGATGGGGCCGTGGAGCGGTTCAGGGAAATCACGCGCCAG
GCCCGCGAGCTCTCGAGGTCGCAGGGGACGTGCCAGGAGAGGGCTGGGGC
AGGGGTGGAAGGCGGCTCCGTCAACAATTCCCCTCCCTTCTCTTTTCCCT
CCTACCATGGCTCCATCGGCCCGCAGGACCCTCCCTTCCCTCCCTCCCTC
CCTCCCCCCGTCACCATCTCGACCTCGGATCACGCCAATCGCTCTGTGCG
TGGTGATGCCTCTTTATCGATGATGGAGGCTTTGCACGGTTCTACGAACG
CCAGACCAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGA
GAGGAGAAGCACCGCAGTCGCGCGGGCATCTCCTCCCTCCAGCCCCACCC
CTTCTTCCCTCGTCAGCTGCTGCCTCCTCCGATACCTACCCCTTCCCTTC
CGAATGCACGGGACTCGAGTCCCTTTATAGACTGCTATCCCGCGCACGCT
CCACCCCCACACTTCCAGCCACATGGAGAACAATACCGCGAGCTTCAGCA
GCTGTCATATCAGGTCGACCGGCAAAATTTGGAGGCATCAGGGCAAGACA
CGTCATCCAATCAAGACATGTCTCGGGAAAAAGGGGATTCGTAGGTCCTT
CCCAGGAAAGAGCGTCCAGGAGGCAGGAGAAGGGAAGGCTACGGAGACTC
CGGCGGAGCACCTTCGTGGGCCTGGGGTCCTAGGCCTCGCGCTGCGATAC
TTATAGTCCCACATTACTTTGCCTTTTCCCCCCTCGCCTTTCGTACGAGT
ATCCTTGGTGATTCATTCGAGCTGGTGAAGACTAGATCAGTAAGCAGATT
AGAATCCGCTTGTATGAACATATGTCTCTTGGTGTCTCAAGTGTGTTTGA
TATTCTTGTATTTACATTTTTTGGGTTCGAAGCCGTCACTTGTTAGAATT
TAAATTGTTTCTGATTGAGTAACATGTTAGAAATGCGAATCCTTGACAAG
GCAAAGTTGTTTATGTATTTTTCTATTTAGTTGCAGAAAATTTGAAATCC
GTTTTCGGGAGATGTGTTGCTTTTAGACTTAGAAATACGACGGCAGCTTG
GCTGCAGAGGAAAAAAAAGTTGACGTGGCCAAAATCCAGGCGGTCGGGAA
CGAGTCGGCTTTGATGGCTTCGCTACGCGATACATGTAGCATCCTCTAGG
AGATGCCCAAAAGTGGCGTATTATAGATAGGCCACTGGGAGACCTTGAGT
TCAAACCCGATAGAGGAGAACGGCGACCGTGGTGGTGCTGAGCAAAGCAA
GCGATAGGAAGCCTTTTTGATTTTAGAAACCCCGATATTTGTTTACAAGA
AGAGTCATTGGCATGGAATGTACCGCGAGCCTTCTAGTTACTGTCTGCAG
AATGGACCACATGTCTTAGGACAAGCAGGATTGCGGGATAAAAGGGCGAT
CGTTCGAGTTTCGAGACGCCGCAGGGTACAAGAGAGAGGTAGCTTGCAAG
TTTTTTAGCTTTTGAGCAAGAGATAAGAGGAGGACAAGGACGATTTTGTG
TGCTTGAGGTATCGGTTATTGAATTGTTGAAGGCGCCCGTGACTTCTCCA
CATTGGCAACTCGACCCCGCGAGCCCGAAAACGATACACAAGTGTAATAA
CATTGGCCCTCTTCCCGCAAGGAGTGAACAAGCAATCGATGGCCGAGTAA
GAAGTAAATTTTGAGATCAAGCAAAAACCAGCCAATGATGGGAAAACGAG
AGAGCGAATGGGAGAAGAGGGATGGACGAAAATGAAACCACTGCGCAAGG
ATCTCTTGAACCCAAAAAGCAGAAATTGCGAGCAGGACGATGCCGGACAT
GGTACCA

protein sequence of rna4266

>rna4266-protein ID=rna4266-protein|Name=rna4266|organism=Nannochloropsis gaditana|type=polypeptide|length=860bp
MGRIHTLRTRPAPFPHAWIRNETLLCVDQEVGFVGSGLSFGLGKFDTPQH
VLKDEAAVVPRRVQDAQARPGTGVQARRPTWCGRDYQNPLVKDMCLVELA
HTSLELPYHHRGTVPRLPQHTACVAVTGSACHDLCWHFVNQWNLERAREM
EARHAISNARLRQEEFPFALPPPLLPVRLRVGPSLAGGIRPHHPPSHIQA
DTSSAETGGPAGVDGLARKTVTRLVFGTASSVARPVPSTEEDHGGPPRDV
FDAVEQEASQKLKEWLRPREERRQRRLLELQHDVNLTSQCQVLQFQALVE
PPVAPPSSRSWANEEVDTKTSLSFPRRHPPQGWAMNEEVEDDAVGCQDRK
SSSSSHRSPQLCRDVKEDKNVRVYSSPLSGSAPSSPSKQQLDLLAEAAKD
RTGTSQQGRKRQQRMHQYLRLRRALHVRELEAEEEEEVSLGPLASCHCRV
VRSLGAWSGALLEPQRSVLEAYEQVISNAEHYLYFENPTFISGVQGTADV
SNRLAEALLNRIVRAHDSQETFRVVFLLPLLPVYEGGLHGATPPMLTSAL
YQQLTSVNTLWRRLQDMVPRPDEYLQFFGLRSYTRLNGDPGKGLAPHLVS
EQIFVNSRLLVADDRYVVLGSAALNDRSLMGTRDSEMALVLEDTVWEPGA
MNHADYHAGRFARSLRLRLWGEHVGLLDEYVQRRVLEAAMMEDGREELLD
QEPAPEDVYAPLLDPSAAATWAYLRRVARKNTAILAHVFPQALPAHTVRS
IEALKHVVVDGTVSEATRTFVEEVLGEERAQEEEEILMDALLKEEEGEND
GGAFEDVGGVIRGGEHRDAVKEKLKWLGRLQGHLVEYPKEFLADDLTSLR
PVNGLQGWSL

mRNA from alignment at CM002463.1:120769..123612-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4266 ID=rna4266|Name=rna4266|organism=Nannochloropsis gaditana|type=mRNA|length=2844bp|location=Sequence derived from alignment at CM002463.1:120769..123612- (Nannochloropsis gaditana)
ATGGGCCGCATCCACACCTTGCGCACCCGCCCTGCCCCCTTTCCCCATGC
CTGGATTAGAAACGAGACGCTCCTGTGCGTGGACCAGGAGGTGGGCTTTG
TTGGCTCCGGGCTCTCTTTCGGGCTGGGAAAATTCGACACTCCGCAGCAC
GTGCTCAAAGACGAGGCAGCGGTGGTCCCGCGACGCGTGCAGGATGCCCA
AGCCCGTCCGGGAACGGGCGTCCAGGCACGCCGACCTACATGGTGCGGCC
GAGACTACCAGAACCCGCTGGTCAAGGACATGTGCCTGGTGGAGCTCGCC
CATACGTCCCTGGAGCTTCCTTACCATCATCGGGGCACGGTGCCCCGCCT
GCCCCAACACACAGCCTGTGTGGCCGTCACGGGCAGTGCCTGCCACGACC
TGTGTTGGCACTTTGTAAACCAATGGAATTTGGAACGGGCGCGAGAAATG
GAGGCGCGCCACGCCATTTCTAACGCCCGCCTGCGTCAGGAAGAATTCCC
CTTTGCCCTACCTCCCCCCTTGCTCCCAGTGCGCCTGAGGGTGGGGCCGT
CCCTGGCGGGTGGCATCCGCCCACACCACCCTCCCAGCCACATTCAGGCG
GACACAAGCAGCGCCGAAACCGGTGGTCCGGCCGGGGTGGATGGCTTGGC
TCGGAAAACCGTCACCCGCCTCGTCTTCGGCACCGCCTCCAGCGTTGCCC
GCCCCGTCCCATCCACCGAGGAGGACCACGGCGGACCCCCCCGGGACGTG
TTCGATGCAGTGGAGCAAGAGGCCAGCCAAAAGCTGAAGGAATGGTTGAG
ACCCCGGGAAGAGCGGCGACAACGGCGCCTGCTCGAATTGCAGCATGACG
TGAATCTGACCAGTCAATGCCAAGTCTTGCAATTCCAAGCTCTGGTGGAG
CCGCCCGTGGCCCCTCCTTCCAGTCGCTCATGGGCAAACGAGGAGGTAGA
CACGAAGACATCCTTGTCCTTTCCTCGGCGGCACCCGCCCCAGGGGTGGG
CGATGAATGAAGAGGTGGAGGACGATGCCGTCGGGTGTCAGGACCGAAAA
AGCAGCAGCTCCAGCCACCGCTCTCCCCAGCTGTGCAGGGACGTGAAAGA
AGACAAAAACGTCCGGGTATATTCCTCTCCTCTGTCGGGATCCGCTCCCT
CTTCCCCTTCCAAACAGCAGCTGGACCTGCTGGCAGAGGCTGCCAAAGAC
AGGACCGGGACCTCGCAGCAAGGCCGAAAGCGTCAGCAGCGCATGCACCA
ATACCTACGTCTCCGTCGAGCACTGCACGTGCGGGAACTGGAAGCGGAGG
AGGAGGAAGAAGTCTCCCTCGGTCCCTTGGCCTCCTGCCACTGCCGGGTG
GTCCGGAGCCTGGGTGCATGGAGCGGGGCCCTGCTAGAGCCCCAGCGCAG
CGTCTTGGAAGCCTACGAGCAGGTCATCTCCAACGCCGAGCACTACCTGT
ACTTCGAGAACCCCACCTTTATCAGCGGGGTCCAGGGCACCGCGGATGTG
AGCAACCGGCTGGCGGAGGCCCTCTTGAACCGCATTGTCCGAGCGCACGA
CAGCCAAGAGACCTTTCGTGTCGTCTTCCTCCTCCCCCTCCTCCCTGTGT
ACGAAGGAGGCTTGCACGGCGCCACCCCGCCCATGCTGACCTCCGCCCTA
TACCAGCAGCTAACCTCCGTCAACACGCTCTGGCGCCGTCTCCAGGACAT
GGTGCCCCGTCCCGACGAATACTTGCAATTCTTCGGCCTTCGTTCCTACA
CACGCTTGAATGGGGATCCTGGGAAGGGTCTGGCTCCCCACTTGGTGTCC
GAACAGATCTTCGTCAACAGCAGATTGCTCGTGGCAGACGACCGGTACGT
GGTGCTTGGCTCGGCCGCTTTGAACGACCGCTCCTTGATGGGCACGCGGG
ACAGCGAGATGGCCTTGGTATTGGAGGACACGGTCTGGGAGCCCGGGGCC
ATGAACCACGCGGACTACCACGCCGGTCGCTTTGCCCGCTCCCTGCGCTT
GCGCCTGTGGGGCGAGCACGTCGGCCTCCTGGACGAGTACGTGCAACGGC
GGGTGCTGGAAGCCGCCATGATGGAGGACGGCAGGGAAGAACTCCTCGAC
CAAGAGCCTGCGCCCGAGGACGTGTACGCACCGTTGCTGGATCCGTCTGC
TGCGGCCACCTGGGCCTACCTCCGCCGGGTGGCTCGAAAGAACACGGCCA
TCCTGGCGCACGTCTTTCCGCAGGCATTGCCCGCCCACACGGTGCGAAGC
ATCGAGGCGCTTAAACACGTGGTCGTGGACGGCACAGTCTCGGAGGCTAC
CCGGACGTTTGTCGAGGAAGTGCTGGGAGAAGAGCGGGCCCAGGAGGAGG
AAGAAATCTTGATGGACGCGCTCTTGAAGGAAGAGGAAGGGGAGAACGAT
GGAGGCGCCTTTGAGGACGTGGGGGGGGTGATCCGGGGGGGGGAGCACCG
AGACGCTGTCAAGGAGAAGTTGAAGTGGCTGGGTCGGCTCCAGGGACACC
TGGTTGAATACCCGAAAGAGTTTCTGGCGGACGATTTAACCTCCTTGCGG
CCCGTAAACGGGCTTCAGGGATGGAGCCTGTGATGGGACAGGGGGATAGA
AAGCACATTGCCCCATTTGCTGGCAAGTGCTATGGTCGATGTTGGCGACG
AGGAAGATAGCTTTACGATCCGTTTTTGCCAGAGCCATTGGATCACATGA
AGGGAAGTAATTCGAAACTTCACCCATTCTTTTCATAGCATCAACGAAAT
TTGCATACAATGGAAGCTTTGCCTGTCAGTGGTACCATGTCCGGCATCGT
CCTGCTCGCAATTTCTGCTTTTTGGGTTCAAGAGATCCTTGCGC

Coding sequence (CDS) from alignment at CM002463.1:120769..123612-

>rna4266 ID=rna4266|Name=rna4266|organism=Nannochloropsis gaditana|type=CDS|length=2583bp|location=Sequence derived from alignment at CM002463.1:120769..123612- (Nannochloropsis gaditana)
ATGGGCCGCATCCACACCTTGCGCACCCGCCCTGCCCCCTTTCCCCATGC
CTGGATTAGAAACGAGACGCTCCTGTGCGTGGACCAGGAGGTGGGCTTTG
TTGGCTCCGGGCTCTCTTTCGGGCTGGGAAAATTCGACACTCCGCAGCAC
GTGCTCAAAGACGAGGCAGCGGTGGTCCCGCGACGCGTGCAGGATGCCCA
AGCCCGTCCGGGAACGGGCGTCCAGGCACGCCGACCTACATGGTGCGGCC
GAGACTACCAGAACCCGCTGGTCAAGGACATGTGCCTGGTGGAGCTCGCC
CATACGTCCCTGGAGCTTCCTTACCATCATCGGGGCACGGTGCCCCGCCT
GCCCCAACACACAGCCTGTGTGGCCGTCACGGGCAGTGCCTGCCACGACC
TGTGTTGGCACTTTGTAAACCAATGGAATTTGGAACGGGCGCGAGAAATG
GAGGCGCGCCACGCCATTTCTAACGCCCGCCTGCGTCAGGAAGAATTCCC
CTTTGCCCTACCTCCCCCCTTGCTCCCAGTGCGCCTGAGGGTGGGGCCGT
CCCTGGCGGGTGGCATCCGCCCACACCACCCTCCCAGCCACATTCAGGCG
GACACAAGCAGCGCCGAAACCGGTGGTCCGGCCGGGGTGGATGGCTTGGC
TCGGAAAACCGTCACCCGCCTCGTCTTCGGCACCGCCTCCAGCGTTGCCC
GCCCCGTCCCATCCACCGAGGAGGACCACGGCGGACCCCCCCGGGACGTG
TTCGATGCAGTGGAGCAAGAGGCCAGCCAAAAGCTGAAGGAATGGTTGAG
ACCCCGGGAAGAGCGGCGACAACGGCGCCTGCTCGAATTGCAGCATGACG
TGAATCTGACCAGTCAATGCCAAGTCTTGCAATTCCAAGCTCTGGTGGAG
CCGCCCGTGGCCCCTCCTTCCAGTCGCTCATGGGCAAACGAGGAGGTAGA
CACGAAGACATCCTTGTCCTTTCCTCGGCGGCACCCGCCCCAGGGGTGGG
CGATGAATGAAGAGGTGGAGGACGATGCCGTCGGGTGTCAGGACCGAAAA
AGCAGCAGCTCCAGCCACCGCTCTCCCCAGCTGTGCAGGGACGTGAAAGA
AGACAAAAACGTCCGGGTATATTCCTCTCCTCTGTCGGGATCCGCTCCCT
CTTCCCCTTCCAAACAGCAGCTGGACCTGCTGGCAGAGGCTGCCAAAGAC
AGGACCGGGACCTCGCAGCAAGGCCGAAAGCGTCAGCAGCGCATGCACCA
ATACCTACGTCTCCGTCGAGCACTGCACGTGCGGGAACTGGAAGCGGAGG
AGGAGGAAGAAGTCTCCCTCGGTCCCTTGGCCTCCTGCCACTGCCGGGTG
GTCCGGAGCCTGGGTGCATGGAGCGGGGCCCTGCTAGAGCCCCAGCGCAG
CGTCTTGGAAGCCTACGAGCAGGTCATCTCCAACGCCGAGCACTACCTGT
ACTTCGAGAACCCCACCTTTATCAGCGGGGTCCAGGGCACCGCGGATGTG
AGCAACCGGCTGGCGGAGGCCCTCTTGAACCGCATTGTCCGAGCGCACGA
CAGCCAAGAGACCTTTCGTGTCGTCTTCCTCCTCCCCCTCCTCCCTGTGT
ACGAAGGAGGCTTGCACGGCGCCACCCCGCCCATGCTGACCTCCGCCCTA
TACCAGCAGCTAACCTCCGTCAACACGCTCTGGCGCCGTCTCCAGGACAT
GGTGCCCCGTCCCGACGAATACTTGCAATTCTTCGGCCTTCGTTCCTACA
CACGCTTGAATGGGGATCCTGGGAAGGGTCTGGCTCCCCACTTGGTGTCC
GAACAGATCTTCGTCAACAGCAGATTGCTCGTGGCAGACGACCGGTACGT
GGTGCTTGGCTCGGCCGCTTTGAACGACCGCTCCTTGATGGGCACGCGGG
ACAGCGAGATGGCCTTGGTATTGGAGGACACGGTCTGGGAGCCCGGGGCC
ATGAACCACGCGGACTACCACGCCGGTCGCTTTGCCCGCTCCCTGCGCTT
GCGCCTGTGGGGCGAGCACGTCGGCCTCCTGGACGAGTACGTGCAACGGC
GGGTGCTGGAAGCCGCCATGATGGAGGACGGCAGGGAAGAACTCCTCGAC
CAAGAGCCTGCGCCCGAGGACGTGTACGCACCGTTGCTGGATCCGTCTGC
TGCGGCCACCTGGGCCTACCTCCGCCGGGTGGCTCGAAAGAACACGGCCA
TCCTGGCGCACGTCTTTCCGCAGGCATTGCCCGCCCACACGGTGCGAAGC
ATCGAGGCGCTTAAACACGTGGTCGTGGACGGCACAGTCTCGGAGGCTAC
CCGGACGTTTGTCGAGGAAGTGCTGGGAGAAGAGCGGGCCCAGGAGGAGG
AAGAAATCTTGATGGACGCGCTCTTGAAGGAAGAGGAAGGGGAGAACGAT
GGAGGCGCCTTTGAGGACGTGGGGGGGGTGATCCGGGGGGGGGAGCACCG
AGACGCTGTCAAGGAGAAGTTGAAGTGGCTGGGTCGGCTCCAGGGACACC
TGGTTGAATACCCGAAAGAGTTTCTGGCGGACGATTTAACCTCCTTGCGG
CCCGTAAACGGGCTTCAGGGATGGAGCCTGTGA

Synonyms

Publications