rna4263, rna4263 (mRNA) Nannochloropsis gaditana

Overview
Namerna4263
Unique Namerna4263
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length345
Alignment locationCM002463.1:113404..113903 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100668g5.3086.mrna
Orig protein idgnl|cribi|Naga_100668g5.3086
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:113404..113903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100668g5gene4105Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4263rna4263-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26423.1cds4253Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4263 ID=rna4263|Name=rna4263|organism=Nannochloropsis gaditana|type=mRNA|length=345bp
ATGGCTCTTATGTGCATCAGAATGTGTATTTTTTTAAAACTGCATGTATC
AATCATTTTCGTGCTTCTTGTATGGGTTGTCGTCACTTGCCAGACAAGTG
ATCACCCCGCACATTGCAAATCCAAACAATCTGGTAAAAAGTTCTTGGCA
AATACCTTCTTTTCAAATGCAAGATGCCCGCGATCGAAAATTGTAGGACG
TCACCTCTCAACAGTTGTCGGTGATTGTAACGAGTTTGTACACACTTGGT
CCCATGCATTTTGTACTAAGAATGTGATCTTCAGGTGCTGGTCGTACAAA
GTCGGCGATAGAGTGAACACTAAGTTCTTGCTCTCTTCATGCTGA
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protein sequence of rna4263

>rna4263-protein ID=rna4263-protein|Name=rna4263|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MPISTNIPHLIRQIHIDTGFSIRAKAIQLVHTFSIEVGEDIGDLCSSSRA
QLRRLMWMKVAAHKVGVSQSTCAYLYTSQSPMVEAKTYLSEPIRKLRLSG
TKFD
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mRNA from alignment at CM002463.1:113404..113903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4263 ID=rna4263|Name=rna4263|organism=Nannochloropsis gaditana|type=mRNA|length=500bp|location=Sequence derived from alignment at CM002463.1:113404..113903- (Nannochloropsis gaditana)
ATGCCAATTTCTACGAACATACCTCATTTAATACGTCAAATTCACATAGA
TACAGGATTTTCCATAAGAGCTAAAGCCATTCAACTCGTACACAGTGCAT
GATCTAGTTGATGCTTACTCAGTCTTTGGAATGCTCAATTCGCATTGTAA
GCTTTTAGTATCGAAGTTGGCGAGGACATTGGGGACCTCTGCTCGTCCTC
GCGAGCACAATTAAGAAGGCTTATGTGGATGAAGGTGGCAGCTCATAAGG
TGGGAGTCTCCCAATCGACTTGCGCCTACCTGTTTATTGGCAATGTGAAG
GCAACATTCGGAGCCGATATCAATGCACGAGTTTTGAAGAAACCCTCGAT
AAAGATACTCTTCCTGTTTATTTTTTCTGAATATTTTCTCAGGGAACGTG
AAGTGTCAGGTACACTTCTCAGTCTCCTATGGTCGAGGCCAAAACTTATT
TGTCGGAGCCGATACGGAAGCTGAGGCTTTCAGGTACGAAGTTTGACTGA
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Coding sequence (CDS) from alignment at CM002463.1:113404..113903-

>rna4263 ID=rna4263|Name=rna4263|organism=Nannochloropsis gaditana|type=CDS|length=945bp|location=Sequence derived from alignment at CM002463.1:113404..113903- (Nannochloropsis gaditana)
GTACACTTCTCAGTCTCCTATGGTCGAGGCCAAAACTTATTTGTCGGAGC
CGATACGGAAGCTGAGGCTTTCAGGTACGAAGTTTGACTGACTTTTAGTA
TCGAAGTTGGCGAGGACATTGGGGACCTCTGCTCGTCCTCGCGAGCACAA
TTAAGAAGGCTTATGTGGATGAAGGTGGCAGCTCATAAGGTGGGAGTCTC
CCAATCGACTTGCGCCTACCTATGCCAATTTCTACGAACATACCTCATTT
AATACGTCAAATTCACATAGATACAGGATTTTCCATAAGAGCTAAAGCCA
TTCAACTCGTACACAGTACACTTCTCAGTCTCCTATGGTCGAGGCCAAAA
CTTATTTGTCGGAGCCGATACGGAAGCTGAGGCTTTCAGGTACGAAGTTT
GACTGACTTTTAGTATCGAAGTTGGCGAGGACATTGGGGACCTCTGCTCG
TCCTCGCGAGCACAATTAAGAAGGCTTATGTGGATGAAGGTGGCAGCTCA
TAAGGTGGGAGTCTCCCAATCGACTTGCGCCTACCTATGCCAATTTCTAC
GAACATACCTCATTTAATACGTCAAATTCACATAGATACAGGATTTTCCA
TAAGAGCTAAAGCCATTCAACTCGTACACAGTACACTTCTCAGTCTCCTA
TGGTCGAGGCCAAAACTTATTTGTCGGAGCCGATACGGAAGCTGAGGCTT
TCAGGTACGAAGTTTGACTGACTTTTAGTATCGAAGTTGGCGAGGACATT
GGGGACCTCTGCTCGTCCTCGCGAGCACAATTAAGAAGGCTTATGTGGAT
GAAGGTGGCAGCTCATAAGGTGGGAGTCTCCCAATCGACTTGCGCCTACC
TATGCCAATTTCTACGAACATACCTCATTTAATACGTCAAATTCACATAG
ATACAGGATTTTCCATAAGAGCTAAAGCCATTCAACTCGTACACA
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Synonyms
Publications