rna4262, rna4262 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4262
Unique Name	rna4262
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	222
Alignment location	CM002463.1:112854..113373 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100668g4.3085.mrna
Orig protein id	gnl\|cribi\|Naga_100668g4.3085
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:112854..113373 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100668g4	gene4104	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4262	rna4262-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26422.1	cds4252	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:112854..113373-
coding sequence from alignment at CM002463.1:112854..113373-

mRNA sequence

>rna4262 ID=rna4262|Name=rna4262|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGTTAGCAATTCAGTATATTAAGAAATCACTCTCCAATACTCCCTTTCC
GGAAAAGACGAGAAAAAGAGGCAAGAGTGCCAAGGCAGAGCGCTGCAACA
TGTACAACATCCTTAAATCAATATTTCATTGTGTTTTATCATGTATGTCT
CCATCTTTGAATCATTCACTCCGACCGCAGCAGTTTTCAGGCCACCTTGA
CCGAGCTCCAGAACATTCATAG

protein sequence of rna4262

>rna4262-protein ID=rna4262-protein|Name=rna4262|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MALMCIRMCIFLKLHVSIIFVLLVWVVVTCQTSDHPAHCKSKQSGKKFLA
NTFFSNARCPRSKIVGRHLSTVVGDCNEFVHTWSHAFCTKNVIFRCWSYK
VGDRVNTKFLLSSC

mRNA from alignment at CM002463.1:112854..113373-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4262 ID=rna4262|Name=rna4262|organism=Nannochloropsis gaditana|type=mRNA|length=520bp|location=Sequence derived from alignment at CM002463.1:112854..113373- (Nannochloropsis gaditana)
ATGGCTCTTATGTGCATCAGAATGTGTATTTTTTTAGTAGGGATTGTTTG
ATTGACCATCTATGACAGTTTCAATCCAAGAAACTGCATGTATCAATCAT
TTTCGTGCTTCTTGTATGGGTTGTCGTCACTTGCCAGACGTGTGGATGAC
AATTTGTACTTCTCTTGCACTTGAAAGATAGAAGTGATCACCCCGCACAT
TGCAAATCCAAACAATCTGGTAAAAAGTTCTTGGCAAATACCTTCTTTTC
AAATGCAAGATGCCCGCGATCGAAAATTGTAGGACGTCACCTCTCAACAG
TTGTCGGTGATTGTAACGAGTTTGTCTGAGCTTTCAGCGTCTACAGTCGG
TAGTTATATCAGCCCTTGACGCAAACCGCCAGTCTGCTGGGGCACCCCAT
GTACACGTATAGGTACACACTTGGTCCCATGCATTTTGTACTAAGAATGT
GATCTTCAGGTGCTGGTCGTACAAAGTCGGCGATAGAGTGAACACTAAGT
TCTTGCTCTCTTCATGCTGA

Coding sequence (CDS) from alignment at CM002463.1:112854..113373-

>rna4262 ID=rna4262|Name=rna4262|organism=Nannochloropsis gaditana|type=CDS|length=1380bp|location=Sequence derived from alignment at CM002463.1:112854..113373- (Nannochloropsis gaditana)
GTACACACTTGGTCCCATGCATTTTGTACTAAGAATGTGATCTTCAGGTG
CTGGTCGTACAAAGTCGGCGATAGAGTGAACACTAAGTTCTTGCTCTCTT
CATGCTGAAAGTGATCACCCCGCACATTGCAAATCCAAACAATCTGGTAA
AAAGTTCTTGGCAAATACCTTCTTTTCAAATGCAAGATGCCCGCGATCGA
AAATTGTAGGACGTCACCTCTCAACAGTTGTCGGTGATTGTAACGAGTTT
AAACTGCATGTATCAATCATTTTCGTGCTTCTTGTATGGGTTGTCGTCAC
TTGCCAGACATGGCTCTTATGTGCATCAGAATGTGTATTTTTTTAGTACA
CACTTGGTCCCATGCATTTTGTACTAAGAATGTGATCTTCAGGTGCTGGT
CGTACAAAGTCGGCGATAGAGTGAACACTAAGTTCTTGCTCTCTTCATGC
TGAAAGTGATCACCCCGCACATTGCAAATCCAAACAATCTGGTAAAAAGT
TCTTGGCAAATACCTTCTTTTCAAATGCAAGATGCCCGCGATCGAAAATT
GTAGGACGTCACCTCTCAACAGTTGTCGGTGATTGTAACGAGTTTAAACT
GCATGTATCAATCATTTTCGTGCTTCTTGTATGGGTTGTCGTCACTTGCC
AGACATGGCTCTTATGTGCATCAGAATGTGTATTTTTTTAGTACACACTT
GGTCCCATGCATTTTGTACTAAGAATGTGATCTTCAGGTGCTGGTCGTAC
AAAGTCGGCGATAGAGTGAACACTAAGTTCTTGCTCTCTTCATGCTGAAA
GTGATCACCCCGCACATTGCAAATCCAAACAATCTGGTAAAAAGTTCTTG
GCAAATACCTTCTTTTCAAATGCAAGATGCCCGCGATCGAAAATTGTAGG
ACGTCACCTCTCAACAGTTGTCGGTGATTGTAACGAGTTTAAACTGCATG
TATCAATCATTTTCGTGCTTCTTGTATGGGTTGTCGTCACTTGCCAGACA
TGGCTCTTATGTGCATCAGAATGTGTATTTTTTTAGTACACACTTGGTCC
CATGCATTTTGTACTAAGAATGTGATCTTCAGGTGCTGGTCGTACAAAGT
CGGCGATAGAGTGAACACTAAGTTCTTGCTCTCTTCATGCTGAAAGTGAT
CACCCCGCACATTGCAAATCCAAACAATCTGGTAAAAAGTTCTTGGCAAA
TACCTTCTTTTCAAATGCAAGATGCCCGCGATCGAAAATTGTAGGACGTC
ACCTCTCAACAGTTGTCGGTGATTGTAACGAGTTTAAACTGCATGTATCA
ATCATTTTCGTGCTTCTTGTATGGGTTGTCGTCACTTGCCAGACATGGCT
CTTATGTGCATCAGAATGTGTATTTTTTTA

Synonyms

Publications