rna4261, rna4261 (mRNA) Nannochloropsis gaditana

Overview
Namerna4261
Unique Namerna4261
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length549
Alignment locationCM002463.1:112312..112782 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100668g3.3083.mrna
Orig protein idgnl|cribi|Naga_100668g3.3083
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:112312..112782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100668g3gene4103Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4261rna4261-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26420.1cds4251Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4261 ID=rna4261|Name=rna4261|organism=Nannochloropsis gaditana|type=mRNA|length=549bp
ATGGAACTTCAATTAGTCAGTTTAATCATTCATAAGGAGCAGAAAACGTC
ATATCAATCATTTCCGTCCCTCAAAAGCCCCGATGCAACCAACCGCGTGC
CTTCGCTTATAGAAGAAATGAAATCGTCTTTTAGGCATTCCCCTAGACAC
CATACAGAGAGTGCTCAATTGTCGCGCCTTCCACATGAATACACTGTTTG
CGAAGCAACATTTATTGTTGCTGCGATTCAAACTCATTTGTCGCTGCTGA
AAGATTCAGTGGTGGACTCCTACGGTCTTTTTTTGGTCGTCGTGTGCGAG
TTTGTGGCTTCCAGAATCATCAAAACGGTGCGAAATTTAAATGATAAGCT
AGAGGACTTATTCTTTGGCCTTACAAAGGAATGTCAAGGGATTGATTTAA
CGACAAGGAAAGTCTCGGACGTGAGCGCGCTCGCAAGTAAAGCTCACACC
ACGAGCACCTATCCATTGAGCAGCGTGGATTCGCTTTTAGAGGTAAAGCA
AATCTGTAAAATCGCTTTTAGTTTTCAGCACGCTACTGTCGGACTTTGA
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protein sequence of rna4261

>rna4261-protein ID=rna4261-protein|Name=rna4261|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MLAIQYIKKSLSNTPFPEKTRKRGKSAKAERCNMYNILKSIFHCVLSCMS
PSLNHSLRPQQFSGHLDRAPEHS
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mRNA from alignment at CM002463.1:112312..112782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4261 ID=rna4261|Name=rna4261|organism=Nannochloropsis gaditana|type=mRNA|length=471bp|location=Sequence derived from alignment at CM002463.1:112312..112782- (Nannochloropsis gaditana)
ATGTTAGCAATTCAGTATATTAAGAAATCACTCTCCAATACTCCCTTTCC
GGTAAGTTAACTGCTCAGAGGGCACAGCATGTGTTTCAACTCTGACTCAG
CCACTTAGTTCCAACCAATTGGGCTGGTGAAAGATGACAATGCTCCTAAT
GCTCTGAGAATAGAGGTCATCAGAGTGATCACCGACCTGCATTTCAATGC
TTTTGGACAAAACCCTCGATTTTTCAAATACTCTCACATCACTCCAACAG
GAAAAGGTTACCGTCCATCCGTGCATGCGAGGTGCAGCTTGAAACGATAG
AGGTAGACGAGAAAAAGAGGCAAGAGTGCCAAGGCAGAGCGCTGCAACAT
GTACAACATCCTTAAATCAATATTTCATTGTGTTTTATCATGTATGTCTC
CATCTTTGAATCATTCACTCCGACCGCAGCAGTTTTCAGGCCACCTTGAC
CGAGCTCCAGAACATTCATAG
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Coding sequence (CDS) from alignment at CM002463.1:112312..112782-

>rna4261 ID=rna4261|Name=rna4261|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at CM002463.1:112312..112782- (Nannochloropsis gaditana)
ACGAGAAAAAGAGGCAAGAGTGCCAAGGCAGAGCGCTGCAACATGTACAA
CATCCTTAAATCAATATTTCATTGTGTTTTATCATGTATGTCTCCATCTT
TGAATCATTCACTCCGACCGCAGCAGTTTTCAGGCCACCTTGACCGAGCT
CCAGAACATTCATAGGAAAAGATGTTAGCAATTCAGTATATTAAGAAATC
ACTCTCCAATACTCCCTTTCCGACGAGAAAAAGAGGCAAGAGTGCCAAGG
CAGAGCGCTGCAACATGTACAACATCCTTAAATCAATATTTCATTGTGTT
TTATCATGTATGTCTCCATCTTTGAATCATTCACTCCGACCGCAGCAGTT
TTCAGGCCACCTTGACCGAGCTCCAGAACATTCATAGGAAAAGATGTTAG
CAATTCAGTATATTAAGAAATCACTCTCCAATACTCCCTTTCCGACGAGA
AAAAGAGGCAAGAGTGCCAAGGCAGAGCGCTGCAACATGTACAACATCCT
TAAATCAATATTTCATTGTGTTTTATCATGTATGTCTCCATCTTTGAATC
ATTCACTCCGACCGCAGCAGTTTTCAGGCCACCTTGACCGAGCTCCAGAA
CATTCATAGGAAAAGATGTTAGCAATTCAGTATATTAAGAAATCACTCTC
CAATACTCCCTTTCCG
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Synonyms
Publications