rna4247, rna4247 (mRNA) Nannochloropsis gaditana

Overview
Namerna4247
Unique Namerna4247
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length952
Alignment locationCM002463.1:71532..72501 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101868g1.4985.mrna
Orig protein idgnl|cribi|Naga_101868g1.4985
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:71532..72501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101868g1gene4089Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4247rna4247-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26436.1cds4237Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4247 ID=rna4247|Name=rna4247|organism=Nannochloropsis gaditana|type=mRNA|length=952bp
CCCGCTTGTCTTCCATTGAAGCGGAAGTATTTGCCATTGATCCCTCGTTT
TTTCAGCAAGTGTTGAACAATTTCGGAACAGATACATCTCCACCGGGCAC
AGTACGGGCTCACATATGGAGTCCTCAAGCCTCTGGGATGCATGCACTTG
GAAGCGTCTGCGAATCCGTAGAAGAGCCAACGCATCCTCTTCCTGCTTCC
ACTGCGTCGCCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGA
ATAGAAGCCTTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCG
AGCAATGGTACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTC
GATTTTTGCTTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGG
GGTGTTACTGGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCA
GGTGATCACTCAAAGCTACATTGAACAAGTGCGCGACGCGATCCCAGTGA
AGACGATTCGCGGCGTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAG
CCCCTTTGCAAAGGCAGGATCAAGATGCGAGGCTTCGTGGAGGAGCCCAA
CAAAGGCACCTTGGAGTACACGGGCTGCAACGACGGGAAGGGGAAAGGTA
ACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTCTCG
GCCCGATGGAAAGTCCGCTTCTCCGACGGCGAGTCGCTCATCTACCGGGG
AGACGTCTTGGCTGGCGGGAACTACGCCAAGGCCTCTGCCTCCATCACGG
ACGGCGAGATCCTCAAGCCCTTCACTGGGATCACTGGGAATTTGTCGGAA
AAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGTGATGACGA
GGAAAAGCTGTAATGCAGGGCCTTAAAGAACAAATAACAACTTTTCAAAT
TG
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protein sequence of rna4247

>rna4247-protein ID=rna4247-protein|Name=rna4247|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MSFLPLFPNLHRFRPNFSFQSAVLSCALSFPHRLVSPSLSPALPPAFLQV
TLHPFPLLSSALGSDSLGQPSDDDTGDSLPSLPPSLPPRLAEGIVLTFHA
GSEFPSSPPSSLPPEQLSSARVLFVLYNQQLETVYKATYPLAYLLPSLPP
SLPQREGKALYFWMGGRTEDRQGRG
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mRNA from alignment at CM002463.1:71532..72501+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4247 ID=rna4247|Name=rna4247|organism=Nannochloropsis gaditana|type=mRNA|length=970bp|location=Sequence derived from alignment at CM002463.1:71532..72501+ (Nannochloropsis gaditana)
atgtctttcctcccacttttCCCAAATTTGCATCGCTTTCGCCCCAATTT
TTCCTTTCAGTCCGCAGTGCTCTCGtgcgccctttccttcccacatcgcc
tcgtttctccctccctttcccccgccctccccccggccttcctccaggtc
accctgcatcccttccctctcctctcctccgccctgggGTCCGACTCTCT
CGGCCAACCCAGCGATGACGACACTGGCGAcagcctgccctccctccccc
cctccctcccgccgcgaCTCGCCGAGGGCATCGTCTTGACCTTCCATGCA
GGGTCAGagttcccttcctcacccccttcttccctacctccagAGCAGCT
GTCTTCGGCgcgcgtcctcttcgtcctgtACAACCAGCAACTTGAGACTG
TCTATAAAGCCACCTATCCCTTggcctacctccttccctccctccctccc
tccctccctcaaagggaggggaaggccctTTACTTTTGGATGGGAGGCAG
GACGGAGgacaggcaagggagggggtaggagggaggaagggggaagagga
aggaactaatcctcctccttccttttccagcTGACGTGCAGGGGAAGAAA
CAGTGGGTGCATGGACAggtgaggagagagggcggggggagggccggggg
aaggggggcggagggaacaGAGACGAGAGGCGTCGTTCCTGCGTTTATGA
TACGATAACCTTCTTTATTTAAGGCGCAGGTGTTCTTTGTTTTCCGTACt
cacgctccctcccaccctagGTAaccctcctgcttccctccccctcggcg
cCGAAGGAAGACATGGATGGGACCCCGGGTGGGccgcaggggagggggac
gaagcGCGTCCGTGGTCAAGAGCGtgacccccctccctccctccctccct
ctctcctcccctccgacctCTCGGCGGAATTTTTCGTCTACTGGGGAAAT
AGCACAGAAGTAGAGGGGGA
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Coding sequence (CDS) from alignment at CM002463.1:71532..72501+

>rna4247 ID=rna4247|Name=rna4247|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002463.1:71532..72501+ (Nannochloropsis gaditana)
atgtctttcctcccacttttCCCAAATTTGCATCGCTTTCGCCCCAATTT
TTCCTTTCAGTCCGCAGTGCTCTCGtgcgccctttccttcccacatcgcc
tcgtttctccctccctttcccccgccctccccccggccttcctccaggtc
accctgcatcccttccctctcctctcctccgccctgggGTCCGACTCTCT
CGGCCAACCCAGCGATGACGACACTGGCGAcagcctgccctccctccccc
cctccctcccgccgcgaCTCGCCGAGGGCATCGTCTTGACCTTCCATGCA
GGGTCAGagttcccttcctcacccccttcttccctacctccagAGCAGCT
GTCTTCGGCgcgcgtcctcttcgtcctgtACAACCAGCAACTTGAGACTG
TCTATAAAGCCACCTATCCCTTggcctacctccttccctccctccctccc
tccctccctcaaagggaggggaaggccctTTACTTTTGGATGGGAGGCAG
GACGGAGgacaggcaagggagggggtag
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Synonyms
Publications