rna4236, rna4236 (mRNA) Nannochloropsis gaditana

Overview
Namerna4236
Unique Namerna4236
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2287
Alignment locationCM002463.1:41210..42199 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100144g3.5972.mrna
Orig protein idgnl|cribi|Naga_100144g3.5972
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:41210..42199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100144g3gene4079Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4236rna4236-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26451.1cds4226Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4236 ID=rna4236|Name=rna4236|organism=Nannochloropsis gaditana|type=mRNA|length=2287bp
ATTAGTATCGCACAACGTCCAAAAATCCAAGGTAGCGAATGCTTAATCAG
CGGCAAAGCGGGAATAACTTGCGGAGGAACAGATCGTGGCATTTTCAATT
TGCCGCCAGGTACACCTTCTCTTTTCGAAACAACAAAGTCCCATGCATTA
TTTTCATCCTGCTGATCGTGAAGGGTGGGCGCTGGTTACATACAAGAGAA
AGACTTACCGATGCCACGTTTTTAGAGGGATCTTCTTGTCGGGTTTGGAC
ATGGTCGGCTTGAACTGCCGAATCCCTACCCCCCCCCTTCGTTTTTTGCA
TTTGAATTGAAACATAGATCTCTATTTTTGAGTCTTCGCATTTCTGATTT
AGGTCAGTTTTTGGAAAAGTAAACCTTTTTTAAATTCTAAATTGACTGCA
ATGTCGACATCGGCTATCACAGTACCGCATGTAATGCATCTGCCATGCTC
GATCCTGCTCGTCCTATCAAGCCTTCACTACACCACTTTTGCTGTCCATT
CATTCGTGGGCTCCAGCTTCGTTGAAAATTCGTCTGAGAATGAAGCGGTT
TTGTCCACGGTACCAGACTTGAAGTCTTTGTTACCCTCCACCGGCTGTCC
CAGAGGTCGAGGTTGCGGCCTACGAGGAGGCCTCGATCAATTGGAAACTT
CATATTCCTTTTCGACATCTCCCTCACCAACCTCGTCCATTGCCTATTCA
AATTCAAGAGATCTACCCAATATCCATGAAGGAAGTAGGGAGCCAGTCAT
TACCAATTTTGCCCCTTCACGTGTTAACCTGGTATCCGCGACTCAAAAGA
CAGAATCTGAAAGCACGGCGACTTTATCAGCTGCATTGCCCACAGCAACC
ACGCTACCTGCCCTCCTTGACCAGGATTCAGTCGTATCTACTGTCTATAA
TCAATCTGTGCAGCTCCAAAAGAAGGGGGCAAAGGGAAAAGACAAAATGT
GCGATCCAACTCCAGTGGACCGGCGCGTGGATCAGCTGGATTTAGAGGGA
GCCTGCGTGGGAAGCTGGGGAGGTTTTTACGACCGCATCGTTAGCGTGAC
GTTCAATGCGCGCACGTTGGAATCGCAGGCATTGAGAATTAGCTCTTTTT
GTGCCTCTCCCTGCGGTCCTTTGTTTGATAGGCAGGTGCGGGAATTTCGG
AACGCATGTCAAGAGGGTTTGATGAGGATGGAAGAGCAGGAGGATGAAGA
GGAGGAGGAAGAGGAGGAGGAGATGGAAGCAGGTGAAGGGGAGGAAGGAA
CATGGATTCCTGTGCCATCAGAGGAGCTGCTGATCTATCGAATGACAGGT
TTCATCGGGACCTTCGGCTGCGCTCAAGACACGGTCTCGGGTCGTCTCTG
TGCCGAGCTCATCGTTCGTTCCCTTTCTGCTTCCGCAAGCGCCAACGTGG
GCACTCCTACAGGCGTGGCCTGGACCAAGATCGGCAACGGGAAGCATCGG
AAAGCCGACCGCGAGAGGGAGGCAGCCGCCACCGCACAGGCCCTGGCTAA
AAAGGAAAAGTGCGCGTACTACACCTCCTGTTGTTTCGGCGAGATGATGA
AGACGCTGCGACTCGGGGAGCAGGCGGAGTTGGTGGAGGGCTTGGAGAGG
GTGTGCCCGGGTGCGAGGGAGGCAGCGAATGCCTCGTGCAGCAGGAGTGC
AGCCTCGGGGTAGGGAAAGAGGGAAAGAGGGGGGTGTCCTGGGAGCGAGA
AGCTGTAGAATCAAGAGGGGTGGAGACCTAAAGTTGGACTGCTGGCCTGC
AGGAGTGTTCTATATGACTTGAAGTAAATTGTAGAAAATTTTAAGACAGA
TAATCTCCTGCGGGTCAAACAAATACTGGCAAGAAACAGCCGCTCTTGGA
TGTTGCGGACATCATCGTAGTGAGATGTGTCGATCCTCAATATGTCTTCT
TCTTCTCGGTCCCTTCGCTCGTACACATACTGCATGTCAATTTACAATTC
TTGAGGCCCTCTCGAACGTCCACCCGGCGCCGATCCCCCACACTAGTTCC
TTCCCCCTACGTCCGCACACACGGGCTCAGCCCTCATCAACAGTACCACC
CTCATCTGTTCGTCCTATTCGTAATCATCCTGTCCACGGTTTCCTCCAAG
CTTTCCCCCTGCATACACCCTTATTCCCCGGCCCGAAACCGACTAGACCA
GGAGAACCGCATTGATGCATCCGTCCAGTTCGGGGTTGTTGGTTACCTGA
TACATGCAGACAGAGTGTGCGGTAAAGGGGTGAGTGTGAAAGTTATAACA
GGAGCCCAGAATAAAGAAAATTCCCTCATCATCATCT
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protein sequence of rna4236

>rna4236-protein ID=rna4236-protein|Name=rna4236|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MQNVHNLRGLLAVVSTALFVCLLIPARAQTQPHHSNILQRPDYTSGDFSS
DRNENIVSLASERVIASSEEIAGKNGGSLEAEGRELRIGDSAFAMMMTLN
ANYLRVNMWKDTTL
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mRNA from alignment at CM002463.1:41210..42199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4236 ID=rna4236|Name=rna4236|organism=Nannochloropsis gaditana|type=mRNA|length=990bp|location=Sequence derived from alignment at CM002463.1:41210..42199+ (Nannochloropsis gaditana)
CCAAACCCGACAAGAAGATCCCTCTAAAAACGTGGCATCGGTAAGTCTTT
CTCTTGTATGTAACCAGCGCCCACCCTTCACGATCAGCAGGATGAAAATA
ATGCATGGGACTTTGTTGTTTCGAAAAGAGAAGGTGTACCTGGCGGCAAA
TTGAAAATGCCACGATCTGTTCCTCCGCAAGTTATTCCCGCTTTGCCGCT
GATTAAGCATTCGCTACCTTGGATTTTTGGACGTTGTGCGATACTAATTT
AGACGCACTCTACCCACAGAATATCAAAGATTCGGGGTTCTATATATGCA
GAATGTACACAATTTGCGTGGTTTGCTAGCCGTGGTCAGTACAGCGCTTT
TTGTGTGCCTCCTAATTCCTGCAAGGGCCCAAACCCAACCGCACCATTCG
AATATTTTGCAGCGTCCTGACTACACAAGTGGTGACTTTTCTTCAGATAG
AAATGAAAATATAGTAAGTTTAGCATCTGAACGTGTAATAGCGTCGAGTG
AGGAAATAGCTGGAAAGAATGGAGGCTCGCTCGAAGCGGAAGGGCGTGAA
CTTCGCATCGGAGACAGTGCATTCGCTATGATGATGACCCTTAACGCGAA
CTACTTGCGGGTTAATATGTGGAAAGATACAACGCTGTGATATGTTGTAG
TTCACTTATGTTTCATTAGAGATACAAGGAATAAGGTAATGCCCCGTAAT
GGTTTAAATCCATTGAGAATATATTCCACAGCAATGAGGCCGAGCGGAGT
AGTCTTTTTTGGGATCAACTTTTCGTCACCTGGCCATGTACTCCCACATA
TTTAATCCCTGTACACATCAATGTCTCAATTATGCTTTCTCATACACGAA
TTTCGAGTTACTTTTTCGGATGGGGAGGCATTAGTTGTCTCTAATTGAGT
TCAAGGTTCCTGATATGGCCGGAATTCTGTTATTCCAGTGATAATGCCGG
TTGTTGGTTCATGGTTCAAAATACGAAGATCGCGCATTTC
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Coding sequence (CDS) from alignment at CM002463.1:41210..42199+

>rna4236 ID=rna4236|Name=rna4236|organism=Nannochloropsis gaditana|type=CDS|length=345bp|location=Sequence derived from alignment at CM002463.1:41210..42199+ (Nannochloropsis gaditana)
ATGCAGAATGTACACAATTTGCGTGGTTTGCTAGCCGTGGTCAGTACAGC
GCTTTTTGTGTGCCTCCTAATTCCTGCAAGGGCCCAAACCCAACCGCACC
ATTCGAATATTTTGCAGCGTCCTGACTACACAAGTGGTGACTTTTCTTCA
GATAGAAATGAAAATATAGTAAGTTTAGCATCTGAACGTGTAATAGCGTC
GAGTGAGGAAATAGCTGGAAAGAATGGAGGCTCGCTCGAAGCGGAAGGGC
GTGAACTTCGCATCGGAGACAGTGCATTCGCTATGATGATGACCCTTAAC
GCGAACTACTTGCGGGTTAATATGTGGAAAGATACAACGCTGTGA
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Synonyms
Publications