rna4232, rna4232 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4232
Unique Name	rna4232
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1311
Alignment location	CM002463.1:30505..34131 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100144g7.5977.mrna
Orig protein id	gnl\|cribi\|Naga_100144g7.5977
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:30505..34131 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100144g7	gene4075	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4232	rna4232-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26456.1	cds4222	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:30505..34131+
coding sequence from alignment at CM002463.1:30505..34131+

mRNA sequence

>rna4232 ID=rna4232|Name=rna4232|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp
ATGAACAAGGCCTGTGCCCTGCTACCAGAGACAATGTTTTATACTACGTA
CGCTATCTCCACCATCCACAGGGCAGGCTGTCGCCTCATCACCATGAGGA
GACCTCTTCAACTGCTACTTGCCTGCTATTGCCTCCTCGCCCTCCCCGTC
TCCTCCACCGCCTCCGCCTCCTCCCCGGGCTCGGTGATAAAGGTCACAGA
CAGTGCGAGGGCTTACAAAAAGAAGGATGTTTCGAAGACGGCTCTCACCC
AGCTTCGCCGCATCCAGGGCGGTGCTTCCTCCGCCTCCCCTGTGCCCACG
GGCTCGAGCCCCGGCCAGCGCGGTCCGGACGGAAAGGTGATCCCAACGGC
AGGACAGGCGTTCTTGACCGGCTTGCTCTCGGGGGCGGTGGCAGGTATCA
CGGTGGACCTGACCCTCTTCCCTCTGGACACGATCAAGACGCGCCTGCAA
GCCAGCGCCAACACCAAGTTCTCGCTCGACCTGCTCCGAGGCGTCTATGA
CGGGGTGGGCCCGGGTCTTGTGGCCTCAGCCCCCGCGTGCGCCGCCTTCT
TCGGAGCCTACGACAGCTTCAAGCGCGGCCTGTCGGCACGTTTCCCCGAC
CCCAAATGCGCGCCGCTCGTAAACATGGTGGCGGCGGCGGGAGGGGACCT
GACGCAGAGCGTGGTGCGCGTGCCTTTCGAGGTGGTGAAGCAGCGCATGC
AGGCGGGCGTGGAGAGAACATGGCGTGAGGCAGTGCGCAACATCATGGCT
TCCACAGGACCGCGTGGATTCTTCGCGGGCTGGTCAGCTCTTGCTCTTCG
AGACTTGCCCTTCGACATCATCGAGTTCCCTCTCTACGAGGCACTCAAGG
ACGTGTGGGCGGAGCGCAAAGGCGGAAAACTGGAGACGTGGGAGTCCTCT
GTCTGTGGCTCGCTCGCGGGGGGGATTGCGGCCGGGCTGACGACCCCGCT
GGACGTGGTTAAGACGCGGCTCATGACGCAGCGGCGGGACAGCGGGCAGG
TGTACGCGGGGCTCTTGGATTGCCTGGTGCGTGTGGCGCGCGAGGAGGGC
ATAGGCGCGCTGTACAAGGGCCTGGTTCCTCGCGTGGTGAACATCGCTCT
GGGAGGAGCCATCTTCTTCGGGGCTTATGAGGCCTTCAAATCGGTGGCGG
ACCGGGCTCTGGTGCAGAGGGATCTCGACGTGGGGGAATGGTGGACAGGA
GTGAAGGCCCGCGCTCATGAAATGCGCACACGGCAGTTTTCTCAGGGGGT
TGGAGGGGCATTGACGAGGCAAAAGGGTGGTGGAGGGGGTATGGGGAAGA
AGGTGATGTGA

protein sequence of rna4232

>rna4232-protein ID=rna4232-protein|Name=rna4232|organism=Nannochloropsis gaditana|type=polypeptide|length=438bp
MNAGSNRATGRVRSTWTSAREDKGRHCVDGHQAPSTGLIPAGAKQDGTRL
STDVAWPGGGAAGRSEARAPASMCIPGVAAIPFPGASANFAAGMSGGASQ
LPAGRPQAGELAQAGELAHASQRKGVTEGLWSALDAPSFSARIASMSNAD
IEALFAGKKTNFNAARGRGGRGGGRIAGRGQRKSLQAVRSEVSGEVRPPV
SVPQSVNSNVKCRGNEGTKSQQDERQGTHFVGQQPDSARDDATGLLHHEL
GSVENVNQDLKGMLPDRSVAVEKGQESLPFAPNLSSRIPSPAYRDCCLSP
LEPLHGSLTSDTCSQERENRRVDETLVPQGLQDQDFFDEQGMPLVDTEKI
GLPGPISPSSLAVSAHLQSNTEHSAPSAPGYVEFSEYPLNMLQSQLAGEQ
QQAMHLLQHHEQATGVDDLIVNEKEVIDLFKDGDIETW

mRNA from alignment at CM002463.1:30505..34131+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4232 ID=rna4232|Name=rna4232|organism=Nannochloropsis gaditana|type=mRNA|length=3627bp|location=Sequence derived from alignment at CM002463.1:30505..34131+ (Nannochloropsis gaditana)
GCCGTTCCAGCTCGACAGTCTCGTGCGGACCAATCTAACTGACGTCCCCC
TACGTATCTTCCAACTTGGAGGGAGTTGCAAAGGCTTCGTGCCTTTGTGT
GTATTAGAGAATGGGCTTTTATTCATCTCATCCGCTCAATTTCCGAGCTT
CGCATGTGGTCATTATGTAATGATGCGTGTTGAATATTGCGATACGGTAT
CACTGTCTATGTGGGATGCGAAGGCTACTCTCACCCATGATACTAACTTT
GATGCCGAAGACCCTTATTCGGGATCATTCAATAATAAACCTGTATAATT
TCATTGCTTTATTCATACCCAGTGTTTTGTAGCCATGCAGGTATCCAAGG
ATGTCCCCCGCAAAAGAGGCCACAATAGGAAAAAGACCTctggctcctcc
tctaccacaACTAAATCATCCAGCTCCCACTTGGCACGATGCCCCTCCCA
ACTTACTCCATCCGCTCTTTCAAAACTGGACCCGATGTGGCCATGCTATG
CATGTAGAGCATCTCGAACTAAATGTACGTGACTACTTAGGATCGATCGT
GCAGCGCACTACCTGGAGAATCAACTGGTTGACCTGGTTATTGACATCTG
TGCACTTGTTGTTTCTTCGGATACATTTTACTTGATCTCACCCAACAGGT
AGCGGAGGATTTCCTTGTGCCCGATGCTCCCGCCTCTCCGTATGTTGCCT
GCCCAATAattggaaaagggaggagcctATACTGGAGTATGTCCTGACGA
CCCACAGCCCTAAGGTATGCCACACACGCGAGGAGAATTACGGGCAGTGG
CAGGCAATGTCGACAGAACAGTGAGCTCCCTCCATAACTACTTTGTTACT
TGCCGGTCACATTTCACATTGCCTTGTCtcaatccttcctccttttctag
cCCTTCGCCGAGATGTATCTGCAGGCTTTCGAGCGGCTCTTCATCGCGGG
CAAGATTCGACGCGACAGTGCCCTGCGAACTTTGAAGATGTGGGAATTTC
TTTCCTCGCTTGCTGGAGCAGACGTGACGCTGGGCGTGGCGTCGCACGTT
CAGAAACGCTTCAACGTGTCGGCCATCGAGTTGGAGGAACCCATGCGGAT
GCTTCAAGACCCCCCTTCGCATGTCCGGtaagcctcctcgccttctctcc
cctttttcGCAGCGACCGCTCGTGTCCTCACTCACCGCTCCCTTTTCGGA
CCGTTCCCCCTGCCGCCCCCAGGTACCAACGGCTCCAGCAGTACCAATCG
AGCGCGGCTAGCCAGGCCCGGACGCAGCAGCTTAAGGAGACGGAGATCTT
CAAGCGGGAGAACGAGGGCACAcgggcctccagggcctctcTGCTCATGT
TCGTGACCAACGGATCCACCATGTGGGCGGCCTGCAATGAATTCCACGCC
GCTCGCCTCAAGGAGGCAACGGAGCTGTGGGACAAGGCTTTGCAACGCAA
GCTGATTTGGTCGTATCTGATGGCGCCGCTTTATGCGCCCGAGGACCGAC
GCACCTACATCGATAATATAGTGGAGATGATTTTCGGGCACGAGAAACTG
ACGAAAACCATGTTCTTTAAGATGTACGATAAGGACGGGAGCGTGAAACT
CTGCCTGCACACTGCTCGGACCATACGCCTGGGGCCGCACACGACCGGGA
TCACCTTCAAGATCGAGAGTGAGTAGGCCTGCGTAGAATTAGCTGGAAAC
GTTCTCACAAAGTCAGCCTGTCATCCCTGCCCCTTGGCGCCTTCGATGTT
TTCACACGATTGCCTCTCTATTTTGGCTCCATGTAATCATTCAATGCATC
CGAAGTCCCACGTTTAAAATCACAGTACACGttcccacccttttccccta
ccattacttcccccttcctccaacctcctggacccctccccccctcagtc
gttcctccgtcccggcATCTGACCATGAACGCGGGCTCAAACCGTGCGAC
CGGTCGCGTGCGCTCGACCTGGACCAGCGCCCGGGAAGACAAAGGGCGGC
ACTGTGTGGATGGCCACCAGGCTCCATCGACGGGCTTGATCCCAGCAGGC
GCCAAGCAGGACGGGACGCGTCTGAGCACGGACGTGGCGTGGCCAGGAGG
GGGCGCAGCGGGCAGAAGTGAGGCCCGAGCCCCAGCCAGCATGTGCATTC
CCGGCGTGGCAGcgatccctttccccggcGCCAGCGCCAACTTCGCTGCC
GGAATGTCCGGGGGGGCTTCTCAGTTGCCGGCAGGGCGACCTCAGGCGGG
GGAGCTGGCACAGGCGGGGGAGCTGGCACACGCATCGCAACGCAAGGGAG
TCACGGAGGGCCTTTGGTCCGCGCTGGATGCTCCGTCTTTCTCGGCACGC
ATCGCCTCCATGTCTAACGCGGACATCGAGGCTCTCTTCGCGGGGAAGAA
AACGAACTTCAACGCAGCGCGAggtcggggtggaagaggtggcgggcGTA
TCGCAGGAAGGGGACAGAGAAAATCGCTGCAAGCAGTGAGGTCAGAAGTC
AGCGGGGAGGTCCGCCCTCCGGTCTCGGTGCCCCAGTCCGTGAACTCGAA
CGTGAAATGTCGAGGGAACGAAGGCACCAAGAGCCAACAAGACGAGAGGC
AAGGGACGCATTTCGTAGGGCAGCAGCCTGACTCGGCGCGGGACGACGCC
ACCGGTCTTTTGCATCACGAGCTTGGCAGCGTCGAAAATGTCAACCAAGA
CCTGAAGGGGATGCTGCCTGACAGGAGCGTGGCAGTCGAGAAGGGCCAGG
AGAGCCTTCCTTTCGCTCCAAATCTATCTTCACGTATTCCCTCGCCGGCC
TACCGCGACtgctgcctttcccctttggAGCCTCTACACGGCTCCCTCAC
CTCGGACACCTGCTCACAGGAGCGAGAAAATCGAAGGGTGGACGAAACCT
TGGTGCCGCAAGGGCTTCAAGATCAAGATTTTTTCGACGAGCAGGGCATG
CCCCTAGTGGACACAGAAAAAATAGGTCTCCCGGGGcccatttctccttc
ttcccttgccgTTTCGGCCCATCTTCAGTCCAATACAGAGCACTCAGCTC
CCTCTGCTCCGGGCTACGTAGAATTCTCGGAATATCCCTTAAACATGCTT
CAATCACAGCTTGCTGGAGAGCAGCAACAAGCGATGCACCTGCTTCAGCA
TCATGAGCAAGCCACCGGGGTGGACGATCTGATAGTAAATGAGAAGGAGG
TCATAGACTTGTTTAAAGATGGAGACATAGAAACCTGGTGAGGGTTTCGT
AGTATTGTGGGAAAGAGGTATATAGATAACGATGTCTTGATGAGGACAAG
AGTGCATCTTAGactttcaaaattttctgAAGTCTCCGTTAAAATTTCGT
AAGAAAGAAGTGAATGGCACATATGTAAACCACTTATAAACCTATGAATG
GAGGCGCAAGCGCTTCAGAATCGAATGAGCATAAAGCGATCATGAATATC
ATGTCAGTTCAGACCACCAAAACGAAAGATGAGAAGCATAGCTGCTCACT
TATCGGGCGACTGTCTACGAGAATACAAACTGTTGGAAGTTGTGTGCTTC
CAACGTGAACCAACAATTGAAGAAACTTTGGCGTGCGCATGTCACAAACC
AAAAATAACATATTCAGAAAATTGACC

Coding sequence (CDS) from alignment at CM002463.1:30505..34131+

>rna4232 ID=rna4232|Name=rna4232|organism=Nannochloropsis gaditana|type=CDS|length=1317bp|location=Sequence derived from alignment at CM002463.1:30505..34131+ (Nannochloropsis gaditana)
ATGAACGCGGGCTCAAACCGTGCGACCGGTCGCGTGCGCTCGACCTGGAC
CAGCGCCCGGGAAGACAAAGGGCGGCACTGTGTGGATGGCCACCAGGCTC
CATCGACGGGCTTGATCCCAGCAGGCGCCAAGCAGGACGGGACGCGTCTG
AGCACGGACGTGGCGTGGCCAGGAGGGGGCGCAGCGGGCAGAAGTGAGGC
CCGAGCCCCAGCCAGCATGTGCATTCCCGGCGTGGCAGcgatccctttcc
ccggcGCCAGCGCCAACTTCGCTGCCGGAATGTCCGGGGGGGCTTCTCAG
TTGCCGGCAGGGCGACCTCAGGCGGGGGAGCTGGCACAGGCGGGGGAGCT
GGCACACGCATCGCAACGCAAGGGAGTCACGGAGGGCCTTTGGTCCGCGC
TGGATGCTCCGTCTTTCTCGGCACGCATCGCCTCCATGTCTAACGCGGAC
ATCGAGGCTCTCTTCGCGGGGAAGAAAACGAACTTCAACGCAGCGCGAgg
tcggggtggaagaggtggcgggcGTATCGCAGGAAGGGGACAGAGAAAAT
CGCTGCAAGCAGTGAGGTCAGAAGTCAGCGGGGAGGTCCGCCCTCCGGTC
TCGGTGCCCCAGTCCGTGAACTCGAACGTGAAATGTCGAGGGAACGAAGG
CACCAAGAGCCAACAAGACGAGAGGCAAGGGACGCATTTCGTAGGGCAGC
AGCCTGACTCGGCGCGGGACGACGCCACCGGTCTTTTGCATCACGAGCTT
GGCAGCGTCGAAAATGTCAACCAAGACCTGAAGGGGATGCTGCCTGACAG
GAGCGTGGCAGTCGAGAAGGGCCAGGAGAGCCTTCCTTTCGCTCCAAATC
TATCTTCACGTATTCCCTCGCCGGCCTACCGCGACtgctgcctttcccct
ttggAGCCTCTACACGGCTCCCTCACCTCGGACACCTGCTCACAGGAGCG
AGAAAATCGAAGGGTGGACGAAACCTTGGTGCCGCAAGGGCTTCAAGATC
AAGATTTTTTCGACGAGCAGGGCATGCCCCTAGTGGACACAGAAAAAATA
GGTCTCCCGGGGcccatttctccttcttcccttgccgTTTCGGCCCATCT
TCAGTCCAATACAGAGCACTCAGCTCCCTCTGCTCCGGGCTACGTAGAAT
TCTCGGAATATCCCTTAAACATGCTTCAATCACAGCTTGCTGGAGAGCAG
CAACAAGCGATGCACCTGCTTCAGCATCATGAGCAAGCCACCGGGGTGGA
CGATCTGATAGTAAATGAGAAGGAGGTCATAGACTTGTTTAAAGATGGAG
ACATAGAAACCTGGTGA

Synonyms

Publications