rna4210, rna4210 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4210
Unique Name	rna4210
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2235
Alignment location	CM002462.1:1144770..1147244 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100045g9.1678.mrna
Orig protein id	gnl\|cribi\|Naga_100045g9.1678
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1144770..1147244 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100045g9	gene4054	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4210	rna4210-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26486.1	cds4200	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1144770..1147244+
coding sequence from alignment at CM002462.1:1144770..1147244+

mRNA sequence

>rna4210 ID=rna4210|Name=rna4210|organism=Nannochloropsis gaditana|type=mRNA|length=2235bp
ATGGCGGACGCAGTCTACCAAGCTCTGGACCGGATGCTTCCGGCTCTGGA
GGATTTGCAAATACGTGGGCTTTTCACACCGGAGGAGGTCCGCGCAATAG
CTAGCAAACGTAGGGACTTTGAGTTCCTTCTGCGTCGTCGCACGGCTCGC
AAAAATGATTTCCTCCGATATATCACACACGAGCTAAACCTGGAGGAGCT
TCGTCACCTCCGGAAACATAAGGCTGGTCTCGTCAAGACCTCGCTGAGCG
ACCACGCAGGCAGGGGACTCATCCATTTTATTTTCGAACGAGCGCTGCGC
AAGTTTCGGGGTGACTTGGAGCTCTGGCTTCAATACCTGGACTACTGTGA
GTCCACCGGCTCCCATAAAGCCCACTCCCGCGCCCTCGCCCAAGCCCTGC
AGCTCTTCCCTCGCACTGCCGGCCTCTGGATCCGCGCAGCTTCCTACGAG
TTCTTCGAGCGGGCATCCCCGCCCGCCGCGCGCGTGCTCATGCAGCGAGG
TCTACGCTTGAATGCCAGTGATTCGGCCTTGCTGTGGACGCAGTATTTCA
AATTGGAAGTCCTGTACGTGATGAAGCTGAAGGGACGGAGGACGGCGTTG
GGGTTGGAGGGGGAGGAAAGGGAAGGAAAGGGGGAGGAGGGGGAGGAAAA
AGAAAGTGTGCAGCTACCCCTTGTGGAAGGTGAGGAGGGAGGAGTGGAGG
GAATGAAGGAGGTAGAGCCAGAAGAGGATCTCAGAGACCGAAGCGTGCGG
GCAGTCCTGGCGGGCGCAGTTCCGCGGGTGGTGTACTTGGCGGCGATCGA
GGCGAGGCCACGAGACCTGGACATGCGTCTCTCCTTTCTGAAGGCACTGG
AGGAGGCGGAGACCCTGGAGGGTGGAGTGGCAGGCGCGGAGAGCGGGCAA
ACGTGGGGCCCGTTGGTGGAGGAGGTCCTGCAGGGGGTGGAGGAGGCCTT
CGGAGCGGCGGATGCGGCCTGGGCGAGGGCGAGGCACGTACTGGCGGGGG
TCGGGGGCTTGAGAGAGGTAGACGAGATGACAAGGAAGAGGAGAAAGGAC
GCCGGGAAGGAGGGAGCTCGGAGCTCTGCCTTGGGCGGCAGCGCTAGGAA
GAGGGGGCGCCGGTCCTCGCTCTCCTTGCCGTCGGGGGGGGAATCAGAGG
CAGCCGAAGCCTGGAAAGAGAGCCTGAGGGACGGCCCTCGGAGGTGTTTG
CAGGCGCTGGAGACGGGTGTTGGGAGGGTCGCCGGTATCAAGGAGGGCAA
GGAGGCGGAGAAGATGTGGCACTACTACCTTCGAGGCCTCTGCGAGTTCC
TCCACGCCCCCGTGTCTGTCCTCCGGGTCGCTTTTCCCCAGGCCCAGGCT
GCATTGAGTGCGAATCAGGGGACAAGCCTCCTGGCTCCCGCCATGTATTT
AAGGTGGGCGGCCTTGTGGGTGCCGGCGACGGTACTGTCGTCGCAGACAG
AAGGTGAGGGGCAGGGGGAGGGTTACAAGGAGGAGGGGGAGAGGACGGAC
GTGGGCGAAGCACGACGTATACTGGCCAGGGGAGTGGAGGGTCACCAGGA
CAATGCCCGTTTGTGGGAGGCGAGATTGCGGGCGGAAGCTTGGGGGCAAG
GGGGAAGGGTGGAGGAGGTGTTTGGGATGGCGCAGCAGGCACTGGGACCG
ACGGCGGGGATCGATAGCAGAGAGGAGGAGGAGGTTGGCGGGGGGGAGAG
ACGAAGGTGTGCGGTCGCAGGCTGCTGGTATGTGTATTTGGAGTGGTTGA
TGCAGCAAGGGGTGACAGAACGGGAGAAGGAGGGTGAGGGAGGGGACACC
GACAGCAGCAGCGACGAGGAGGACGAGGACGAGGAGGAGGGCGGGGCAGC
AATGGAAGCAAATTCACGCAAGGTAGAGAATGCCCTGGAGCAAGCCTTGA
TCAGCACGCGAGGATTAGGACGCGTGGCAATTTGTGAGCTTTGGCATCGA
TACACAGGCCTGACGGGGCTGCAGAGGGCGTTGTCTGCAATGGGAGAGGG
AGGGATAGAGGAGCAGGAGGCTATGGCAGCCTTATGCCAGCGCGCGATGC
GTGGAGATTGTAGCGGACTCACAGTCGCGTGGTTTGAGGCAGCCCTGGCG
TTTTGCGGGCGAGTAAGAGCACAACAGGCAGCTGCGCTGTGGGATGAGTA
CGAAGCATTTGAACGTGCTCAAGGTAGACATCGGGCAGCTAACAATGTGA
GGTGGCGTAGAGCAAAAGCAATGGGCGAAGAATAG

protein sequence of rna4210

>rna4210-protein ID=rna4210-protein|Name=rna4210|organism=Nannochloropsis gaditana|type=polypeptide|length=824bp
MPGAEWYFARAVISSLSILASGSEEGQPEKVGRHIKGPIATLLLKEGKLW
RWTYHKLVRVGLLLLPRVSYVKRIIIDILLRFGAICGTLHNIFMRYGLIH
EEREKWCKNIAAGVIRIYITCGGFWNPYSSFVFAVLTFLGASKIRKCRKQ
TQQGIMDTMVGDDLDHALGTHMFEPESRSAEPDRVVEETLAYDEVRHLEE
QEQKRRHALETLRNKQQRSLLIVLRLAAAQRAAAEAQAMVRTYWRSWQLL
RSLYVEERNEAQAWNVRKWRLKQWWYQFDTRFEALTAWVNGRSQPEPRGF
STHLDSTHSGGDSLACLYSRLARALGPCKYKCMWPSLDAQIEDVHRKLQW
KESAELAALRSEILCRYWRDCGVARQRMWGRGLWAVLMSSGAIRHSTPPL
LQYWTPQPREELRLRSLVPVSVKKQYASVDVVHAIEIRALGHVTATTTLK
WGDPMRVRLFGVTVGAGGVMALSPTLDLLRDWLDRSTRDKLAKVVSASVK
LLEERRLLEVEPVLTTNERMLRRRVRARTLRFLTEQDLNALEMAVVEARE
ILPMESERWKRLLLSCQTLPSAVAQECVRRRCGRRTGVWKGMGGGASTPW
PEALEIRMELHGRPPPRQALACHVRLRARLLLLQYSSQENKMIKSVATDI
IGPDKGLRNQRDDVRKNSAIGSVKLDTGVSSGAIYITSKVHHVPESSTAL
GYASLPHLLHRHGTASSSPPGSRHRTLSPSLLSHWSRRARRKTRLLLALY
IIGAYGIPAYVFCVWIWHLCMQWTNVIQVDERDAVLIERGKGSKAPTLDD
VLHSLPEVATKVSKTMGWRDENEC

mRNA from alignment at CM002462.1:1144770..1147244+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4210 ID=rna4210|Name=rna4210|organism=Nannochloropsis gaditana|type=mRNA|length=2475bp|location=Sequence derived from alignment at CM002462.1:1144770..1147244+ (Nannochloropsis gaditana)
ATGCCAGGTGCAGAATGGTACTTTGCACGCGCAGTCATTTCGAGCCTCTC
CATCTTGGCTTCTGGAAGTGAGGAAGGACAGCCCGAGAAGGTCGGAAGGC
ACATTAAAGGCCCGATAGCAACGTTGTTActgaaagaaggaaaattgTGG
CGCTGGACATACCACAAACTTGTCAGAGttggccttctcctcctcccccg
tgtTTCTTATGTAAAGCGTATAATCATCGATATCCTTCTTCGGTTCGGGG
CTATCTGTGGTACTTTGCACAATATTTTTATGAGATACGGCCTGATacac
gaagaaagggagaaatggTGTAAAAACATAGCAGCTGGAGTGATTAGAAT
TTACATCACGTGCGGTGGGTTCTGGAATCCATATTCATCATTCGTGTTTG
CTGTCCTAACGTTTCTTGGGGCGAGTAAGATCCGGAAGTGCAGAAAACAG
ACCCAGCAGGGGATTATGGATACGATGGTCGGTGATGATTTAGACCATGC
ACTTGGGACTCATATGTTTGAGCCAGAAAGTCGAAGCGCGGAGCCGGATC
GAGTGGTGGAAGAAACGCTAGCTTACGACGAAGTCCGACATCTAGAGGAG
CAAGAGCAGAAGCGGCGACATGCACTGGAAACACTGCGGAACAAACAACA
AAGAAGTCTGCTGATAGTCCTTCGGTTAGCAGCAGCCCAGCGTGCAGCCG
CAGAAGCGCAGGCTATGGTACGCACCTACTGGCGAAGTTGGCAGTTGCTA
CGCAGTCTCTACGTCGAAGAGCGAAACGAAGCTCAAGCGTGGAATGTGCG
CAAATGGCGCTTGAAACAATGGTGGTATCAGTTCGATACGCGTTTTGAGG
CTTTGACAGCTTGGGTGAACGGGCGCTCCCAGCCAGAGCCTCGAGGTTTC
TCGACGCACTTGGACAGCACTCATTCAGGAGGCGACAGCCTAGCTTGCCT
GTACAGTCGTCTCGCCCGAGCCTTAGGGCCTTGCAAGTACAAATGCATGT
GGCCGAGCTTAGATGCCCAGATTGAGGATGTCCATCGCAAGTTGCAGTGG
AAAGAATCTGCCGAGCTAGCGGCGCTGCGTTCTGAGATTTTGTGTCGCTA
CTGGCGCGATTGTGGGGTAGCCCGCCAGAGAATGTGGGGCCGAGGCCTGT
GGGCAGTCTTGATGAGCAGCGGAGCGATCCGACACTccacgcctcctctc
ctgcagTATTGGACGCCGCAACCCCGAGAGGAGCTGCGTCTCCGGTCGCT
GGTACCGGTGAGCGTCAAGAAACAGTATGCCAGTGTAGACGTCGTGCATG
CCATAGAAATTCGGGCTTTAGGGCACGTCACCGCGACAACAACCTTGAAA
TGGGGTGATCCGATGCGCGTGCGTCTCTTCGGAGTGACCgtaggagcagg
gggagtAATGGCTTTGAGTCCGACGCTGGACCTTCTGCGAGACTGGCTAG
ATAGGTCGACGCGGGATAAGCTAGCCAAGGTGGTATCCGCCAGCGTCAAG
CTCCTTGAAGAGCGCCGGCTCCTGGAGGTTGAGCCAGTTCTCACCACAAA
CGAACGGATGCTTCGGAGACGCGTGCGAGCTCGGACGCTCAGATTCCTAA
CGGAGCAGGATTTAAATGCTCTGGAGATGGCAGTTGTCGAGGCGAGAGAG
ATTCTTCCTATGGAAAGCGAGCGATGGAAGCGACTCCTCCTGTCATGTCA
AACATTGCCCTCGGCAGTCGCTCAAGAATGCGTGAGACGCCGCTGTGGGA
GACGTACGGGTGTGTGGAAAggaatggggggaggagccagcACTCCGTGG
CCGGAAGCTTTGGAGATCCGTATGGAGCTCCATggtcgccctccacccag
gCAGGCCCTTGCTTGCCATGTCCGCCTTCGCGCACGTCTGCTGCTTTTGC
AATATTCTTCGCAAGAAAATAAAATGATCAAGTCGGTTGCTACTGATATA
ATTGGACCAGATAAAGGCCTGCGTAATCAGAGGGATGACGTGCGAAAAAA
TTCGGCCATAGGCTCGGTAAAGCTCGACACCGGTGTATCATCTGGGGCCA
TTTACATAACATCAAAGGTACATCATGTCCCCGAAAGCTCGACAGCATTA
GGttacgcctccctcccgcacctcTTGCACCGCCACGGCACTGCATCATC
CTCGCCTCCAGGCTCCCGTCACAGGACACTATCACCTTCGCTCCTCAGTC
ACTGGTCGCGAAGAGCCAGACGTAAAACGAGGCTTCTTCTTGCACTTTAT
ATCATAGGAGCGTATGGTATTCCAGCGTACGTGTTTTGTGTGTGGATTTG
GCACTTATGCATGCAATGGACGAATGTCATCCAAGTGGATGAAAGAGATG
CCGTCTTGATAGAACGGGGAAAGGGCTCCAAAGCTCCTACCCTGGACGAC
GTGCTTCACTCGCTCCCCGAAGTGGCTACAAAGGTATCCAAAACAATGGG
CTGGCGTGATGAAAATGAATGCTAG

Coding sequence (CDS) from alignment at CM002462.1:1144770..1147244+

>rna4210 ID=rna4210|Name=rna4210|organism=Nannochloropsis gaditana|type=CDS|length=2475bp|location=Sequence derived from alignment at CM002462.1:1144770..1147244+ (Nannochloropsis gaditana)
ATGCCAGGTGCAGAATGGTACTTTGCACGCGCAGTCATTTCGAGCCTCTC
CATCTTGGCTTCTGGAAGTGAGGAAGGACAGCCCGAGAAGGTCGGAAGGC
ACATTAAAGGCCCGATAGCAACGTTGTTActgaaagaaggaaaattgTGG
CGCTGGACATACCACAAACTTGTCAGAGttggccttctcctcctcccccg
tgtTTCTTATGTAAAGCGTATAATCATCGATATCCTTCTTCGGTTCGGGG
CTATCTGTGGTACTTTGCACAATATTTTTATGAGATACGGCCTGATacac
gaagaaagggagaaatggTGTAAAAACATAGCAGCTGGAGTGATTAGAAT
TTACATCACGTGCGGTGGGTTCTGGAATCCATATTCATCATTCGTGTTTG
CTGTCCTAACGTTTCTTGGGGCGAGTAAGATCCGGAAGTGCAGAAAACAG
ACCCAGCAGGGGATTATGGATACGATGGTCGGTGATGATTTAGACCATGC
ACTTGGGACTCATATGTTTGAGCCAGAAAGTCGAAGCGCGGAGCCGGATC
GAGTGGTGGAAGAAACGCTAGCTTACGACGAAGTCCGACATCTAGAGGAG
CAAGAGCAGAAGCGGCGACATGCACTGGAAACACTGCGGAACAAACAACA
AAGAAGTCTGCTGATAGTCCTTCGGTTAGCAGCAGCCCAGCGTGCAGCCG
CAGAAGCGCAGGCTATGGTACGCACCTACTGGCGAAGTTGGCAGTTGCTA
CGCAGTCTCTACGTCGAAGAGCGAAACGAAGCTCAAGCGTGGAATGTGCG
CAAATGGCGCTTGAAACAATGGTGGTATCAGTTCGATACGCGTTTTGAGG
CTTTGACAGCTTGGGTGAACGGGCGCTCCCAGCCAGAGCCTCGAGGTTTC
TCGACGCACTTGGACAGCACTCATTCAGGAGGCGACAGCCTAGCTTGCCT
GTACAGTCGTCTCGCCCGAGCCTTAGGGCCTTGCAAGTACAAATGCATGT
GGCCGAGCTTAGATGCCCAGATTGAGGATGTCCATCGCAAGTTGCAGTGG
AAAGAATCTGCCGAGCTAGCGGCGCTGCGTTCTGAGATTTTGTGTCGCTA
CTGGCGCGATTGTGGGGTAGCCCGCCAGAGAATGTGGGGCCGAGGCCTGT
GGGCAGTCTTGATGAGCAGCGGAGCGATCCGACACTccacgcctcctctc
ctgcagTATTGGACGCCGCAACCCCGAGAGGAGCTGCGTCTCCGGTCGCT
GGTACCGGTGAGCGTCAAGAAACAGTATGCCAGTGTAGACGTCGTGCATG
CCATAGAAATTCGGGCTTTAGGGCACGTCACCGCGACAACAACCTTGAAA
TGGGGTGATCCGATGCGCGTGCGTCTCTTCGGAGTGACCgtaggagcagg
gggagtAATGGCTTTGAGTCCGACGCTGGACCTTCTGCGAGACTGGCTAG
ATAGGTCGACGCGGGATAAGCTAGCCAAGGTGGTATCCGCCAGCGTCAAG
CTCCTTGAAGAGCGCCGGCTCCTGGAGGTTGAGCCAGTTCTCACCACAAA
CGAACGGATGCTTCGGAGACGCGTGCGAGCTCGGACGCTCAGATTCCTAA
CGGAGCAGGATTTAAATGCTCTGGAGATGGCAGTTGTCGAGGCGAGAGAG
ATTCTTCCTATGGAAAGCGAGCGATGGAAGCGACTCCTCCTGTCATGTCA
AACATTGCCCTCGGCAGTCGCTCAAGAATGCGTGAGACGCCGCTGTGGGA
GACGTACGGGTGTGTGGAAAggaatggggggaggagccagcACTCCGTGG
CCGGAAGCTTTGGAGATCCGTATGGAGCTCCATggtcgccctccacccag
gCAGGCCCTTGCTTGCCATGTCCGCCTTCGCGCACGTCTGCTGCTTTTGC
AATATTCTTCGCAAGAAAATAAAATGATCAAGTCGGTTGCTACTGATATA
ATTGGACCAGATAAAGGCCTGCGTAATCAGAGGGATGACGTGCGAAAAAA
TTCGGCCATAGGCTCGGTAAAGCTCGACACCGGTGTATCATCTGGGGCCA
TTTACATAACATCAAAGGTACATCATGTCCCCGAAAGCTCGACAGCATTA
GGttacgcctccctcccgcacctcTTGCACCGCCACGGCACTGCATCATC
CTCGCCTCCAGGCTCCCGTCACAGGACACTATCACCTTCGCTCCTCAGTC
ACTGGTCGCGAAGAGCCAGACGTAAAACGAGGCTTCTTCTTGCACTTTAT
ATCATAGGAGCGTATGGTATTCCAGCGTACGTGTTTTGTGTGTGGATTTG
GCACTTATGCATGCAATGGACGAATGTCATCCAAGTGGATGAAAGAGATG
CCGTCTTGATAGAACGGGGAAAGGGCTCCAAAGCTCCTACCCTGGACGAC
GTGCTTCACTCGCTCCCCGAAGTGGCTACAAAGGTATCCAAAACAATGGG
CTGGCGTGATGAAAATGAATGCTAG

Synonyms

Publications