rna4202, rna4202 (mRNA) Nannochloropsis gaditana

Overview
Namerna4202
Unique Namerna4202
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3594
Alignment locationCM002462.1:1110255..1111135 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100045g18.1674.mrna
Orig protein idgnl|cribi|Naga_100045g18.1674
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1110255..1111135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100045g18gene4046Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26482.1cds4192Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4202rna4202-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4202 ID=rna4202|Name=rna4202|organism=Nannochloropsis gaditana|type=mRNA|length=3594bp
ACACACACTGAAGGCGGGCCCTTCGATTTCTAATGTTTAACCCCTTTTGT
GCCAAATGTAGGCCAAGCCCCACAATGCGTGCGATAAAAAGGAAGTTAAA
AAATATGTTTGTGCATTAAAAAATAGGCAAGCATGCAGCACGTCCCGATA
TTGCATAGATCAGTTTGTTGTCCTCGTTGAAAACTCCCTGGCCTCAGGCG
AACGACCTCCCCCTGGCATGGCTCAATGGGCGCCTTGACATGTGTCCGTT
TTGCACTCGTGATAATGACTCATCCCTTAATTGCCTCCGTCTTTCCGCAG
ACAGTCTTTGCGCTTTGGGTACACTCTTGGCTGACGAGATCAGGCATTGC
TGGGGCACATGCCACCGGTGGCTGCGATTTCACTTCCTGAAAGTGGCCTT
CCTCCATCACCCTCCATCTCAACAAAGCTCGAGGTCTCAGATAGCATGAG
CTACACCGCTGCAGAGAACCTCAATCAGGCATCCAATTCAGACTCCTCAT
CATCGACTGAAACAATTTATCACACGTTTCGGGGGAAGATAGCCTCGTTT
TTGTATATGGCTCCCCCATTGGCGGCTTCTTCCACCGCAGAGGAACGCCT
TCCCCTACGCAGCACGACTAGCTCACAAGACAGAAATAAACGGACTCTGC
AAGTGACACCACAATCATCTTCTTCAGAATCCTCCCCCATCCTGACCTAC
ACCACGAACGCGCCTCCCACGCGCCCGCCCACGCGGCTCCTACCCTCCCT
CCCTGAGGCCTACCACTCCGTCCCTGTTCCTCGCGCCCGTCCTGGGGAAG
TCTCGTGGCTTTCCCGGTGTCGGACGCTTTTGGCCTACGTGGGCCCGGGA
TACATGGTGGCTGTAGGTTACATGGATCCTGGAAACTGGGCGACAGATAT
AGCGGGAGGAGCCATCTACGACTATGCTCTCCTCTCCGTCGTCCTCCTCT
CCTCCCTCCTGGCTGTCTTCCTCCAGGTGTTGACAGTAAAACTGGGGGTC
GCCACCAAACGGGACCTTGCCCAGATGTGTGCCGAGGCCTACTCCCCCCG
CTTTGCGGTCTTCCTCTGGATTACGGCCGAAATCGCCATTGCAGCCTGCG
ACTTGGCCGAAGTCATTGGCTCCGCTATTGCTTTGCAACTTCTCTTTGGG
CTCCCGCTAGTATGGGGATGCTGTTTGACAGCTCTAGACGTTTTGATTGT
CCTCTCATTCTTCGATAAGCCCGGGCGCCGGTTTCGTGGCCTCGAGCTGG
CTGTGATGGGTCTCATCGCCGTCATTTTTGTTTGCTTCGCCGCGGAAATA
GTCCTATCTCGGCCTTCTTTCTCAGGGGTAATGAAAGGTTTCTTTGTTCC
CGACCTCTATGCCCTCGCGACGCAGGCGCCTCGCCTATACATCGCCATGG
GTATTTTAGGCGCCACAGTCATGCCTCACAACCTATACCTCCATTCGTCG
CTGGTACAAACGCGGGACTACGGAGAAAGCGTGGAGGACAAGACTGAGGC
CATATTCTATTCATCCCTGGACACGATCATCGCCCTCTCCTTGGCCCTCT
TCGTCAACGCGGCCATCCTTATCGTCGCAGCTGCCGCTTTTTTTGATCCC
AGTGGTTCCACTCAGGATGCTCCTTCGGTATCGGAAGCCTACGATTTACT
GGCACCTGTGCTAGGCAACAAAGCTGCGTCCATTCTCTTTGGAGTTGCCC
TCCTCGCGTCGGGTCAGAACAGTACATTGACCGGCACATTGGCAGGGCAA
ATTGTAATGGAGGGCTTCGTGCAGGTACGCTTGAAACCCTGGCTTCGTCG
CCTGATCACACGCCTGGTGGTGATCGTCCCCGCTGTGTTCACTGTGGTGT
TGGCAGGCGACAAAGGAGTAGACTTCCTTCTCGTCCTCTCGCAGGTTATA
CTGTCGTTCCAACTCTCCTTCGCAGTTTTCCCGCTCGTTATGTTCACTAG
CGATGTCTCCGTCATGGGTACAGAGTTTGTAAATTCCCCATCGACTTCCT
TTCTGGCCTGGGTCTCTGCCATTCTTATAGCCGCTTTGAACATATGGTTG
TTGGTCATGACAGTTGGACAAGGTAGTATCCCTGCTTAATTGGCCAACGG
CGAGAAAGTGTATTTGCAGTAATCTAGTCATGATATTCATGATCGTGTGA
AGCGAGAACCAGTAGTGGTAGCTGTTCTCTTAATTAGAGCTCATTTGGTC
TTTCGGTGGCTATCGACTAAAAGGGCAAAGTAAAATAGTTTGGAAATCAC
TGTTGAACGTGCCAATGTGCATTCAAAGGCATGTTAAGATACCTCGAAAA
TCGAAAGAAAAGAAGCAAGAGGAAAGTTGGGATCAGGAAGTGACCTGTAT
GTGTTTCACATCCTATAAAGTATATACCCCAAGGAGTCTGCTAGCGCCAG
ACATCGAGCACAAATTAGTTAAGAAACCATATAATGTTATCTTTTCTCCT
CTTAAAGAGTAAGAAAAGTTCCTTGGAAGAGCTGGAGAGGGCCATAGACT
TAATTATTGAAGATAGAGAAGGCAAACATAGAATAATATTTCAAGACAGC
TGGATCTAGAATGTGAAAATTGGAGAAAGTGAGAGTGTTTTTCAGTAGAA
AATGCTTTGATACAGGGTCATAAGAATTCGTTCCTGCATGATCCAAATCA
AGCAATGGTTTTAATGTTGACGCATACGCAGGCAAGCTGATCAATGTTCT
TCTTTTCAATTGAAATCCGCTCGATAAATGGCATGGGCTATGTCCTAGCC
ATCGCAAGTCTGCCTTTCTCCTCGACCTTTTATCCACAGAACTGGTGGAA
TAGCAGACCTTTTCGATTCGTTCGTTGCTAAGTAGAAGGCGACTACCGTT
AGAAGTCTAATGCACAAAACGTTTTCTACAAAATCATTCCTTTCAGATGT
TCCAGTCTAACGTGTTGAGGGGGGACCCACAGGCTTCGGCGGGGCTGGTT
TGCCTTGGTCGATCATCCGCCCGGCAGGTGTGCTATCACCACGCGCCAGG
CTCTCCTCTGCTCCAACATCTACAGGCGGCAAGGGCTCAGGCGTGGATGG
ATCTCCGGCTGTGAACAGAGCATCAGATCCGCGTTCTGAGGGGGGACCCA
CAGGCTTCGGCGGGGCTGGTTTGCCTTGGTCGATCATCCGCCCGGCAGGT
GTGCTATCACCACGCACCAGGCTCTCCTCTGCTCCAACATCTACAGGCGG
CAAGGGCTCAGGCGTGGATGGATCTCCGGCTGTGAACAGAGCATCAGATC
CGCGTTCTGAGGGGGGACCCACAGGCTTCGGCGGGGCTGGTTTGTCATTA
TCAATCATTTGTTCGCTGGATGCGTCTGAACGTGGGTCAGGAGCCTTGAT
TTCGCCATGATCATACATAAGCCCTCGGAAAACAGAGGATAAGGTATCTG
ACGTCGCTCGAAGGTGTCCATGTGAGCGTAAAATATCAACGCCCTGTACT
GGCATTGGTCCAGTGGCAATGAAGCAGCAAATAGTCCATGCCAGGATAGC
AATAGAAGCGCTCGTTTTCATTATAATGCTTTGATCACTCAAATCTTAAA
CCTGTCTTTAAGTTGTTGATCATGACAGAAACAAAAGAATAAAA
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protein sequence of rna4202

>rna4202-protein ID=rna4202-protein|Name=rna4202|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MKTSASIAILAWTICCFIATGPMPVQGVDILRSHGHLRATSDTLSSVFRG
LMYDHGEIKAPDPRSDASSEQMIDNDKPAPPKPVGPPSERGSDALFTAGD
PSTPEPLPPVDVGAEESLVRGDSTPAGRMIDQGKPAPPKPVGPPSERGSD
ALFTAGDPSTPEPLPPVDVGAEESLARGDSTPAGRMIDQGKPAPPKPVGP
PSTR
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mRNA from alignment at CM002462.1:1110255..1111135-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4202 ID=rna4202|Name=rna4202|organism=Nannochloropsis gaditana|type=mRNA|length=881bp|location=Sequence derived from alignment at CM002462.1:1110255..1111135- (Nannochloropsis gaditana)
AGACAGGTTTAAGATTTGAGTGATCAAAGCATTATAATGAAAACGAGCGC
TTCTATTGCTATCCTGGCATGGACTATTTGCTGCTTCATTGCCACTGGAC
CAATGCCAGTACAGGGCGTTGATATTTTACGCTCACATGGACACCTTCGA
GCGACGTCAGATACCTTATCCTCTGTTTTCCGAGGGCTTATGTATGATCA
TGGCGAAATCAAGGCTCCTGACCCACGTTCAGACGCATCCAGCGAACAAA
TGATTGATAATGACAAACCAGCCCCGCCGAAGCCTGTGGGTCCCCCCTCA
GAACGCGGATCTGATGCTCTGTTCACAGCCGGAGATCCATCCACGCCTGA
GCCCTTGCCGCCTGTAGATGTTGGAGCAGAGGAGAGCCTGGTGCGTGGTG
ATAGCACACCTGCCGGGCGGATGATCGACCAAGGCAAACCAGCCCCGCCG
AAGCCTGTGGGTCCCCCCTCAGAACGCGGATCTGATGCTCTGTTCACAGC
CGGAGATCCATCCACGCCTGAGCCCTTGCCGCCTGTAGATGTTGGAGCAG
AGGAGAGCCTGGCGCGTGGTGATAGCACACCTGCCGGGCGGATGATCGAC
CAAGGCAAACCAGCCCCGCCGAAGCCTGTGGGTCCCCCCTCAACACGTTA
GACTGGAACATCTGAAAGGAATGATTTTGTAGAAAACGTTTTGTGCATTA
GACTTCTAACGGTAGTCGCCTTCTACTTAGCAACGAACGAATCGAAAAGG
TCTGCTATTCCACCAGTTCTGTGGATAAAAGGTCGAGGAGAAAGGCAGAC
TTGCGATGGCTAGGACATAGCCCATGCCATTTATCGAGCGGATTTCAATT
GAAAAGAAGAACATTGATCAGCTTGCCTGCG
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Coding sequence (CDS) from alignment at CM002462.1:1110255..1111135-

>rna4202 ID=rna4202|Name=rna4202|organism=Nannochloropsis gaditana|type=CDS|length=615bp|location=Sequence derived from alignment at CM002462.1:1110255..1111135- (Nannochloropsis gaditana)
ATGAAAACGAGCGCTTCTATTGCTATCCTGGCATGGACTATTTGCTGCTT
CATTGCCACTGGACCAATGCCAGTACAGGGCGTTGATATTTTACGCTCAC
ATGGACACCTTCGAGCGACGTCAGATACCTTATCCTCTGTTTTCCGAGGG
CTTATGTATGATCATGGCGAAATCAAGGCTCCTGACCCACGTTCAGACGC
ATCCAGCGAACAAATGATTGATAATGACAAACCAGCCCCGCCGAAGCCTG
TGGGTCCCCCCTCAGAACGCGGATCTGATGCTCTGTTCACAGCCGGAGAT
CCATCCACGCCTGAGCCCTTGCCGCCTGTAGATGTTGGAGCAGAGGAGAG
CCTGGTGCGTGGTGATAGCACACCTGCCGGGCGGATGATCGACCAAGGCA
AACCAGCCCCGCCGAAGCCTGTGGGTCCCCCCTCAGAACGCGGATCTGAT
GCTCTGTTCACAGCCGGAGATCCATCCACGCCTGAGCCCTTGCCGCCTGT
AGATGTTGGAGCAGAGGAGAGCCTGGCGCGTGGTGATAGCACACCTGCCG
GGCGGATGATCGACCAAGGCAAACCAGCCCCGCCGAAGCCTGTGGGTCCC
CCCTCAACACGTTAG
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Synonyms
Publications