rna418, rna418 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna418
Unique Name	rna418
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2481
Alignment location	CM002455.1:1039537..1041315 -

Link to JBrowse

Properties


Property Name	Value
Product	glutathione s-transferase
Orig transcript id	gnl\|cribi\|Naga_100003g64.1814.mrna
Orig protein id	gnl\|cribi\|Naga_100003g64.1814
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1039537..1041315 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g64	gene402	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30297.1	cds418	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna418	rna418-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1039537..1041315-
coding sequence from alignment at CM002455.1:1039537..1041315-

mRNA sequence

>rna418 ID=rna418|Name=rna418|organism=Nannochloropsis gaditana|type=mRNA|length=2481bp
ATGACAACGATTTGCCGCTCGTGTCGACCTTTGTTCTCAGCTTTGTTTTT
TCTTTGTTACTGCAGCACACCGCATCGGTATCTACGGTTTCGAGAGGCAC
GAGGGAAAGTATCAAAGATGCTGGCATCTCGTTCTTCCCTTGGGCGCCTG
CGTCCCGCAATGAGCACGGCATTGCGGGGCAGCATGTCTTTATTCCAAGC
CCGCACCCTTGCAGGCACCCCTTTGTCCGTCCTGGACCCCAAGGGCAGTC
CCACGATCGAGGAGACGTACGCCAAGATGGCTAGCCGCCTCCAGGTCGTG
CGCAAGACGCTGAACCGGCCCCTGACGCTGGCAGAGAAGATCCTTTTTGC
CCACCTGGACGATCCCACGACTAAAGTTACCCGTGGAGAGACGTACTTGA
AGCTGCGCCCGGACCGCGTGGCGATGCAGGACGCGACGGCGCAGATGGCG
GTCCTTCAATTCATCTCCTCGGGCCTGCCCAAGACGGCCGTGCCCAGCAC
CATCCACTGCGACCATCTGATCGCCGCAGAGAACGGCTCGGCCAAGGATC
TTCATGCCGCCCAGGTGACGAACAAGGAAGTTTACGATTTTTTGGCGTCG
GCGGGCGCCAAATTTGGGATCGGGTTCTGGAAACCGGGCTCGGGGATTAT
CCATCAAATCATCTTGGAGAACTACGCCTTCCCCGGCGGCTTGATCATCG
GCACGGACTCACACACGCCGAATGCGGGGGGTCTGGGCCTGCTGGCGATC
GGGGTGGGCGGGGCGGATGCCGTGGACGTGATGGCGGGCATGCCCTGGGA
GCTCAAGGCGCCCAAGGTGATCGGCGTGAAGCTGACGGGGGAGATGTCCG
GGTGGACGAGCCCCAAGGACGTGATCCTCAAACTCGCCGGCATCCTGACC
GTGAAGGGCGGCACGGGCGCCATTGTCGAGTACTTCGGTCCGGGCGTGGA
GACCGTCTCGGCGACGGGGCTGGCTACGATCGCCAACATGGGCGCCGAGA
TCGGCGCAACCACCTCCACATTCCCTTACACACAGAAGATGTCGGACTAC
CTTCGAGCCACCAAGCGAGAGGGCCTGGCCGATGCTGCGGACAAATTTAA
GGCGAACCTGAGTGCGGACGAGGGCTGCGAGTACGACCAGCTCATCGAGA
TCAACCTGTCGGACCTCAAGCCCCACTTGAACGGACCTTTTACCCCCGAC
TGGGCCCATGTGGTCGGCCCCGAGTTCAAAAAGACCCTGGAGGAGAAGAA
GTGGCCGGAGGAATTGTCGGCGGGGCTGATCGGTTCCTGCACGAACTCCT
CCTACGAGGACATGACGCGCTCGGCCGCACTGACCAAACAAGCGCTGGCG
GCGGGCTTGAAGTTCAAAGTTCCTTTCCACGTCACCCCCGGTTCCGAGCA
AGTTCGCGCCACGATCGACCGCGATGGCTTGATTGGCACCTTCGAGGAGG
CGGGCGCCTCCGTGCTCGCGAATGCCTGCGGCCCCTGCATCGGACAGTGG
CACCGCAAGGACGTGGAGAAGGGCAGCAAGAACAGCATCATCACCTCCTA
CAACCGCAATTTCGCCAAGCGCAACGACGGCAACCCGGGCACCCACGCTT
TCGTCTCCTCCCCGGAACTAGTGACGGCCACGGCCTTCGCAGGCACCATT
ACTTTCGATCCGACACGGGACACGATCAAGACACCGGACGGAAAAGACTT
CAAGTTTGCGCCGCCGGTTGGGATGGAGCTGCCCCCCAGGGGCTTTGACC
CGGGAGAGGACACCTTCCAGGCGCCCCCTGAGAACAGCTCGGGCTTGGAG
GTGTCCGTGGATCCTGCCTCGCAGCGTCTGGCCCTGCTCGAGGCCTTCGA
CCGATGGAATGGGAAGGACCTGACCGACATGCCCGTGCTGATCAAAGCCA
AGGGGAAGTGCACCACTGACCACATCAGTATGGCGGGCCCCTGGTTGAAG
TTCCGCGGGCACTTGGACAATATCTCCAACAACCTGCTGATCGGCGCCGA
GAACGCGGAGACGGGGAAGATCAATGAGGTGACGAACATCATCACGGGGG
AGAAGGGGAAAGTCCCCGAGGTCGCGCGACAGTACAAGGCAAAGGGGGTG
AGCTGGGTGGTGGTGGGCGACGAGAACTACGGGGAAGGCTCGTCGCGTGA
GCACGCCGCCTTGGAGCCCCGGCATTTGGGGGGACGCGCCATCATTGTCA
AGAGCTTTGCGCGCATCCACGAAACTAATTTGAAGAAGCAAGGCATGCTG
CCCCTGACTTTCGCGGACCCGAAGGACTACGATCGAATCTCAGGCCACGA
CCGCCTCTCGATCCTGGGACTGAGCGATCTGCAGCCTGGCAAGCCGCTGA
AGGTGTTGGTGAAGCCTGCGGGAGGGAAAGCGCCGTTCGAGATTACCGTC
AACCATACCTTCAACGAGGAGCAAATTGACTGGTTTAAGTACGGCTCGGC
TTTGAACCGGATGAAGGCCATGGCGAAGTGA

protein sequence of rna418

>rna418-protein ID=rna418-protein|Name=rna418|organism=Nannochloropsis gaditana|type=polypeptide|length=521bp
MQMRMQATLLPTTFILASISTTVVGFFLSPSPTLVSPGRTTSKAWRNPLK
PSLTRYSSLGGMFTQMLSGMVKGSAPPPAGMSDFKDPAPSWADLKASLSQ
RQTPEERALPDLRAAGRGPPSSKAEIRLFDAPDGYEPRVTLYRDTAAWCP
YCEKVWMYLEEKRIPYRVKKVPMRCYGQKPAWFSRLSATGLLPVMELDGD
VVIESDVIIQTLEDKFPEAVPLLPLASDPDAAAVGPLLRLERELFSGWLR
WLTGSTSTNERSKMIFEGVLGRVEAALSERGGPYFLGSGFSLIDCIYVPF
MERIAGSLCYYKGFVIRNNPQYPAIERWFQGMESRESFANIKSDWYTHAM
DMPPQVGSCSSIPEAAPYAAELSGKDGSWTLPVRPDGVEPFRRTRDVGSC
QREAAAQLLSNPEAVVAFAARALGEPGVPPVMAELADPNAKANEAYIPLL
DAALRAVTHSLLEGPEAVPPPTGFVAPAEVARGLDYLRARVGVPRDMSYE
AARYFRAHLGWYAGLLRASVQ

mRNA from alignment at CM002455.1:1039537..1041315-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna418 ID=rna418|Name=rna418|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp|location=Sequence derived from alignment at CM002455.1:1039537..1041315- (Nannochloropsis gaditana)
CACTGCGCAGCATAACAAAAGCGTCTCACCTTTCCATCAAACACTCTTAT
GTAGGCTTGGCTATGCAAATGCGGATGCAAGCCACCCTTTTGCCTACGAC
GTTCATTCTTGCCTCCATCAGCACCACCGTTGTCGGCTTCTTTCTGTCTC
CGTCCCCCACTTTGGTATCTCCAGGCAGGACCACGTCGAAGGCGTGGAGG
AACCCTTTGAAGCCCTCTTTGACACGTTACTCGTCGCTGGGTGGCATGTT
CACACAGATGCTGAGTGGTATGGTCAAAGGTTCAGCCCCTCCTCCCGCAG
GCATGAGCGATTTCAAAGACCCTGCACCAAGTTGGGCGGACTTGAAAGCG
TCCCTCTCCCAGCGGCAAACGCCAGAGGAGCGGGCCCTGCCCGACTTGCG
CGCAGCCGGCCGCGGACCTCCTTCGAGCAAGGCCGAAATACGCCTGTTTG
ATGCACCCGATGGGTATGAGCCTCGTGTCACGTTGTACCGCGACACTGCG
GCCTGGTGCCCTTACTGTGAAAAGGTGTGGATGTACTTGGAGGAAAAACG
CATTCCATACCGGGTCAAGAAAGTTCCCATGCGATGCTATGGGCAGAAGC
CTGCCTGGTTTTCACGGCTCTCTGCCACCGGGCTTCTGCCTGTGATGGAG
CTTGACGGGGATGTCGTCATCGAGTCCGACGTGATCATCCAGACGCTCGA
GGATAAATTTCCCGAGGCCGTCCCCCTCCTCCCCCTGGCCTCGGATCCCG
ACGCGGCGGCCGTGGGACCCTTGTTGCGTTTGGAGCGAGAGCTTTTCAGC
GGCTGGTTGCGTTGGCTGACGGGAAGCACTAGTACGAACGAACGCAGCAA
GATGATCTTTGAGGGAGTCCTGGGTCGCGTGGAAGCTGCCCTTAGCGAGC
GGGGTGGTCCTTATTTCTTAGGGAGCGGGTTCTCCTTGATCGACTGCATT
TATGTTCCCTTCATGGAACGGATCGCGGGCTCGCTCTGCTATTACAAGGG
CTTCGTGATTCGCAACAATCCACAGTACCCGGCGATAGAGCGGTGGTTTC
AAGGCATGGAGTCGAGGGAGTCCTTCGCCAACATCAAGAGCGATTGGTAT
ACCCACGCCATGGACATGCCCCCGCAGGTCGGATCGTGCTCCAGCATCCC
AGAAGCTGCGCCCTATGCTGCGGAACTGTCGGGGAAGGATGGGTCCTGGA
CTCTGCCGGTGAGACCGGACGGGGTGGAGCCCTTTCGGAGGACGCGAGAC
GTGGGGTCTTGCCAGCGCGAGGCCGCGGCCCAATTGCTTTCGAACCCCGA
GGCCGTGGTCGCCTTCGCTGCCCGAGCACTGGGCGAGCCGGGCGTGCCTC
CTGTCATGGCGGAGCTGGCAGACCCAAACGCGAAGGCCAACGAGGCCTAC
ATACCCCTACTCGACGCGGCCCTGCGAGCGGTGACCCACAGCCTGTTGGA
GGGGCCCGAGGCGGTGCCGCCTCCCACGGGGTTTGTGGCCCCCGCGGAGG
TTGCGCGGGGCTTGGACTACTTGAGGGCCCGGGTGGGGGTGCCGCGCGAC
ATGTCCTACGAGGCTGCTAGGTATTTCCGCGCTCACTTGGGCTGGTATGC
AGGTCTTTTGCGGGCGTCGGTGCAGTGAGGACCTAGAGGGCTAGCTGGAG
TGGCTGAGCGGGTTTGTGAAAGGCTTCCAGGGAAAAGTTCGCTTTGAACA
ATGTGTAACAATCGGGAAAAATCGTTATGTCAAGGACGGCAAGACAAAGA
TGTCAGGAACAGCTCTCACGCCTCCGTCA

Coding sequence (CDS) from alignment at CM002455.1:1039537..1041315-

>rna418 ID=rna418|Name=rna418|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002455.1:1039537..1041315- (Nannochloropsis gaditana)
ATGCAAATGCGGATGCAAGCCACCCTTTTGCCTACGACGTTCATTCTTGC
CTCCATCAGCACCACCGTTGTCGGCTTCTTTCTGTCTCCGTCCCCCACTT
TGGTATCTCCAGGCAGGACCACGTCGAAGGCGTGGAGGAACCCTTTGAAG
CCCTCTTTGACACGTTACTCGTCGCTGGGTGGCATGTTCACACAGATGCT
GAGTGGTATGGTCAAAGGTTCAGCCCCTCCTCCCGCAGGCATGAGCGATT
TCAAAGACCCTGCACCAAGTTGGGCGGACTTGAAAGCGTCCCTCTCCCAG
CGGCAAACGCCAGAGGAGCGGGCCCTGCCCGACTTGCGCGCAGCCGGCCG
CGGACCTCCTTCGAGCAAGGCCGAAATACGCCTGTTTGATGCACCCGATG
GGTATGAGCCTCGTGTCACGTTGTACCGCGACACTGCGGCCTGGTGCCCT
TACTGTGAAAAGGTGTGGATGTACTTGGAGGAAAAACGCATTCCATACCG
GGTCAAGAAAGTTCCCATGCGATGCTATGGGCAGAAGCCTGCCTGGTTTT
CACGGCTCTCTGCCACCGGGCTTCTGCCTGTGATGGAGCTTGACGGGGAT
GTCGTCATCGAGTCCGACGTGATCATCCAGACGCTCGAGGATAAATTTCC
CGAGGCCGTCCCCCTCCTCCCCCTGGCCTCGGATCCCGACGCGGCGGCCG
TGGGACCCTTGTTGCGTTTGGAGCGAGAGCTTTTCAGCGGCTGGTTGCGT
TGGCTGACGGGAAGCACTAGTACGAACGAACGCAGCAAGATGATCTTTGA
GGGAGTCCTGGGTCGCGTGGAAGCTGCCCTTAGCGAGCGGGGTGGTCCTT
ATTTCTTAGGGAGCGGGTTCTCCTTGATCGACTGCATTTATGTTCCCTTC
ATGGAACGGATCGCGGGCTCGCTCTGCTATTACAAGGGCTTCGTGATTCG
CAACAATCCACAGTACCCGGCGATAGAGCGGTGGTTTCAAGGCATGGAGT
CGAGGGAGTCCTTCGCCAACATCAAGAGCGATTGGTATACCCACGCCATG
GACATGCCCCCGCAGGTCGGATCGTGCTCCAGCATCCCAGAAGCTGCGCC
CTATGCTGCGGAACTGTCGGGGAAGGATGGGTCCTGGACTCTGCCGGTGA
GACCGGACGGGGTGGAGCCCTTTCGGAGGACGCGAGACGTGGGGTCTTGC
CAGCGCGAGGCCGCGGCCCAATTGCTTTCGAACCCCGAGGCCGTGGTCGC
CTTCGCTGCCCGAGCACTGGGCGAGCCGGGCGTGCCTCCTGTCATGGCGG
AGCTGGCAGACCCAAACGCGAAGGCCAACGAGGCCTACATACCCCTACTC
GACGCGGCCCTGCGAGCGGTGACCCACAGCCTGTTGGAGGGGCCCGAGGC
GGTGCCGCCTCCCACGGGGTTTGTGGCCCCCGCGGAGGTTGCGCGGGGCT
TGGACTACTTGAGGGCCCGGGTGGGGGTGCCGCGCGACATGTCCTACGAG
GCTGCTAGGTATTTCCGCGCTCACTTGGGCTGGTATGCAGGTCTTTTGCG
GGCGTCGGTGCAGTGA

Synonyms

Publications