rna4178, rna4178 (mRNA) Nannochloropsis gaditana

Overview
Namerna4178
Unique Namerna4178
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length249
Alignment locationCM002462.1:1044381..1045046 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101335g3.6838.mrna
Orig protein idgnl|cribi|Naga_101335g3.6838
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1044381..1045046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101335g3gene4021Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4178rna4178-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26505.1cds4168Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4178 ID=rna4178|Name=rna4178|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGGAGCGGACATGCCCGACGTACGTTGAAACGAGCGGCCGTGTACTCCA
ATATCGACTGTACACGGTATACTATGGGCGAATGTCGGGGATACCCTTCC
CACGAATATCGCGGAATTGCCTTGGACTCGCTTCTTTCGAACGCGGTTTT
GTTAGTCTACTAGTCGTGATGGACTCACGCATTGGGTCGAAGCAGCCCCC
ACGACGGGACAAACTGCAGCTTCAGCAACTGAAATCATCGATGGGATAA
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protein sequence of rna4178

>rna4178-protein ID=rna4178-protein|Name=rna4178|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MISGLLRGTLGEILAPSPPASTQKKRVSEDPAAEKNEPTGQENPSLASRP
QKDEDTTRGTQGSPCHDPTTAPHEPRAASSLSPVQPPPTMGEDLTSKMKS
LTIKGSIQTAAARMPPPLPPGPAALTPPPPESTPPSGSSSIPGPTSRATN
LLSVFSTPSKQTPGPKTGGSAARRRYTISPMLTGTPKALEPALRDRVVQV
GR
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mRNA from alignment at CM002462.1:1044381..1045046+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4178 ID=rna4178|Name=rna4178|organism=Nannochloropsis gaditana|type=mRNA|length=666bp|location=Sequence derived from alignment at CM002462.1:1044381..1045046+ (Nannochloropsis gaditana)
CCGTTCGAACACAAAATGTTCTTGACAGGGGAGGGTCTGGCTGATTGACG
AGAGGTAATATGATATCGGGACTGTTGCGCGGTACTCTGGGTGAAATTTT
GGCTCCGTCACCGCCGGCATCCACCCAAAAGAAGAGGGTATCAGAGGACC
CAGCCGCAGAAAAAAATGAGCCAACGGGGCAAGAAAATCCATCGCTGGCT
TCAAGGCCTCAGAAAGATGAAGACACGACGCGCGGCACGCAGGGCAGTCC
ATGCCACGACCCGACAACTGCTCCACATGAACCTCGTGCTGCATCGTCCC
TCTCACCCGTCCAGCCCCCGCCGACCATGGGGGAGGACCTAACGAGCAAA
ATGAAGTCCCTCACCATAAAGGGCAGCATCCAGACCGCTGCCGCCAGGAt
gccgccccctcttcccccaggTCCGGCGGCGTTgactccgcctccgccag
agagcacccctccctccggcagCTCCAGCATCCCGGGCCCAACCAGCCGA
GccaccaacctcctctccgtgTTCTCGACCCCGTCGAAGCAGACGCCGGG
GCCCAAAACAGGCGGCTCTGCGGCCCGCCGACGGTACACAATCAGCCCCA
TGCTCACGGGGACCCCCAAGGCGCTCGAGCCCGCCCTGAGAGACAGGGTG
gtgcaggtagggaggg
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Coding sequence (CDS) from alignment at CM002462.1:1044381..1045046+

>rna4178 ID=rna4178|Name=rna4178|organism=Nannochloropsis gaditana|type=CDS|length=607bp|location=Sequence derived from alignment at CM002462.1:1044381..1045046+ (Nannochloropsis gaditana)
ATGATATCGGGACTGTTGCGCGGTACTCTGGGTGAAATTTTGGCTCCGTC
ACCGCCGGCATCCACCCAAAAGAAGAGGGTATCAGAGGACCCAGCCGCAG
AAAAAAATGAGCCAACGGGGCAAGAAAATCCATCGCTGGCTTCAAGGCCT
CAGAAAGATGAAGACACGACGCGCGGCACGCAGGGCAGTCCATGCCACGA
CCCGACAACTGCTCCACATGAACCTCGTGCTGCATCGTCCCTCTCACCCG
TCCAGCCCCCGCCGACCATGGGGGAGGACCTAACGAGCAAAATGAAGTCC
CTCACCATAAAGGGCAGCATCCAGACCGCTGCCGCCAGGAtgccgccccc
tcttcccccaggTCCGGCGGCGTTgactccgcctccgccagagagcaccc
ctccctccggcagCTCCAGCATCCCGGGCCCAACCAGCCGAGccaccaac
ctcctctccgtgTTCTCGACCCCGTCGAAGCAGACGCCGGGGCCCAAAAC
AGGCGGCTCTGCGGCCCGCCGACGGTACACAATCAGCCCCATGCTCACGG
GGACCCCCAAGGCGCTCGAGCCCGCCCTGAGAGACAGGGTGgtgcaggta
gggaggg
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Synonyms
Publications