rna4177, rna4177 (mRNA) Nannochloropsis gaditana

Overview
Namerna4177
Unique Namerna4177
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length872
Alignment locationCM002462.1:1043418..1043907 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101335g2.6840.mrna
Orig protein idgnl|cribi|Naga_101335g2.6840
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1043418..1043907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101335g2gene4020Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4177rna4177-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26507.1cds4167Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4177 ID=rna4177|Name=rna4177|organism=Nannochloropsis gaditana|type=mRNA|length=872bp
GAGAATCTTTTCTTTATCCCGGCTTCTTTCCTGTCCATCACGCTCCTTGC
CACCTGGCATGCCTTTGCCCTCCCTCAGGACCGACTCGGGCGCCCCCAAC
AAGAACAACGTGGGCGCCTCCGGGTATGCGTGGAACAGCATGAGCGGCGA
CGGCCTTCTCCAGACCTTCACCAAGGCTGGCTTCGGGGCCAGGGAGGCTG
TTCTCCTGTACGGCGCGATGGGGGCCGTGTATTTGGCGACAAAAGACGCG
GGAAAGACCGCGGGCGAGGTGGACGCCGACATCGACGACGACGGTGAAAT
CGAAGCCTTCATCCCCAACACCTTTGGGAAGCAAAGCGATATTTACGGTG
CTCAGCTCGGAAATAGGAAGTTTGATGCCAGTTATTTGGCCCAGATTGCC
AAGGGGCAGACGGTCGGTTTGGGCTCTGTGGACAAGGCCTTGGCGGACCC
GCAACTCAAGACCTTTGTGGGGAAATATGCCGGGAATAACAACGCCTTTC
TGAAGGACTTGAACGAATGCTACCTGAAACTGACAACGTTGGGGTACCAA
GGGACCAAGAGGAACGATTAGGGTAAGAACTGGACTAGTCGATGGCAGGC
GGGAGGGCCCGCACCGAGTGCAAGGGCCTGTGTGATGCGGGCCGGTCAGA
GAGAGGCTCTGGCGCCCCGAAAAGTGCTTTGTTTTCACATTGTAGGACAT
CCCTCATGGAGGGGAGAAATGAAAGAAAAAAGTCAGAGCTAAGTGGAAAC
GGGTCTAAAGCGTAGGCCGTGAATTTGGTTTTTAAGATAGAAGTCGCCGT
CGACGGTAGACTGCCAGCTGCCTTCGTTGCTCGATCCCTGTCAAAGGATC
TTAAAAGCCCGGAAAGAAAAGG
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protein sequence of rna4177

>rna4177-protein ID=rna4177-protein|Name=rna4177|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MERTCPTYVETSGRVLQYRLYTVYYGRMSGIPFPRISRNCLGLASFERGF
VSLLVVMDSRIGSKQPPRRDKLQLQQLKSSMG
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mRNA from alignment at CM002462.1:1043418..1043907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4177 ID=rna4177|Name=rna4177|organism=Nannochloropsis gaditana|type=mRNA|length=490bp|location=Sequence derived from alignment at CM002462.1:1043418..1043907- (Nannochloropsis gaditana)
ATGGAGCGGACATGCCCGACGTACGTTGAAACGAGCGGCCGTGTACTCCA
ATATCGACTGTACACGGTATACTATGGGCGAATGTGTTGTTGAAAGGGTG
ATGATATCCAATCAACCCTCCGCGGATTACTGCATGGAGTCGAACCCCTA
CACACCGTAGCTACTTCTGGTACTAGGAGTATTACAGTGATTTCCTTTCC
CCGCCGCCGCTTCGGTTCACGATTCTTGTCTTAAATCAAAATTTGGACCA
ACTCAAGTCATGCCAATGCCAAATCATCCGGAGCCAGACGCGGTAAAGAC
GACATGAATACAACAACGCCCGACAGCGGGGATACCCTTCCCACGAATAT
CGCGGAATTGCCTTGGACTCGCTTCTTTCGAACGCGGTTTTGTTAGTCTA
CTAGTCGTGATGGACTCACGCATTGGGTCGAAGCAGCCCCCACGACGGGA
CAAACTGCAGCTTCAGCAACTGAAATCATCGATGGGATAA
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Coding sequence (CDS) from alignment at CM002462.1:1043418..1043907-

>rna4177 ID=rna4177|Name=rna4177|organism=Nannochloropsis gaditana|type=CDS|length=498bp|location=Sequence derived from alignment at CM002462.1:1043418..1043907- (Nannochloropsis gaditana)
CGGGGATACCCTTCCCACGAATATCGCGGAATTGCCTTGGACTCGCTTCT
TTCGAACGCGGTTTTGTTAGTCTACTAGTCGTGATGGACTCACGCATTGG
GTCGAAGCAGCCCCCACGACGGGACAAACTGCAGCTTCAGCAACTGAAAT
CATCGATGGGATAAATGGAGCGGACATGCCCGACGTACGTTGAAACGAGC
GGCCGTGTACTCCAATATCGACTGTACACGGTATACTATGGGCGAATGTC
GGGGATACCCTTCCCACGAATATCGCGGAATTGCCTTGGACTCGCTTCTT
TCGAACGCGGTTTTGTTAGTCTACTAGTCGTGATGGACTCACGCATTGGG
TCGAAGCAGCCCCCACGACGGGACAAACTGCAGCTTCAGCAACTGAAATC
ATCGATGGGATAAATGGAGCGGACATGCCCGACGTACGTTGAAACGAGCG
GCCGTGTACTCCAATATCGACTGTACACGGTATACTATGGGCGAATGT
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Synonyms
Publications