rna4173, rna4173 (mRNA) Nannochloropsis gaditana

Overview
Namerna4173
Unique Namerna4173
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2180
Alignment locationCM002462.1:1039160..1039574 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101290g2.10522.mrna
Orig protein idgnl|cribi|Naga_101290g2.10522
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1039160..1039574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101290g2gene4016Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26510.1cds4163Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4173rna4173-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4173 ID=rna4173|Name=rna4173|organism=Nannochloropsis gaditana|type=mRNA|length=2180bp
TTGCCTCCAGATCCATCAAAGCTGGAGTCCCTGGGCGTCGCTGACGTCCC
GACTCTACCGGGATGCCCGCGTCCTGGAGGTGGAGTGGGAGCTGGGGCCC
GTCCCTGTCGACGACGGCGTGGGCAAGGAGGTGGTTCTGCGGCTCGGATC
GGACCTGCGGAGCGAAGGCACCCTGTGGACCGACGCCAACGGCCGGGAAT
TCCAAGAGAGAAAGCTGAACCATCGCGCCACGTGGAACGTCTCGCTCGAC
GAGCCGGTCGCGGGAAATTACTACCCAGCCACCATTGCCGCTTACCTGGA
GGACGGAGAGGGAGGCGGGAAGGAGGGCGGGAAGGAAGGAAAGGCGCTTC
GTCGGCAATTATCGGTGGTTTTGGACCGCTCCGAGGTACGTGGCTCGGGG
AGAAAGGGAACGGCCCATGTTCCCTGCGGCAGCCGTGCGCGGGGATTGAG
ATGGGCCGTCAGAAGGTCTTTATGCACAAGGGCTTGTGTGATAGTCAGGC
GGGGAGGGTCATTCGTCCTCCTTGCCTCGGGTGGCGCTCGACGCGGCCGG
CAAATGATTCTTTTAGGCGTGGGTGTCGCCGTCCTTGCCCAGCGATCATC
ATTCCCCTGCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGG
AGTCGCCTCCCTGGCCTCGGGCCAGCTCGACCTCCTCTTGCAACGGCGCC
TTCTCTTCGACGACCGGCGAGGCGTCAACGAGCCGTTAAATGAAACGGTC
GGGGGCATCGAGCACGGGGGAGACTGGGCCCGACGGGGGGAGGGTGTCCG
GGTGAGAGGGAAGCACACGTTGATGCTCGGAGCGGCAGGGAGGGAGGGAA
TGAGGGAGCTGCGCGTGCAGATGGACGAGGCTTTCTTTCCAGCCTCCCTC
TTCTTCTCCACGCAGGCCGACCTCCTGGCCTCGCCCTCCCTCGCCGCCTC
CCCCTCCCCCTCCCCCTCTGCCCCTCCTTCCCGTCTCTCCTTTTTGCCCA
GCGAGCTCCCTCCCTCCCTTGCCCTCCTCACCCTGCAATACATCCACCCA
CGGGAGCGATGGACCACTCGCACTGACAGCCGCGAGGGAGGGGAGGAGGG
GGGGGGGGAGGACGGCTGTGCTCCTCGGTTCCTCCTCCGCCTTGCCCACC
AGTTCGCTGTCGATGAGGATCCCGAGGAGCTCTCTCAACCTGTGACAGTG
GACTTGGCCAGCCTCTTCCCACGGTATGCACTCCTTTCCTCCACGGAGCT
CACCCTCTCGGCGGGGCAGCCCAAGAGCGAACTGCAACGTCTGAGCTGGA
AGACGACCGAGGGCGCTTTCATGGGAGGGCGGGAGGGAGGGCATGGGGGA
GGGCAGGTGGTGACGTTGGGCCCGATGGAGATCCGCACTTTCGAGGTGGT
ACTGGGGATGAAAGTGGAAGGGAAGAAGGAGGTAGGGGGGCAGGGAGGGG
GGGAGGGAAGGAAGGAGGGAGGGAGGGGACGATGGCGGGCAGGACCTGCG
GGTCTTTTGGCGACGATGTAGGCAGGATTCTAGAAGGTTCTGGGGAAGGG
AGGAGGCCCAGGCATGACAAGGGGGCCACGAGGACGGGCTCCTTCGTGTG
TTCAAGGGGAAAGACGGAAGAAAGGGAGGAAGGGGGAGGGTGTGGTGCCG
GGGTGGTGCCGTAGAAGACTCTGCCCGGTGCATGGGGAGGAGGCAGGGGC
AGGGAGAGGGCGAGGGGGCCGTCACCCGTGACAGCGCGGAAGACTGGCAG
CGGAAAGGGTTCAGATGGCACGGATGGTGAAGCTCGGAAATGGCTGGTAT
GAATGGGAAGTGTGGGGGGGCGGGGGGCGGGCAAAGACAAGGACTTGCTT
TGTGCTCGGGCGCATGCTCAAGAGGTGGTTGGAGGGGCACGGTGCCGTGC
CAAGAAAGATCGATACTTTCGGACTGAGAGAGACCTTTCCGTATGACCGA
AAATGTGGAGAGAGCCCGGGCTCCGAGGGTACCGTGGTAGAAAGAAAGGA
GGCTAGGGTTGGACTGGATGATGCTGTCGCCATGCCGGAGGTGGTAGGGC
GCATCCCCCCTCCCCCGGCACTTGGGTTGCTCTTTGGCTTGAGCGTTATC
GTGTCAATCTCCTTTCTGCCCCATGTGAAGCGTGTCCGTGTTTTCTTTTA
CATGCAAACTGTGTACAATCTATTCGCTCC
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protein sequence of rna4173

>rna4173-protein ID=rna4173-protein|Name=rna4173|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
LTCTPGIIPSTNPPSSSRALPCFPSILLTTPSLPSPPMARRRLGLDIRRL
ASGGGMGRLLSLFGAKSTAAVRRRDREGERGGRRAGGGGGEGRGVCTGAL
AKGGRAGLGGEKGRPAWSE
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mRNA from alignment at CM002462.1:1039160..1039574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4173 ID=rna4173|Name=rna4173|organism=Nannochloropsis gaditana|type=mRNA|length=415bp|location=Sequence derived from alignment at CM002462.1:1039160..1039574- (Nannochloropsis gaditana)
CTAACGTGCACCCCGGGCATTATCCCTTCGACTAATCCACCTTCCTCTTC
TCGCGCCCTCCCCTGCTTCCCTTCCATCCTCCTCACCACGCCCTCCCTTC
CCTCTCCTCCCATGGCCCGCAGACGTCTTGGTCTGGATATTCGGCGCCTG
GCTTCCGGTGGCGGCATGGGCCGCCTCCTCTCTCTATTTGGCGCGAAAAG
CACGGCGGCCGTACGGAGGCGGGACAGGGAGGGAGAGAGGGGGGGAAGGA
GGGCTGGGGGAGGCGGTGGTGAGGGAAGGGGGGTATGCACAGGCGCTCTT
GCGAAGGGAGGGAGAGCGGGTCTAGGGGGGGAAAAGGGGAGACCAGCCTG
GAGCGAATAGATTGTACACAGTTTGCATGTAAAAGAAAACACGGACACGC
TTCACATGGGGCAGA
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Coding sequence (CDS) from alignment at CM002462.1:1039160..1039574-

>rna4173 ID=rna4173|Name=rna4173|organism=Nannochloropsis gaditana|type=CDS|length=360bp|location=Sequence derived from alignment at CM002462.1:1039160..1039574- (Nannochloropsis gaditana)
CTAACGTGCACCCCGGGCATTATCCCTTCGACTAATCCACCTTCCTCTTC
TCGCGCCCTCCCCTGCTTCCCTTCCATCCTCCTCACCACGCCCTCCCTTC
CCTCTCCTCCCATGGCCCGCAGACGTCTTGGTCTGGATATTCGGCGCCTG
GCTTCCGGTGGCGGCATGGGCCGCCTCCTCTCTCTATTTGGCGCGAAAAG
CACGGCGGCCGTACGGAGGCGGGACAGGGAGGGAGAGAGGGGGGGAAGGA
GGGCTGGGGGAGGCGGTGGTGAGGGAAGGGGGGTATGCACAGGCGCTCTT
GCGAAGGGAGGGAGAGCGGGTCTAGGGGGGGAAAAGGGGAGACCAGCCTG
GAGCGAATAG
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Synonyms
Publications