rna417, rna417 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna417
Unique Name	rna417
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	890
Alignment location	CM002455.1:1036172..1038995 +

Link to JBrowse

Properties


Property Name	Value
Product	aconitate mitochondrial
Orig transcript id	gnl\|cribi\|Naga_100003g67.1852.mrna
Orig protein id	gnl\|cribi\|Naga_100003g67.1852
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1036172..1038995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g67	gene401	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna417	rna417-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30335.1	cds417	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1036172..1038995+
coding sequence from alignment at CM002455.1:1036172..1038995+

mRNA sequence

>rna417 ID=rna417|Name=rna417|organism=Nannochloropsis gaditana|type=mRNA|length=890bp
GTCGTGTGACTTCCCTTCTGCCTTCCGAGACGAGCGAGGAGAGGGCTGAG
CTACTGAGCTCGGCGCAGTGGCCGCAGATTTCTGTGCTTGAACGCGTTTT
TGTCATGTGCAACCTTTTTTCAAACAATCCCATGCCCTGTTGATAGATTA
GAGCGATAACATGCCAGACATGGGCTCACGTGGGACACGTCTGCGCAGAA
AGCGTCACGACAGGAGTGGAAGACCTGTCCCATGATTATCTTTGGCTTGA
GCCTCTCGATAAAACGGAGGAGTCTGGTATGCCGACATCAGTCCCACGAG
TTTCGTACTTTTCCTCACACGAAAACAGTGGTAGGTCATGCTGCGGGCAC
TAGCACGTCCATTTCGGAATGGTTTCCATGGTAATCGTCTCGGAAAGAAG
CGGCAACTGTCTGGCTTGGTCGAGAAGAACTACTTCGTTGAGGAATGGAA
TGGCAGGCGCGAGATAACCGAGAAGACATTTAAGTTCAACAGCAAGACGG
TGCCTTCCCTCATCGGCCTCGCCATCGTCTTTCCCGGCTTCATTTATTAC
GTTATGAAGGACGAGCTGAAGAAGAAATACGAGAAACTCGGCTACAATAC
TGAGGAGGGGGGAAACAGGGAGATGATGTGAGAAGTGCTAGAGAAGGCAA
CAAAGAGAAGGGCACTCCCAAAAATGATTAAAAACCAACGAGGCGCGTCA
AGTCACACCCAAGCATCTTCAATGTCAGTAATGCATCCGCGAGATTTATT
TGTCGGTCTGGAACTCCTATCGGTTTTTTAATTTTTTTCGCTATTTAATT
TCTTCCTTGCATGGCGTATCATGTATGATATGGAGATTCGTCCTACAAGT
AAATTGATTCCTTAATGTTTATGGATTAAGAGATACATTG

protein sequence of rna417

>rna417-protein ID=rna417-protein|Name=rna417|organism=Nannochloropsis gaditana|type=polypeptide|length=826bp
MTTICRSCRPLFSALFFLCYCSTPHRYLRFREARGKVSKMLASRSSLGRL
RPAMSTALRGSMSLFQARTLAGTPLSVLDPKGSPTIEETYAKMASRLQVV
RKTLNRPLTLAEKILFAHLDDPTTKVTRGETYLKLRPDRVAMQDATAQMA
VLQFISSGLPKTAVPSTIHCDHLIAAENGSAKDLHAAQVTNKEVYDFLAS
AGAKFGIGFWKPGSGIIHQIILENYAFPGGLIIGTDSHTPNAGGLGLLAI
GVGGADAVDVMAGMPWELKAPKVIGVKLTGEMSGWTSPKDVILKLAGILT
VKGGTGAIVEYFGPGVETVSATGLATIANMGAEIGATTSTFPYTQKMSDY
LRATKREGLADAADKFKANLSADEGCEYDQLIEINLSDLKPHLNGPFTPD
WAHVVGPEFKKTLEEKKWPEELSAGLIGSCTNSSYEDMTRSAALTKQALA
AGLKFKVPFHVTPGSEQVRATIDRDGLIGTFEEAGASVLANACGPCIGQW
HRKDVEKGSKNSIITSYNRNFAKRNDGNPGTHAFVSSPELVTATAFAGTI
TFDPTRDTIKTPDGKDFKFAPPVGMELPPRGFDPGEDTFQAPPENSSGLE
VSVDPASQRLALLEAFDRWNGKDLTDMPVLIKAKGKCTTDHISMAGPWLK
FRGHLDNISNNLLIGAENAETGKINEVTNIITGEKGKVPEVARQYKAKGV
SWVVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGML
PLTFADPKDYDRISGHDRLSILGLSDLQPGKPLKVLVKPAGGKAPFEITV
NHTFNEEQIDWFKYGSALNRMKAMAK

mRNA from alignment at CM002455.1:1036172..1038995+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna417 ID=rna417|Name=rna417|organism=Nannochloropsis gaditana|type=mRNA|length=2824bp|location=Sequence derived from alignment at CM002455.1:1036172..1038995+ (Nannochloropsis gaditana)
ATGACAACGATTTGCCGCTCGTGTCGACCTTTGTTCTCAGCTTTGTTTTT
TCTTTGTTACTGCAGCACACCGCATCGGTATCTACGGTTTCGAGAGGCAC
GAGGGAAAGTATCAAAGATGCTGGCATCTCGTTCTTCCCTTGGGCGCCTG
CGTCCCGCAATGAGCACGGTAAGAACTTAAATATATTGGATTAGATATTT
GTAGGGTTTGttggagggtggggagagcACAAGCTTATTTTTGGAaaagc
ctttcccttctttggAAACGGGCGGTCTGGTTGCACCTGCACCCGCACCT
CGGGATGTGTCGACTTACCGCAAAGTTCCGGTTGTGGTCCGTAATGTAGA
ATGTGGCTTAAACGATCACTGGTCTTGTGTGCTTGTCCCATGCGCCGTTG
CGTCCTTATGTCAGCAATTCTCAGAGATTCTATTATTCCTACTGTGAGTA
TCGCACTTGCCATCATCTCTGGGCTCAACAattccctcgtccttgcccgT
GTTCAACCCAGGCATTGCGGGGCAGCATGTCTTTATTCCAAGCCCGCACC
CTTGCAGGCACCCCTTTGTCCGTCCTGGACCCCAAGGGCAGTCCCACGAT
CGAGGAGACGTACGCCAAGATGGCTAGCCGCCTCCAGGTCGTGCGCAAGA
CGCTGAACCGGCCCCTGACGCTGGCAGAGAAGATCCTTTTTGCCCACCTG
GACGATCCCACGACTAAAGTTACCCGTGGAGAGACGTACTTGAAGCTGCG
CCCGGACCGCGTGGCGATGCAGGACGCGACGGCGCAGATGGCGGTCCTTC
AATTCATCTCCTCGGGCCTGCCCAAGACGGCCGTGCCCAGCACCATCCAC
TGCGACCATCTGATCGCCGCAGAGAACGGCTCGGCCAAGGATCTTCATGC
CGCCCAGGTGACGAACAAGGAAGTTTACGATTTTTTGGCGTCGGCGGGCG
CCAAATTTGGGATCGGGTTCTGGAAACCGGGCTCGGGGATTATCCATCAA
ATCATCTTGGAGAACTACGCCTTCCCCGGCGGCTTGATCATCGGCACGGA
CTCACACACGCCGAATGCGGGGGGTCTGGGCCTGCTGGCGATcggggtgg
gcggggcggatGCCGTGGACGTGATGGCGGGCATGCCCTGGGAGCTCAAG
GCGCCCAAGGTGATCGGCGTGAAGCTGACGGGGGAGATGTCCGGGTGGAC
GAGCCCCAAGGACGTGATCCTCAAACTCGCCGGCATCCTGACCGTGAAGG
GCGGCACGGGCGCCATTGTCGAGTACTTCGGTCCGGGCGTGGAGACCGTC
TCGGCGACGGGGCTGGCTACGATCGCCAACATGGGCGCCGAGATCGGCGC
AACCACCTCCACATTCCCTTACACACAGAAGATGTCGGACTACCTTCGAG
CCACCAAGCGAGAGGGCCTGGCCGATGCTGCGGACAAATTTAAGGCGAAC
CTGAGTGCGGACGAGGGCTGCGAGTACGACCAGCTCATCGAGATCAACCT
GTCGGACCTCAAGCCCCACTTGAACGGACCTTTTACCCCCGACTGGGCCC
ATGTGGTCGGCCCCGAGTTCAAAAagaccctggaggagaagaagtgGCCG
GAGGAATTGTCGGCGGGGCTGATCGGTTCCTGCACGAACTCCTCCTACGA
GGACATGACGCGCTCGGCCGCACTGACCAAACAAGCGCTGGCGGCGGGCT
TGAAGTTCAAAGTTCCTTTCCACGTCACCCCCGGTTCCGAGCAAGTTCGC
GCCACGATCGACCGCGATGGCTTGATTGGCAccttcgaggaggcgggcgc
ctcCGTGCTCGCGAATGCCTGCGGCCCCTGCATCGGACAGTGGCACCgca
aggacgtggagaagggCAGCAAGAACAGCATCATCACCTCCTACAACCGC
AATTTCGCCAAGCGCAACGACGGCAACCCGGGCACCCACGctttcgtctc
ctccccggaACTAGTGACGGCCACGGCCTTCGCAGGCACCATTACTTTCG
ATCCGACACGGGACACGATCAAGACACCGGACGGAAAAGACTTCAAGTTT
GCGCCGCCGGTTGGGATGGAGCTGCCCCCCAGGGGCTTTGACCCGGGAGA
GGACACCTTCCAGGCGCCCCCTGAGAACAGCTCGGGCTTGGAGGTGTCCG
TGGATCCTGCCTCGCAGCGTCTGGCCCTGCTCGAGGCCTTCGACCGATGG
AATGGGAAGGACCTGACCGACATGCCCGTGCTGATCAAAGCCAAGGGGAA
GTGCACCACTGACCACATCAGTATGGCGGGCCCCTGGTTGAAGTTCCGCG
GGCACTTGGACAATATCTCCAACAACCTGCTGATCGGCGCCGAGAACgcg
gagacggggaagaTCAATGAGGTGACGAACATCAtcacgggggagaaggg
gaaagtcCCCGAGGTCGCGCGACAGTACAAGGCAAAGGGGGTGAGctggg
tggtggtgggcgacGAGAACTACGGGGAAGGCTCGTCGCGTGAGCACGCC
GCCTTGGAGCCCCGGCATTTGGGGGGACGCGCCATCATTGTCAAGAGCTT
TGCGCGCATCCACGAAACTAATTTGAAGAAGCAAGGCATGCTGCCCCTGA
CTTTCGCGGACCCGAAGGACTACGATCGAATCTCAGGCCACGACCGCCTC
TCGATCCTGGGACTGAGCGATCTGCAGCCTGGCAAGCCGCTGAAGGTGTT
GGTGAAGcctgcgggagggaaagcgccgTTCGAGATTACCGTCAACCATA
CCTTCAACGAGGAGCAAATTGACTGGTTTAAGTACGGCTCGGCTTTGAAC
CGGATGAAGGCCATGGCGAAGTGA

Coding sequence (CDS) from alignment at CM002455.1:1036172..1038995+

>rna417 ID=rna417|Name=rna417|organism=Nannochloropsis gaditana|type=CDS|length=4962bp|location=Sequence derived from alignment at CM002455.1:1036172..1038995+ (Nannochloropsis gaditana)
ATGACAACGATTTGCCGCTCGTGTCGACCTTTGTTCTCAGCTTTGTTTTT
TCTTTGTTACTGCAGCACACCGCATCGGTATCTACGGTTTCGAGAGGCAC
GAGGGAAAGTATCAAAGATGCTGGCATCTCGTTCTTCCCTTGGGCGCCTG
CGTCCCGCAATGAGCACGGCATTGCGGGGCAGCATGTCTTTATTCCAAGC
CCGCACCCTTGCAGGCACCCCTTTGTCCGTCCTGGACCCCAAGGGCAGTC
CCACGATCGAGGAGACGTACGCCAAGATGGCTAGCCGCCTCCAGGTCGTG
CGCAAGACGCTGAACCGGCCCCTGACGCTGGCAGAGAAGATCCTTTTTGC
CCACCTGGACGATCCCACGACTAAAGTTACCCGTGGAGAGACGTACTTGA
AGCTGCGCCCGGACCGCGTGGCGATGCAGGACGCGACGGCGCAGATGGCG
GTCCTTCAATTCATCTCCTCGGGCCTGCCCAAGACGGCCGTGCCCAGCAC
CATCCACTGCGACCATCTGATCGCCGCAGAGAACGGCTCGGCCAAGGATC
TTCATGCCGCCCAGGTGACGAACAAGGAAGTTTACGATTTTTTGGCGTCG
GCGGGCGCCAAATTTGGGATCGGGTTCTGGAAACCGGGCTCGGGGATTAT
CCATCAAATCATCTTGGAGAACTACGCCTTCCCCGGCGGCTTGATCATCG
GCACGGACTCACACACGCCGAATGCGGGGGGTCTGGGCCTGCTGGCGATc
ggggtgggcggggcggatGCCGTGGACGTGATGGCGGGCATGCCCTGGGA
GCTCAAGGCGCCCAAGGTGATCGGCGTGAAGCTGACGGGGGAGATGTCCG
GGTGGACGAGCCCCAAGGACGTGATCCTCAAACTCGCCGGCATCCTGACC
GTGAAGGGCGGCACGGGCGCCATTGTCGAGTACTTCGGTCCGGGCGTGGA
GACCGTCTCGGCGACGGGGCTGGCTACGATCGCCAACATGGGCGCCGAGA
TCGGCGCAACCACCTCCACATTCCCTTACACACAGAAGATGTCGGACTAC
CTTCGAGCCACCAAGCGAGAGGGCCTGGCCGATGCTGCGGACAAATTTAA
GGCGAACCTGAGTGCGGACGAGGGCTGCGAGTACGACCAGCTCATCGAGA
TCAACCTGTCGGACCTCAAGCCCCACTTGAACGGACCTTTTACCCCCGAC
TGGGCCCATGTGGTCGGCCCCGAGTTCAAAAagaccctggaggagaagaa
gtgGCCGGAGGAATTGTCGGCGGGGCTGATCGGTTCCTGCACGAACTCCT
CCTACGAGGACATGACGCGCTCGGCCGCACTGACCAAACAAGCGCTGGCG
GCGGGCTTGAAGTTCAAAGTTCCTTTCCACGTCACCCCCGGTTCCGAGCA
AGTTCGCGCCACGATCGACCGCGATGGCTTGATTGGCAccttcgaggagg
cgggcgcctcCGTGCTCGCGAATGCCTGCGGCCCCTGCATCGGACAGTGG
CACCgcaaggacgtggagaagggCAGCAAGAACAGCATCATCACCTCCTA
CAACCGCAATTTCGCCAAGCGCAACGACGGCAACCCGGGCACCCACGctt
tcgtctcctccccggaACTAGTGACGGCCACGGCCTTCGCAGGCACCATT
ACTTTCGATCCGACACGGGACACGATCAAGACACCGGACGGAAAAGACTT
CAAGTTTGCGCCGCCGGTTGGGATGGAGCTGCCCCCCAGGGGCTTTGACC
CGGGAGAGGACACCTTCCAGGCGCCCCCTGAGAACAGCTCGGGCTTGGAG
GTGTCCGTGGATCCTGCCTCGCAGCGTCTGGCCCTGCTCGAGGCCTTCGA
CCGATGGAATGGGAAGGACCTGACCGACATGCCCGTGCTGATCAAAGCCA
AGGGGAAGTGCACCACTGACCACATCAGTATGGCGGGCCCCTGGTTGAAG
TTCCGCGGGCACTTGGACAATATCTCCAACAACCTGCTGATCGGCGCCGA
GAACgcggagacggggaagaTCAATGAGGTGACGAACATCAtcacggggg
agaaggggaaagtcCCCGAGGTCGCGCGACAGTACAAGGCAAAGGGGGTG
AGctgggtggtggtgggcgacGAGAACTACGGGGAAGGCTCGTCGCGTGA
GCACGCCGCCTTGGAGCCCCGGCATTTGGGGGGACGCGCCATCATTGTCA
AGAGCTTTGCGCGCATCCACGAAACTAATTTGAAGAAGCAAGGCATGCTG
CCCCTGACTTTCGCGGACCCGAAGGACTACGATCGAATCTCAGGCCACGA
CCGCCTCTCGATCCTGGGACTGAGCGATCTGCAGCCTGGCAAGCCGCTGA
AGGTGTTGGTGAAGcctgcgggagggaaagcgccgTTCGAGATTACCGTC
AACCATACCTTCAACGAGGAGCAAATTGACTGGTTTAAGTACGGCTCGGC
TTTGAACCGGATGAAGGCCATGGCGAAGTGAATGACAACGATTTGCCGCT
CGTGTCGACCTTTGTTCTCAGCTTTGTTTTTTCTTTGTTACTGCAGCACA
CCGCATCGGTATCTACGGTTTCGAGAGGCACGAGGGAAAGTATCAAAGAT
GCTGGCATCTCGTTCTTCCCTTGGGCGCCTGCGTCCCGCAATGAGCACGG
CATTGCGGGGCAGCATGTCTTTATTCCAAGCCCGCACCCTTGCAGGCACC
CCTTTGTCCGTCCTGGACCCCAAGGGCAGTCCCACGATCGAGGAGACGTA
CGCCAAGATGGCTAGCCGCCTCCAGGTCGTGCGCAAGACGCTGAACCGGC
CCCTGACGCTGGCAGAGAAGATCCTTTTTGCCCACCTGGACGATCCCACG
ACTAAAGTTACCCGTGGAGAGACGTACTTGAAGCTGCGCCCGGACCGCGT
GGCGATGCAGGACGCGACGGCGCAGATGGCGGTCCTTCAATTCATCTCCT
CGGGCCTGCCCAAGACGGCCGTGCCCAGCACCATCCACTGCGACCATCTG
ATCGCCGCAGAGAACGGCTCGGCCAAGGATCTTCATGCCGCCCAGGTGAC
GAACAAGGAAGTTTACGATTTTTTGGCGTCGGCGGGCGCCAAATTTGGGA
TCGGGTTCTGGAAACCGGGCTCGGGGATTATCCATCAAATCATCTTGGAG
AACTACGCCTTCCCCGGCGGCTTGATCATCGGCACGGACTCACACACGCC
GAATGCGGGGGGTCTGGGCCTGCTGGCGATcggggtgggcggggcggatG
CCGTGGACGTGATGGCGGGCATGCCCTGGGAGCTCAAGGCGCCCAAGGTG
ATCGGCGTGAAGCTGACGGGGGAGATGTCCGGGTGGACGAGCCCCAAGGA
CGTGATCCTCAAACTCGCCGGCATCCTGACCGTGAAGGGCGGCACGGGCG
CCATTGTCGAGTACTTCGGTCCGGGCGTGGAGACCGTCTCGGCGACGGGG
CTGGCTACGATCGCCAACATGGGCGCCGAGATCGGCGCAACCACCTCCAC
ATTCCCTTACACACAGAAGATGTCGGACTACCTTCGAGCCACCAAGCGAG
AGGGCCTGGCCGATGCTGCGGACAAATTTAAGGCGAACCTGAGTGCGGAC
GAGGGCTGCGAGTACGACCAGCTCATCGAGATCAACCTGTCGGACCTCAA
GCCCCACTTGAACGGACCTTTTACCCCCGACTGGGCCCATGTGGTCGGCC
CCGAGTTCAAAAagaccctggaggagaagaagtgGCCGGAGGAATTGTCG
GCGGGGCTGATCGGTTCCTGCACGAACTCCTCCTACGAGGACATGACGCG
CTCGGCCGCACTGACCAAACAAGCGCTGGCGGCGGGCTTGAAGTTCAAAG
TTCCTTTCCACGTCACCCCCGGTTCCGAGCAAGTTCGCGCCACGATCGAC
CGCGATGGCTTGATTGGCAccttcgaggaggcgggcgcctcCGTGCTCGC
GAATGCCTGCGGCCCCTGCATCGGACAGTGGCACCgcaaggacgtggaga
agggCAGCAAGAACAGCATCATCACCTCCTACAACCGCAATTTCGCCAAG
CGCAACGACGGCAACCCGGGCACCCACGctttcgtctcctccccggaACT
AGTGACGGCCACGGCCTTCGCAGGCACCATTACTTTCGATCCGACACGGG
ACACGATCAAGACACCGGACGGAAAAGACTTCAAGTTTGCGCCGCCGGTT
GGGATGGAGCTGCCCCCCAGGGGCTTTGACCCGGGAGAGGACACCTTCCA
GGCGCCCCCTGAGAACAGCTCGGGCTTGGAGGTGTCCGTGGATCCTGCCT
CGCAGCGTCTGGCCCTGCTCGAGGCCTTCGACCGATGGAATGGGAAGGAC
CTGACCGACATGCCCGTGCTGATCAAAGCCAAGGGGAAGTGCACCACTGA
CCACATCAGTATGGCGGGCCCCTGGTTGAAGTTCCGCGGGCACTTGGACA
ATATCTCCAACAACCTGCTGATCGGCGCCGAGAACgcggagacggggaag
aTCAATGAGGTGACGAACATCAtcacgggggagaaggggaaagtcCCCGA
GGTCGCGCGACAGTACAAGGCAAAGGGGGTGAGctgggtggtggtgggcg
acGAGAACTACGGGGAAGGCTCGTCGCGTGAGCACGCCGCCTTGGAGCCC
CGGCATTTGGGGGGACGCGCCATCATTGTCAAGAGCTTTGCGCGCATCCA
CGAAACTAATTTGAAGAAGCAAGGCATGCTGCCCCTGACTTTCGCGGACC
CGAAGGACTACGATCGAATCTCAGGCCACGACCGCCTCTCGATCCTGGGA
CTGAGCGATCTGCAGCCTGGCAAGCCGCTGAAGGTGTTGGTGAAGcctgc
gggagggaaagcgccgTTCGAGATTACCGTCAACCATACCTTCAACGAGG
AGCAAATTGACTGGTTTAAGTACGGCTCGGCTTTGAACCGGATGAAGGCC
ATGGCGAAGTGA

Synonyms

Publications