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Properties
| Property Name | Value |
|---|
| Product | Pentatricopeptide repeat containing protein |
| Orig transcript id | gnl|cribi|Naga_100141g3.8384.mrna |
| Orig protein id | gnl|cribi|Naga_100141g3.8384 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:1006374..1008466 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4158 ID=rna4158|Name=rna4158|organism=Nannochloropsis gaditana|type=mRNA|length=2044bp
TGTGCGGCCATGAAGTGCTATCTCTACGACGACGATAATCTGCCCAGCAA
GCGGAGGCCTCAAGTATACACGAGCTGTACTGCACGCAACCTTTCCTTAG
ATAAATCCAACTTCGCAAGTCGTGGATCTCAATGGCTGATCGACCCATGC
AACAGAGTCATACGACTGCCCTGCCCGATTTTGTCGAAGAAACGGACCTG
GCTTTAAGTCGTTTTGGTGGCAGAATATGCTTTGCAACCGACGATTGGTT
TGCTGCCGCAGAGAATTTACTCGATCACGAGGAACCGATTTTTATCCCAG
ATAAATTCACAGCCTACGGAAAATGGATGGATGGGTGGGAGACACGGCGA
AAACGTACAGCAGGTCACGATTGGTGTATTATCAAATTGGCTTTCCCCGG
TCGCATTTTGGGCGTGGGTGTGGACACCTCCTTCTTCACAGGCAACTACG
TGCCTCGCTGCTCTATCCAAGCTGCCTCATACATTGATGACAACGAACCC
ATCGCCCTTCAAAAACTGGCTGCAGCACGCACTGAGGTTCCAGGTGGAGA
TAAAATAGGCAGCAAGGCCTCTGAGGAGGAGATGACCTTAGCAGCGAGCG
TCCATTCGGATAGTTGGGAAACCATTTTACCCTTCACCCCCTTGGGTGCC
GGTTACAAAGATACGTGCCACAACTATTTTGCCATTGAAGCCACAGAGCG
CTTCACCCACCTGCGCCTGAACATGTTTCCCGACGGCGGCATCGCGCGTC
TGCGTGTGTACGGAATCGTCGCCCGAGCCTGGCATTTGGTCCCGGCCACC
CAGGTCGTGGATCTGGCAGCCGTTGAGAATGGCGGAAAGGCCATCGGATG
CAGTGACAAGCACTATGGCCACCCTCGGAACTTGATCAACCCGGGGCGTG
GGATCAACATGGGGGACGGTTGGGAGACCGCTCGGAAGTTGACCCGGCCT
CCCGTGCTCGAGCCTGACGAAGGAGGACTTATCAAGGTACCCGGAAGTGA
TTGGGCCGTTTTACGCTTGGGAACGCCTGGGAAGGTCCGAGAGCTTGAAA
TTGACACGTGTTGGTTCAAGGGGAATTACCCTGAAAGCTGTCAGGTGGAG
GCAGTCGAGTTGCCCCTGGACATGTCGAATGAGGACGTGCACAAGGCGCA
AGAGCTAGGGGAAGTGCCTTGGCGCATCTTGCTGCCTAGAACAAAGTTGG
GAGCAGATCAACAGGCTTACTTTGATGTGGGGGCGGAGGGAGGACGGGCG
GAAGCGGGGGGGGCGGTGACGCACTTAAAACTGACAATATATCCCGATGG
AGGGATCTCACGAGTGCGCGCCCGAGGGACCAAAGTGGAAGTATAAGTCA
ATGACACCGGCTTTGCCGTACTAAAAACAATTGAACGTGCGTTCCTGGTA
GGGGAGGGACGGACAAGGAGAGGGAGCGTCACAGGGAAGGGTTGTGTGGC
ATGGGGAAGACCTCGATGCGCAGGAGGCCCATGTCAGGCGCCAACGGGCC
CAAAAGAAGGAGTGCACGAAAGTTGTGATTCGAAAGGGATGTGGCTGTTG
GAGAATGGTAGTTGGATGTTAAAGAGGACCGCGGGGGGAACGCAATGCTA
GCGGGCATCGGGTTCCCCGAGAAAGGCAAGTTCAAAGGGATGGACGCTTC
GATGCGGTAGATGATAAATGTGCTTGCTGCACTTGATATCATGTCTTTTG
TGATCGTTCATTCATGTGGCATCCATTCATACAAAGCATCTGTGAACTAA
TTATTAACCCTCTCCAATTCGTCATATTCCTCATCAATCCAAGCCTTCGA
GGCCCCGATGCGTAAGACGCTGTAAACCCTCACAGGTGTACAACGAGCAG
GGGAACGTCGTTGCATATATACAAGGAAAAAGTGAAACAATGTTTTTCCT
CTCACGACCCTCAGCCGATCCTAATAATGAATACCTGAACCATCTGAATA
TTACTCTCTTATACAAGCGATGTCTCGAGCTTTTCTTCGCGAGGTATCAA
GGCTAGCCTGGCCGTCCTGAAAAATGCTTTCTGGACCTCACTCT back to topprotein sequence of rna4158 >rna4158-protein ID=rna4158-protein|Name=rna4158|organism=Nannochloropsis gaditana|type=polypeptide|length=561bp
MEGRGRVLSHVLVSLSRAGQGPQALALSRRALRPPLSWANDMSQQGCGRV
DGVVDREEASPMSALRSQRLRALQDERRRVWHRYNKQDMYEGLVEASSSL
SSTEAHPATAPYSDATPHGEERDSSIHRHLSWSAWQELAKAAKVLAKERE
SGGKRKRRRNRKAVSESGNDVREAGGKESSDQGGELLWVLKAMLEAGVAP
SRGDLEWSLQMLASQKAWDALEDLLEKAAAVHVAGGGKDESVVGEDGRGE
DMGGSGRSQDPIKSTCLDVIGCNRLLHAMAQNGEGERSVTFLKFMRDRIG
VVPDMISYTSAMDACGRGGDWRGALNLLETIEREKNRGERGLRANLITYT
VVMKACAQAGQWQPCIALLERLMKSDSQGAEEPECLRPDTIACNVALEAC
AQGLQPNAALRLLKKMEEGWDGVQGMSPAPDQISYTNVIRALRRGGGNGE
DVVKTVHQILQRAKARKLRPDNRLYNSALKVYVHEGHWRLAKELLKDMDQ
RQMIPDEFTVRILTRGRGKGGGGGRERGQTLALLRDMQDRLGDLQHSRRR
DNKRYMMSAPH back to topmRNA from alignment at CM002462.1:1006374..1008466+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4158 ID=rna4158|Name=rna4158|organism=Nannochloropsis gaditana|type=mRNA|length=2093bp|location=Sequence derived from alignment at CM002462.1:1006374..1008466+ (Nannochloropsis gaditana)
TTTGCTGCCTTAGGTAGGACCGCGAGTGCCCTATTGGGGGAGATATTGGA
AGAACGGGGCGGAGATGTCGCAGGCAGGAGAGACGTGCGACGGAGACGGC
AAGCGTTAGAACTGGTCAGAGAAATTGCGCTGGTGGCAGccgcaggggcg
ggggactGGCGACGCgcgttgttgttgttgagggagcgagaagccctggg
agaaggagggggcgggggagcggtTGGTGGGCTGGGCTTGAGAGCTCGGT
ACGCATTGGCCATCGAGGCTTGTGCACGCGCGGGCCGATATCGGGAAGGG
TTGGCCCTCTTGGAGGGACGGTCactgggcgtggggaagatggaggggag
ggggagggtgttgAGCCACGTCTTAGTCTCGTTAAGCAGGGCAGGGCAGG
GTCCCCAGGCTCTGGCATTGAGTAGACGCGCTTTGCGGCCTCCGCTTTCG
TGGGCGAATGACATGAGTCAGCAAGGCTGTGGACGTGTGGATGGtgttgt
ggaccgggaggaggcttccCCCATGTCTGCCCTACGCTCCCAGCGTCTGC
GGGCGTTGCAGGATGAAAGACGTCGGGTCTGGCACCGGTACAACAAGCAG
GACATGTATGAGGGTCTGGTGGAAGCTTCCTCATCGTTGTCCTCGACGGA
AGCACACCCTGCAACTGCCCCGTACTCCGATGCCACTCCACATGGGGAAG
AGCGGGATTCCTCCATCCATAGGCACCTCTCGTGGTCCGCCTGGCAGGAG
TTGGCGAAGGCCGCCAAGGTCTTGGccaaggaaagagaaagcggagggaa
gcgaaaacggaggaggaatagGAAAGCTGTGTCGGAAAGCGGAAACGATG
TGAGGGaagctggagggaaagaaagctcTGATCAAGGGGGTGAACTCCTG
TGGGTGTTGAAGGCCATGCTGGAAGCAGGCGTGGCCCCTAGCAGAGGCGA
CTTGGAATGGAGCTTGCAGATGCTAGCGAGTCAAAAGGCATGGGATGCCT
TGGAAGACCTCTTGGAGAAAGCAGCTGCAGTTCACGTGGccggaggaggc
aaggacgaAAGTGTTGttggggaagatggaagaggggaagacatgGGCGG
GTCCGGGCGGAGCCAGGACCCGATAAAAAGCACTTGTTTGGACGTGATTG
GATGCAATCGATTATTGCATGCGATGGCGCaaaatggggaaggagagcgg
tcGGTGACCTTCCTAAAATTTATGCGAGATCGGATCGGTGTGGTGCCGGA
CATGATCTCGTACACTAGCGCCATGGACGCttgtgggagagggggagact
GGCGGGGGGCATTGAACTTATTGGAGACTAtcgaaagagaaaaaaacaga
ggagaaagaggcttgAGGGCCAATTTGATCACCTACACGGTGGTGATGAA
AGCCTGTGCTCAAGCTGGACAATGGCAACCATGCATCGCTTTGCTGGAGA
GGTTAATGAAGAGCGACAGTCAAGGGGCTGAAGAGCCAGAATGTTTGAGA
CCGGATACGATCGCTTGTAATGTTGCATTGGAGGCGTGTGCGCAAGGATT
GCAGCCAAATGCGGCGTTGAGGCTTCTtaaaaagatggaggaagggtggg
acggggtACAGGGGATGTCCCCGGCGCCGGACCAGATTTCTTACACGAAT
GTAATTCGTGCTCttagaagaggagggggaaatggggAGGATGTCGTGAA
GACAGTGCATCAGATTTTACAACGGGCCAAAGCTCGGAAACTGAGACCGG
ACAATAGATTGTACAACAGTGCTTTAAAAGTGTATGTTCATGAAGGCCAC
TGGCGACTCGCAAAAGAGCTACTGAAAGACATGGATCAGAGACAGATGAT
TCCTGATGAGTTTACAGTGCGAATTTTGACACGTGGAAGAGGtaaaggtg
gaggaggggggcgagagcgCGGGCAGACACTTGCCCTGCTTCGAGACATG
CAAGACCGTTTGGGAGACCTCCAGCACAGTAGAAGACGAGATAATAAAAG
GTACATGATGAGCGCGCCACATTGATGAGTGTGTATACGAAATATAGAGC
TGTAAATGATCGAAATAAAAACAAAGGCGATGTACAGAATGAG back to topCoding sequence (CDS) from alignment at CM002462.1:1006374..1008466+ >rna4158 ID=rna4158|Name=rna4158|organism=Nannochloropsis gaditana|type=CDS|length=1686bp|location=Sequence derived from alignment at CM002462.1:1006374..1008466+ (Nannochloropsis gaditana)
atggaggggagggggagggtgttgAGCCACGTCTTAGTCTCGTTAAGCAG
GGCAGGGCAGGGTCCCCAGGCTCTGGCATTGAGTAGACGCGCTTTGCGGC
CTCCGCTTTCGTGGGCGAATGACATGAGTCAGCAAGGCTGTGGACGTGTG
GATGGtgttgtggaccgggaggaggcttccCCCATGTCTGCCCTACGCTC
CCAGCGTCTGCGGGCGTTGCAGGATGAAAGACGTCGGGTCTGGCACCGGT
ACAACAAGCAGGACATGTATGAGGGTCTGGTGGAAGCTTCCTCATCGTTG
TCCTCGACGGAAGCACACCCTGCAACTGCCCCGTACTCCGATGCCACTCC
ACATGGGGAAGAGCGGGATTCCTCCATCCATAGGCACCTCTCGTGGTCCG
CCTGGCAGGAGTTGGCGAAGGCCGCCAAGGTCTTGGccaaggaaagagaa
agcggagggaagcgaaaacggaggaggaatagGAAAGCTGTGTCGGAAAG
CGGAAACGATGTGAGGGaagctggagggaaagaaagctcTGATCAAGGGG
GTGAACTCCTGTGGGTGTTGAAGGCCATGCTGGAAGCAGGCGTGGCCCCT
AGCAGAGGCGACTTGGAATGGAGCTTGCAGATGCTAGCGAGTCAAAAGGC
ATGGGATGCCTTGGAAGACCTCTTGGAGAAAGCAGCTGCAGTTCACGTGG
ccggaggaggcaaggacgaAAGTGTTGttggggaagatggaagaggggaa
gacatgGGCGGGTCCGGGCGGAGCCAGGACCCGATAAAAAGCACTTGTTT
GGACGTGATTGGATGCAATCGATTATTGCATGCGATGGCGCaaaatgggg
aaggagagcggtcGGTGACCTTCCTAAAATTTATGCGAGATCGGATCGGT
GTGGTGCCGGACATGATCTCGTACACTAGCGCCATGGACGCttgtgggag
agggggagactGGCGGGGGGCATTGAACTTATTGGAGACTAtcgaaagag
aaaaaaacagaggagaaagaggcttgAGGGCCAATTTGATCACCTACACG
GTGGTGATGAAAGCCTGTGCTCAAGCTGGACAATGGCAACCATGCATCGC
TTTGCTGGAGAGGTTAATGAAGAGCGACAGTCAAGGGGCTGAAGAGCCAG
AATGTTTGAGACCGGATACGATCGCTTGTAATGTTGCATTGGAGGCGTGT
GCGCAAGGATTGCAGCCAAATGCGGCGTTGAGGCTTCTtaaaaagatgga
ggaagggtgggacggggtACAGGGGATGTCCCCGGCGCCGGACCAGATTT
CTTACACGAATGTAATTCGTGCTCttagaagaggagggggaaatggggAG
GATGTCGTGAAGACAGTGCATCAGATTTTACAACGGGCCAAAGCTCGGAA
ACTGAGACCGGACAATAGATTGTACAACAGTGCTTTAAAAGTGTATGTTC
ATGAAGGCCACTGGCGACTCGCAAAAGAGCTACTGAAAGACATGGATCAG
AGACAGATGATTCCTGATGAGTTTACAGTGCGAATTTTGACACGTGGAAG
AGGtaaaggtggaggaggggggcgagagcgCGGGCAGACACTTGCCCTGC
TTCGAGACATGCAAGACCGTTTGGGAGACCTCCAGCACAGTAGAAGACGA
GATAATAAAAGGTACATGATGAGCGCGCCACATTGA back to top
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