rna4155, rna4155 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4155
Unique Name	rna4155
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2093
Alignment location	CM002462.1:997466..999354 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100141g6.8379.mrna
Orig protein id	gnl\|cribi\|Naga_100141g6.8379
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:997466..999354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g6	gene3999	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4155	rna4155-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26532.1	cds4145	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:997466..999354+
coding sequence from alignment at CM002462.1:997466..999354+

mRNA sequence

>rna4155 ID=rna4155|Name=rna4155|organism=Nannochloropsis gaditana|type=mRNA|length=2093bp
TTGACAGGGCGCAATTTAGTCGGACTGACTCGACGGTTCCAACCCGCTCT
CGGTCAAGCCAAGATCGGCTTCCCGCATGCCTCTGCGATCTCTCTCGTCG
CTTCTTACTCGTGGTCGTGCACCGACAGCTAATCTCACTCGTCACACTTT
GTTGGTCCCGGCATGCGTCGCTCCTCGTTTTCCCTGGTGCCATCCTCTCC
TCCTTCACCTCGCTCGTGCTGCCACCACCACGACTATCCCGTCTGTGTCT
CATCCCCCCCAGGATGCCGTCGTACCACAGGAACCACGTCGTTCTCACAA
GATTGATTTCGGAAACACAAAAGTAGCTTACGCTTCCGTCTCGACCGGGG
AGCTGGTGCGGGCCTATCTGGTGTTCAAAGCATGTTCATTTCGACCCCTG
GTGACGCATGCAGATAAACTCCTTCAAATCTCCTACCGGCTCCTGGGTCA
AGCCATCACCGAATCCATCGTCCGTAACACATTTTTCGCGCATTTTTGCG
CAGGTGAGACCAGCCAGACCATCCGACCGCGCATCGAGGAGCTCCGGAAG
GGGGGTGTTGCCGGTATCTTGGATTATGCCGCAGAGGCCGACATCACGCA
GATGATGACCTCCCCCCTGACCAAACCCAAGACCCACGCCTACAAAGAGG
GCGAGATCGCTTGCCGTGTCTACAGTTACGAAAGCGAACGGCAATGCGAC
GCGCACGTGGAGACATTTTTGGATTGCATCCATGCGGTGAAAGACGTGAC
GCCAGAGGGCTTTGCCGCTATCAAAATCACGGCTTTGGGGAACCCCCACC
TGTTGGAGCGCATGTCCGTGTGCATCGAAGAGACGGACAGGCTGTTCAAG
AAGATGGACCGGGAAGGGAAAGGATGGATCACGCGCAAGGAGTTTTTGGA
CGGTTACGACCGTTTCTTCCGGTCAACGCCTGCCCCGCCATCAGAGACCT
CACCGGTCCCCACGGGGATCTGGGCTGTGAAGCCAGAGGAAATGGCCACC
CAGCTGCTCAATCGTTTGGACCCGGACAATACGGACCGGATCGACGTGAT
CGACTGGCGCATGGCGGTGAACATCTCGGACATGCCCGCGTTGACCCATC
AATGCCGGGAAACTGGCCCCTTGAAGAATGCGGCCCTCTCGGAGCAAGAG
ATGGAATTGATGCGGGCAATGCAGCTGCGATTGGAGATGCTGGCAGGGCG
GGCGGCTACCCTGGGGGTGCGTCTGATGATTGACGCGGAACAGAGTTATT
TCCAACCCGCCATCGATTTCTTGATTCTGGACGTGATGCAACGACACAAC
CGGGACGCCTTTGTCGTCTACACCACCATGCAATGCTACCTGAGGGACGC
CACGGAACGGTTGGAAATGGAAATAGAGAGGGCGCGCCGGGGTGGTTTCT
TGTTTGCGGCGAAACTGGTCCGGGGTGCATACATGGTCTCGGAAAGGAAG
CGGGCAGCGGAAAAGGGGTATGAGTCTCCCATCCACGACACCATTGAGGC
CACACACGCCACTTACGATGGCTGTGTATCCACGTTCTTGGAGCGGATGG
CCGCCGGTGAGAAGCTTGAAGTGTTGGTAGCAACGCACAACCAGGCGAGC
ATCGAGAAAACTTTGAGCGGGATGGATCGACTGGGTTTGCGGGGGGAGAC
CTCCGGCGTCTACTTTGGGCAATTGCTGGGCATGGCGGATCATCTGACAT
TGAGCTTAGGCAGCGCGGGGTACAAGGCCTACAAGTATGTACCTTACGGA
TTGGTGGGGCAAGTGCTTCCTTACCTAATCCGACGGGCCCAGGAAAATAG
CGATGTTATGGGGGGGGTGAAGCATGAGCAAGGTCTGATTCGTGCCGAGC
TTTGGCGTCGCATGTTATCTGCATAAAGGAACAAGAGAGGTGAAACCAGC
GGGCGATGACGAGTGAAATTTGATGATCAAAATATCATGTCATGTAGGAG
AAAGTGATGAAAACACCGGGGGGGGGAACCTGTTGAGGGGTGGGGTAGAT
AGACTGATGTGGTATCTCAAGACATGTGGCTGGGATTGTGAAGGGCTGTT
GGACAAAAAAAGTGAATATAAAATGATAGGGTTCCGTCATGTC

protein sequence of rna4155

>rna4155-protein ID=rna4155-protein|Name=rna4155|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MLNRGIVLQVAFVVVYFAWIGTAFYVPSPTPNWWLAPSPKTRENPSACKS
AHVILCASYQEQLARARAEKAARQAGGGAVPQPQYQPPSDAYRASYPSPA
KQAQQAQTVSYSPQEEQQRNRPPHSGSPLPQETNEAVATLLNLLGERLGT
GQPLAPEKVRVFTAAAEAVIKEARGIGYSVNAPVGQQQEAYQSQAQTFYS
PQQPRQPEQTQPHHQQDYPRHQSQAPSFTASGFEQDEDIPWEMGSRTLTG
PAPGFRAASAYQPAGAGGFDEEGDDFETYGLPQPVTRQKKSPFMETLKGT
PFYVDIAEQPVSSDEYLRIIQSRIKAAQMKRRQEQAHTGIESANHYMEEL
NRKKQERLRLEAEQARQWQEGGQ

mRNA from alignment at CM002462.1:997466..999354+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4155 ID=rna4155|Name=rna4155|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp|location=Sequence derived from alignment at CM002462.1:997466..999354+ (Nannochloropsis gaditana)
AGCTCCTTGATGTCCAAACTTGCTGCAACTAGCAATTTACACCGGTGAAC
GCCTTGTGCAACGTCGGGCTTCAATTCCGATGTTTGGAAGGATTCATTGG
TCGTTTAGTGGTAATTCTGTAGAAGACATGCAAAAGGATGGCCTTACATC
TTGGCTAAGACGAGCGACTTGAAGCCAGCGCCACGACCGTGTTGAAGCGT
CAGATAAACCTCAACTATTTCACATTTCAAAGTCACAGCTCACAATCATG
CTTAATAGAGGAATTGTTCTTCAGGTAGCGTTCGTGGTGGTCTACTTTGC
GTGGATCGGCACGGCCTTTTACGTACCATCCCCCACGCCAAATTGGTGGC
TTGCTCCCAGTCCGAAGACAAGAGAAAACCCCTCCGCGTGCAAGTCTGCT
CACGTCATTCTGTGCGCATCATATCAAGAGCAACTCGCACGGGCTAGGGC
GGAAAAAGCTGCTCGACaggctggaggcggtgctGTCCCCCAGCCGCAGT
ATCAGCCACCCTCAGATGCGTATCGTGCCTCTTACCCCTCTCCGGCCAAG
CAAGCCCAGCAAGCCCAGACTGTTTCATACTCTCCACAGGAAGAACAGCA
ACGAAATCGACCACCACATTCGGGGAGTCCGTTGCCTCAGGAAACAAACG
AAGCAGTCGCGACGTTGCTCAACCTGCTAGGGGAGCGTCTCGGGACGGGG
CAGCCATTGGCACCGGAAAAAGTGCGGGTGTTCACCGCGGCAGCTGAGGC
TGTGATTAAGGAGGCACGCGGCATTGGATACAGCGTGAATGCACCGGTtg
gacagcagcaggaggctTATCAGTCACAAGCGCAGACGTTTTATTCACCA
CAGCAGCCGAGGCAGCCGGAACAAACCCAACCGCATCACCAACAAGACTA
CCCAAGACATCAATCCCAGGCCCCATCGTTCACGGCCAGCGGTTTCGAGC
AAGACGAAGATATTCCTTGGGAAATGGGCTCGCGGACGTTGACGGGTCCG
GCGCCTGGTTTCCGGGCAGCTTCGGCCTACCAGCCTGCGGGAGCGGGTGG
TtttgacgaagagggggatgaCTTTGAGACTTACGGGCTGCCTCAACCTG
TGACAAGGCAAAAGAAAAGTCCATTCATGGAAACGCTGAAAGGCACGCCG
TTTTATGTGGACATTGCAGAGCAACCAGTGAGCTCGGACGAGTATCTGAG
GATTATCCAGAGCCGAATTAAAGCGGCTCAAATGAAACGCCGGCAGGAGC
AAGCTCATACGGGCATTGAGTCCGCAAATCATTACATGGAGGAATTAAAT
CGTAAAAAACAAGAACGTTTGCGATTAGAGGCGGAGCAGGCTCGACagtg
gcaggaagggggTCAGTGAGAGCGTGGGGCGGATACCTGTTTCGAAGATA
ACTGGCCTGGAATAGAATGACGGGCGCATGTATCAAGAATTCATCATCGT
GAAAATAATTCTAGAAGGTGCTACATCCTCATAAAGTGATAATTTTAAGT
GATAATTTTTGACCGTAAATTTCTGTTATCGATCCTTTTCCGCGATTACG
ATCGTACACGGAAACATGAGAAACGGATACATATATGTTTTGCCTCTTAA
TCGAATTTTGATGCATTTATAAAGAATTCAATATCGTCCTAGTCACAACT
TCAAAAGAAATGGCGCCATGGACAATTTCTTTGTCCGCCGAATCGTCATG
GTCATGGCAAGTTCACAAGGCTTTCCATTAGAACAGACATTTAAGAATTT
GAATCTGCAACGGTTCGGAGAAGAGAAAACCTATGGAAACTGACATAATG
GGAATGAGAAATTGTGTTCCAGGATCCATGCGGATTTACGGAATTTAAAA
TTTACTTCTGGGCATGAGCTTTTTAGATATTTTAGTGGA

Coding sequence (CDS) from alignment at CM002462.1:997466..999354+

>rna4155 ID=rna4155|Name=rna4155|organism=Nannochloropsis gaditana|type=CDS|length=1122bp|location=Sequence derived from alignment at CM002462.1:997466..999354+ (Nannochloropsis gaditana)
ATGCTTAATAGAGGAATTGTTCTTCAGGTAGCGTTCGTGGTGGTCTACTT
TGCGTGGATCGGCACGGCCTTTTACGTACCATCCCCCACGCCAAATTGGT
GGCTTGCTCCCAGTCCGAAGACAAGAGAAAACCCCTCCGCGTGCAAGTCT
GCTCACGTCATTCTGTGCGCATCATATCAAGAGCAACTCGCACGGGCTAG
GGCGGAAAAAGCTGCTCGACaggctggaggcggtgctGTCCCCCAGCCGC
AGTATCAGCCACCCTCAGATGCGTATCGTGCCTCTTACCCCTCTCCGGCC
AAGCAAGCCCAGCAAGCCCAGACTGTTTCATACTCTCCACAGGAAGAACA
GCAACGAAATCGACCACCACATTCGGGGAGTCCGTTGCCTCAGGAAACAA
ACGAAGCAGTCGCGACGTTGCTCAACCTGCTAGGGGAGCGTCTCGGGACG
GGGCAGCCATTGGCACCGGAAAAAGTGCGGGTGTTCACCGCGGCAGCTGA
GGCTGTGATTAAGGAGGCACGCGGCATTGGATACAGCGTGAATGCACCGG
TtggacagcagcaggaggctTATCAGTCACAAGCGCAGACGTTTTATTCA
CCACAGCAGCCGAGGCAGCCGGAACAAACCCAACCGCATCACCAACAAGA
CTACCCAAGACATCAATCCCAGGCCCCATCGTTCACGGCCAGCGGTTTCG
AGCAAGACGAAGATATTCCTTGGGAAATGGGCTCGCGGACGTTGACGGGT
CCGGCGCCTGGTTTCCGGGCAGCTTCGGCCTACCAGCCTGCGGGAGCGGG
TGGTtttgacgaagagggggatgaCTTTGAGACTTACGGGCTGCCTCAAC
CTGTGACAAGGCAAAAGAAAAGTCCATTCATGGAAACGCTGAAAGGCACG
CCGTTTTATGTGGACATTGCAGAGCAACCAGTGAGCTCGGACGAGTATCT
GAGGATTATCCAGAGCCGAATTAAAGCGGCTCAAATGAAACGCCGGCAGG
AGCAAGCTCATACGGGCATTGAGTCCGCAAATCATTACATGGAGGAATTA
AATCGTAAAAAACAAGAACGTTTGCGATTAGAGGCGGAGCAGGCTCGACa
gtggcaggaagggggTCAGTGA

Synonyms

Publications