rna4153, rna4153 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4153
Unique Name	rna4153
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2599
Alignment location	CM002462.1:992592..994268 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100141g9.8382.mrna
Orig protein id	gnl\|cribi\|Naga_100141g9.8382
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:992592..994268 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g9	gene3997	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4153	rna4153-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26535.1	cds4143	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:992592..994268+
coding sequence from alignment at CM002462.1:992592..994268+

mRNA sequence

>rna4153 ID=rna4153|Name=rna4153|organism=Nannochloropsis gaditana|type=mRNA|length=2599bp
CACACAGGGAGAGATCCCGACCAGGCAGTAGGCAATGAGCACGGCGGGGC
AGCCTCTGAAACGGGCCGTGCTCGAACAACTGCTACCGGTAGTGAGCAAT
GACGCCGGCGACCCGAAAACAGCGGCAAGTTTGCAAACATTTGTGTCCGC
CCACATTCCCATGGAGTCGGAACGCGAGCAACGCCGGCGCCGCGACAAGG
TCCTGGAACTCCGCAGTTTGTTTCTCGACTGGATCAAAGCGACCTGCCAT
GCCAAAAACTTGCCAGAGGAAGTGGTGGCGGTGGCTGGGGGTGAGGTTTA
CATTATGGGTAGCTACAAATTAAATGTGCATGAACCTGGCGCAGATATTG
ACCTGTGCTGCGTCGTTCCTGTCCACATATCACGGGAGGACTTCTTCACA
TCCTTCCATGACACCCTCCGGCAGCATCCGAAGGTCAAGGACCTGGCTTC
TGCTGCCAGCGCCCACGTCCCTATCATGAGCTTTGCTTTGGACGGCGTGG
ATTTCGACGTGCTATTCGCCCAGCTCCCCCTGACCTCGGTCAAGGCCGGG
ATGAGCGTGGACGAGGACCTGATCCTTCGTGGGGTCGACGCCAAGACCTA
CCTCTCCCTGAATGGCCCCAGGACCACCAACATGATCACGCGCCTCGTGC
CCGCCTCCGCCCAAGCCTCCTTCCTCACCGTGCTCCGGGTCGTCCGAATA
TGGGCCAAGAACCGGGGGCTGTACGCGAACAAGATGGGCTACTTGGGGGG
CGTCAATTTCAACATTCTGGTGGCGATGATCTGTCAGATGTACCCCCGAG
CGAACCCCGCCCTGATGCTCCACCGTTTCTTCTTGGTGTTGGGGGAACGC
TGGAAGTGGCCGACGCCCGTCCGTCTCTGCAAAAATTTCGACGCCGGCCT
GGGTTTCCCTGTGTGGGAACAAGGCGGATCCTCGCGGCGGGAGCTGATGC
CGATCATCACGCCGGCGTACCCAGCCGGGAACAGTGCCTATAACGTCTCG
GCGCAAACCTTGTCGGTGATGAAAACGGAGTTTGCCCGGGGAAAGAAAGT
GCTGGACAAGGCGTTGGCCATGGCATCCTTGACGCCAGGCGACGAGGTCG
GGAACAACGCGGCGCAAGCTGCCTGGCGGGAACTGATTGAACCGTCGGAT
TTCTTCATCCGTTACAACCGTTACTTGGCCGTTGACATGTGGGCGTCGAC
GGCCGAAGGGGAAGCCGCGTGGTTCGGCTTGGTCGAGTCGCGCCTGCGCC
TGCTGGTGGATATCCTGGATCGGGAGCCTCGGGAGATCTACGGCCTGGGG
CCGATTTTCAAATCCGTGCACCTCTTTCCCCGCGCCTTTCCCCCCTGCCA
CAGGGGGGGCCACGACGGCGGGTCAGAGGCCTGGCATGCCGCCCAGTGTT
TTTACATCGGCTTGTCCTTCGACAAGGAAGAGATGGAGCGGCGCAAGGTG
GGGAAAGAGGTGTTTGTGGGCGAGTTTATACGGAAATGGCGATTTGCCGT
GGAGACCCCGCCCCGGGGAGGGCAGATGAGAAGCATGCGACCTCGGGGAT
GCGACGTCCTGGTCAGCGAGGTAAAATGGCGCGAACTCCCCGCCAATGTC
TTTGAGAGCCTGGGGGGCGAGAAATTGGCGCGGGAGAGGAGGAGGAAAGA
GCGGGGGAAAGGGAAGGAGGGCCGGAAGAAGGGGCAGAAACGGGCGCGGG
AGGAGGAGGGGGAGGAGGAGGGGGAGGAGGAGGGCAAGGCAGGGATGGAA
AAAAGGAGAGGGGAGGAGGGCGAGGCCGGGGAGGGGGAGGAGGATGAAAC
CGAAGGGTTCACTCCTCTGCACATGGCGGCGTACACGGGGGAGTTGGAGT
CGGTCAAGGCGTTGACGAGGGAGGAAGAGGAGGGGGGAAAGGAGGAAGGG
AGGAAGGGAGGGAGGGAGGGTTTGGTGGCGGTGAAAGGGGTGGATGCCTT
GGATGCACAGGGGCGGACGCCGGCGCAGGTGGCCCGCGAGAGAGGCTTCG
ACGAAGTAGCGATGTATCTGGAAGGATTGATGGCGGCGAAGGGGGAGGGA
GGGCGGGAAGGAGGGGCAGGGAGCGGGGCGGAGGAGGAGAGAAGGGTGGT
CCCAACCCAATTCTTGCCCCCCTTGGACGGCAACGCCGAGTACGATGACG
CGGACGACGAGGTGTTGGGCGCTGCGGAAGCAGCCATGGAACAGGCGATG
GAAGCGGAAGAAGGGGGGGAGGGGGAGGAGAAGCGGCAAGAGGGGGAAGA
GGAGGAGGAAGCTAGCCGGAAGAAGGCAGCATTGATGAGCCTGCAGCTAG
TCATGAAGGAGGAAGAGTTGAAGTTGGATCCAGTCATCCCCCCTTGGCGG
AAGCGAAGCTTGGTCCTGTCGAGTGGTGGTGGGGGGGAAAGGACTCGGGC
CCTGATTCGGACACCGGTGGTGATGGATTTGACCTTGGAGGAGGGCGAAG
GGAAGGTGTGAGGGAAGGCGGGAAGGAGGGGAAGGTGTCAGGGGGGGCGG
AGACGTGCCATGCGGTCAGAAGAGCGCACCTCGTCGTACAAATGTGACAC
ATAAGTCAACATTACACGGAAAAAGAAAACAAAAGAAAACCACGAAAGA

protein sequence of rna4153

>rna4153-protein ID=rna4153-protein|Name=rna4153|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MGPRQSTHIYRHPTNTTLEQDATIGGVGGSVAGAISGIGYLFVNQVGLRS
SITLLGFAVVGGAIVGAIVCIAGTLAVKSLAWLYSRLRKRARQNLAVQLA
PFTTEAAASEVHNRRANSREETQPTCKKSGATLTSRELSRLEQVLETSQA
ERGRLLEDLRTYDSALTQLEQQLSFARESSRGNANDQYVRSHCSDTVSQR
GPSHAAETLPLELEHFQAQPVHITFRLSDTVSECMISNDNGISSEACIVS
NEEGRRPSCLSAVHFTG

mRNA from alignment at CM002462.1:992592..994268+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4153 ID=rna4153|Name=rna4153|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp|location=Sequence derived from alignment at CM002462.1:992592..994268+ (Nannochloropsis gaditana)
TTTCTGAAAAGTGAACATTTTATAGCCAGTGTACCACCTTTGACTCCTTT
TTACTGGCTCTAATATTTTTTACTGGTTTTCTCCGTCAATTACGCAGGTC
CGTATCACTTGCAGTGCAACCTTCGaggtcttccccctccttggaaGGGA
CGCTGGAAGACATAGCATGGGACCGAGGCAAAGCACCCATATATATCGGC
ATCCAACAAATACCACACTCGAGCAGGACGCAACCATCGGTGGAGTTGGA
GGATCCGTGGCGGGGGCAATTTCCGGGATCGGGTACCTCTTTGTTAATCA
GGTAGGGCTTCGTTCAAGCATCACGTTGCTTGGCTTCGCCGTCGTTGGAG
GGGCCATCGTGGGTGCCATCGTCTGTATTGCAGGAACTCTGGCTGTGAAA
TCTCTTGCCTGGCTCTATTCGAGGCTCCGGAAGCGCGCACGCCAGAACTT
AGCAGTCCAACTGGCACCCTTCACGACCGAAGCTGCGGCGTCCGAAGTGC
ACAACAGAAGAGCGAATAGTCGAGAAGAAACTCAACCCACGTGTAAAAAG
TCTGGAGCAACATTGACGAGTAGAGAGCTCAGCCGTTTGGAACAGGTGTT
GGAAACCTCTCAGGCAGAACGGGGACGCCTACTGGAAGATCTGCGTACGT
ACGATTCCGCGTTAACACAATTAGAGCAGCAACTAAGCTTTGCCAGAGAG
TCGTCTCGAGGCAACGCAAACGATCAATATGTAAGATCACATTGTTCAGA
TACTGTGTCTCAACGAGGACCAAGTCATGCTGCAGAGACCTTACCGCTCG
AACTCGAACACTTTCAAGCTCAGCCAGTACACATCACTTTTCGACTTTCC
GATACGGTTTCTGAATGTATGATTTCTAACGACAATGGCATTTCTTCCGA
GGCTTGTATTGTCTCAaatgaagaaggaaggaggccttCTTGCTTGTCTG
CCGTTCACTTCACAGGCTAGTGTTGCGAATCAATAGAAAAGACGTCGTTC
TGTAGAGTGAAGGCGCCTTAAGTGCTTGGAATGACCCTTCCACTTTCTTT
TAGAAACATGTCAGTTGACGAGTATGCTTCAGGCGCAGAGCGTACAAGGG
CTGTAAGAGGTGAGGTGCAGGCCAAGAAACATCCCACAAGACGATCAGGC
GAGACACGACATTGAATAGCAAAACTTAATTGACTGATTTATAAGTTTCA
AGGCATTCTTGCGAAGTGGAATAATCATAAATCATACTTGATCAAATTTT
CTCGTTTGCGCGGAAATATTGCCGCAAATAAGCATACAAAAAAGTATGCT
TGTCTTATGCAACCTACGAGGGTGGGCCGTGGTAGAAAGTTGGACCAAGT
GACCCGACAGCCCATTCGTCACATGATTTTGCGCAGAATAGCATTATTTT
CACATTTATATTTCAATTGCGTGCGAAGTCACTTGTCTCAAAGTTAGACA
GACGGCCCATCTTTTGgttggggggaaggcgcgagATACGACTCGGTGGA
ATCTTGCTGTTGCTCGGCAAGTACCTCTGAAACTATGTTGTTCAAGTCGA
GAAAATGCCGCAGGCAAAGAATTGATAAAACGTATACCTTTCACGCGAAA
GGGCCGTGCTGAACTTTTGAATCAAGTGACACCCGACAGCCAAACGAAGG
TCACATAAATGAACGCGCTAAGAGTAC

Coding sequence (CDS) from alignment at CM002462.1:992592..994268+

>rna4153 ID=rna4153|Name=rna4153|organism=Nannochloropsis gaditana|type=CDS|length=804bp|location=Sequence derived from alignment at CM002462.1:992592..994268+ (Nannochloropsis gaditana)
ATGGGACCGAGGCAAAGCACCCATATATATCGGCATCCAACAAATACCAC
ACTCGAGCAGGACGCAACCATCGGTGGAGTTGGAGGATCCGTGGCGGGGG
CAATTTCCGGGATCGGGTACCTCTTTGTTAATCAGGTAGGGCTTCGTTCA
AGCATCACGTTGCTTGGCTTCGCCGTCGTTGGAGGGGCCATCGTGGGTGC
CATCGTCTGTATTGCAGGAACTCTGGCTGTGAAATCTCTTGCCTGGCTCT
ATTCGAGGCTCCGGAAGCGCGCACGCCAGAACTTAGCAGTCCAACTGGCA
CCCTTCACGACCGAAGCTGCGGCGTCCGAAGTGCACAACAGAAGAGCGAA
TAGTCGAGAAGAAACTCAACCCACGTGTAAAAAGTCTGGAGCAACATTGA
CGAGTAGAGAGCTCAGCCGTTTGGAACAGGTGTTGGAAACCTCTCAGGCA
GAACGGGGACGCCTACTGGAAGATCTGCGTACGTACGATTCCGCGTTAAC
ACAATTAGAGCAGCAACTAAGCTTTGCCAGAGAGTCGTCTCGAGGCAACG
CAAACGATCAATATGTAAGATCACATTGTTCAGATACTGTGTCTCAACGA
GGACCAAGTCATGCTGCAGAGACCTTACCGCTCGAACTCGAACACTTTCA
AGCTCAGCCAGTACACATCACTTTTCGACTTTCCGATACGGTTTCTGAAT
GTATGATTTCTAACGACAATGGCATTTCTTCCGAGGCTTGTATTGTCTCA
aatgaagaaggaaggaggccttCTTGCTTGTCTGCCGTTCACTTCACAGG
CTAG

Synonyms

Publications