rna4145, rna4145 (mRNA) Nannochloropsis gaditana

Overview
Namerna4145
Unique Namerna4145
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1497
Alignment locationCM002462.1:975679..976112 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102073g1.7651.mrna
Orig protein idgnl|cribi|Naga_102073g1.7651
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:975679..976112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102073g1gene3989Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26538.1cds4135Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4145rna4145-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4145 ID=rna4145|Name=rna4145|organism=Nannochloropsis gaditana|type=mRNA|length=1497bp
CATGTACAACCCATGTCCAGGACACGCCCAAAACCCGTATCTCTTTGCAT
CCACCCCACAAAAGGCAGAAAAATGAAGGCATGGGGCATGCGTTTGGGAC
CGTTCGGACTGTGCATGGTCGCAGTAATCGTCTCTTTTTGGGCGCCTTCC
TACTTCGTCCAATCCCAACCCATCCCTTACCACCCTTCCACATGACGCCT
GCATGTGATCGTCTATCGACACATCGCAGTGCGTCCTTACCGTGCCCCTC
CAGGGCGCATTGTCCCGCCGCGGCTTTTCCTCGTTTTGGGCCCCGCCCTC
GAACCCGCCTCTTCGCCTTCCCCTCCCTCGTGATTCAGCCCACTGCCTTC
AAGACTTCCGTCAACGCCGTCCTCCGCCTCGTTGCCTCCTGCGGTCTGGG
CCTAGGGGCCGCCTCCCACGGTCTCCTTGACCAGGCTTCCCTCTCCACGC
TTTCGCGCCTTATTTTCGCTTTTTTCCAACCCGCCCTCCTCTTCACCAAC
GTGGCGACAACCTTGGCCACCCCTTCCTCGTACGGTTCCTCCCTCCTCGT
GCTCCCCGCCTTCGCGGTCCTGCAAATCCTCTTCGGTTTCCTCTACGGGA
AGGGTATGGCCGCCTCCCTCCGCCTTGACCCGGCCTCGGACGCGGGGAAA
GAACTCGCCGTCTGCTCCGCCTTTGCCAACTCCGGGCCGTTGCCCCTCCT
TTTCGCCGACGCCTTCTTCCGCCTCCACCCGACCGATCCTACCCTCTACC
CACGCGCTGTTGCCTACATATCTTTCTACCTGGTGGCTTGGTCGCCGCTC
TTTTGGACGCTGGGCAGCACCATCCTCGGCTCCAGCACCTCCCAACCGGC
CTATGCCAAGTCCCCTCCCTCCCCATCACCTTCTCCCACCCTCCCCTCCC
GCCTCCTCCACCATCCCCTTCTCCGAAAGACCCTCTCTCCTCCCACCCTG
GGCTGCCTTTTGGGCGCCTTGGTGGGTAGTACCCCTTTTCTTCGCGCCAT
TTTTTTCGGGCCGACCGCCCCCTTGGCGGCGCTTTTTGACGCCCTTCGCA
CCATGGGCTCCGCCTATCTCCCCACCGTCCTCCTTGTCCTCGCTGGTTCC
CTCGCCCAGGGATTCAAAAGTTTGAATCTGAAAGATCCGGCCCTCCTCTC
CCGGACGGGCGCCATCTGCTTCGCGCGCTTTTTCCTCATGCCGGCCACGG
CCTTCCTTCTCCTCACCCTGGGCCGCGCCTTTTCCCTCATCCCGTCCTCC
GATCCCCTCCTTGCCTTCGTCCTCCTCCTTCAAGCCTGCATGCCCTGCGC
CCAGAACACGGTCGTCATCCTTCAACTCCAACAGCGGCCCGCGGCCGCCG
CCTCTATGGCCACGCTAGTCTCCCTCGTTTATCTTGCGGCCGTCGTGCCC
ATGGGCCTCTTGCTTTCCTTCGTCTTGCAGTACGTGGGGCTGTAAAAGAG
GCAGACAAGGCCATTTTCCATCGCGGTGGGGAGGAGGTTGCTTTCCC
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protein sequence of rna4145

>rna4145-protein ID=rna4145-protein|Name=rna4145|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
GKEGQVGMKGGEDGAKKRSWKRRWKRRKREDEGGEEEEEEEEEGGEEEEG
EEDPWQWDDGVPDHWMKSGKGRIEGGREGGEENGLLETLLASLLGVEEVE
EGREGGMVWEMVSRKLTKLLTFCALLYAALSLREIMS
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mRNA from alignment at CM002462.1:975679..976112-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4145 ID=rna4145|Name=rna4145|organism=Nannochloropsis gaditana|type=mRNA|length=434bp|location=Sequence derived from alignment at CM002462.1:975679..976112- (Nannochloropsis gaditana)
GGGAAGGAGGGTCAGGTAGGGATGAAGGGGGGAGAAGACGGGGCCAAGAA
GAGGAGCTGGAAGAGGCGATGGAAAAGGAGGAAGAGGGAGGACGAGGGGG
GCGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGGGGAGGAGGAGGAAGGG
GAGGAGGATCCTTGGCAGTGGGATGATGGTGTTCCTGACCATTGGATGAA
GTCGGGGAAAGGGAGGATTGAGGGAGGGAGGGAAGGAGGGGAGGAAAACG
GGTTGCTCGAGACTTTGCTTGCCAGCCTGCTAGGGGTGGAGGAGGTGGAG
GAAGGGAGGGAGGGAGGGATGGTGTGGGAGATGGTATCGAGAAAATTGAC
CAAGCTCCTCACGTTTTGTGCCCTCCTGTATGCCGCGCTATCCTTGCGTG
AGATCATGTCCTGAGAAGGGAGGGAGGGCGGGGC
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Coding sequence (CDS) from alignment at CM002462.1:975679..976112-

>rna4145 ID=rna4145|Name=rna4145|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002462.1:975679..976112- (Nannochloropsis gaditana)
GGGAAGGAGGGTCAGGTAGGGATGAAGGGGGGAGAAGACGGGGCCAAGAA
GAGGAGCTGGAAGAGGCGATGGAAAAGGAGGAAGAGGGAGGACGAGGGGG
GCGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGGGGAGGAGGAGGAAGGG
GAGGAGGATCCTTGGCAGTGGGATGATGGTGTTCCTGACCATTGGATGAA
GTCGGGGAAAGGGAGGATTGAGGGAGGGAGGGAAGGAGGGGAGGAAAACG
GGTTGCTCGAGACTTTGCTTGCCAGCCTGCTAGGGGTGGAGGAGGTGGAG
GAAGGGAGGGAGGGAGGGATGGTGTGGGAGATGGTATCGAGAAAATTGAC
CAAGCTCCTCACGTTTTGTGCCCTCCTGTATGCCGCGCTATCCTTGCGTG
AGATCATGTCCTGA
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Synonyms
Publications