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Properties
| Property Name | Value |
|---|
| Product | membrane transporter |
| Orig transcript id | gnl|cribi|Naga_101407g1.3604.mrna |
| Orig protein id | gnl|cribi|Naga_101407g1.3604 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:973106..974808 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4144 ID=rna4144|Name=rna4144|organism=Nannochloropsis gaditana|type=mRNA|length=1510bp
CATGTACAACCCATGTCCAGGACACGCCCAAAACCCGTATCTCTTTGCAT
CCACCCCACAAAAGGCAGAAAAATGAAGGCATGGGGCATGCGTTTGGGAC
CGTTCGGACTGTGCATGGTCGCAGTAATCGTCTCTTTTTGGGTAAGAGAC
ACAGGCGCCTTCCTACTTCGTCCAATCCCAACCCATCCCTTACCACCCTT
CCACATGACGCCTGCATGTGATCGTCTATCGACACATCGCAGTGCGTCCT
TACCGTGCCCCTCCAGGGCGCATTGTCCCGCCGCGGCTTTTCCTCGTTTT
GGGCCCCGCCCTCGAACCCGCCTCTTCGCCTTCCCCTCCCTCGTGATTCA
GCCCACTGCCTTCAAGACTTCCGTCAACGCCGTCCTCCGCCTCGTTGCCT
CCTGCGGTCTGGGCCTAGGGGCCGCCTCCCACGGTCTCCTTGACCAGGCT
TCCCTCTCCACGCTTTCGCGCCTTATTTTCGCTTTTTTCCAACCCGCCCT
CCTCTTCACCAACGTGGCGACAACCTTGGCCACCCCTTCCTCGTACGGTT
CCTCCCTCCTCGTGCTCCCCGCCTTCGCGGTCCTGCAAATCCTCTTCGGT
TTCCTCTACGGGAAGGGTATGGCCGCCTCCCTCCGCCTTGACCCGGCCTC
GGACGCGGGGAAAGAACTCGCCGTCTGCTCCGCCTTTGCCAACTCCGGGC
CGTTGCCCCTCCTTTTCGCCGACGCCTTCTTCCGCCTCCACCCGACCGAT
CCTACCCTCTACCCACGCGCTGTTGCCTACATATCTTTCTACCTGGTGGC
TTGGTCGCCGCTCTTTTGGACGCTGGGCAGCACCATCCTCGGCTCCAGCA
CCTCCCAACCGGCCTATGCCAAGTCCCCTCCCTCCCCATCACCTTCTCCC
ACCCTCCCCTCCCGCCTCCTCCACCATCCCCTTCTCCGAAAGACCCTCTC
TCCTCCCACCCTGGGCTGCCTTTTGGGCGCCTTGGTGGGTAGTACCCCTT
TTCTTCGCGCCATTTTTTTCGGGCCGACCGCCCCCTTGGCGGCGCTTTTT
GACGCCCTTCGCACCATGGGCTCCGCCTATCTCCCCACCGTCCTCCTTGT
CCTCGCTGGTTCCCTCGCCCAGGGATTCAAAAGTTTGAATCTGAAAGATC
CGGCCCTCCTCTCCCGGACGGGCGCCATCTGCTTCGCGCGCTTTTTCCTC
ATGCCGGCCACGGCCTTCCTTCTCCTCACCCTGGGCCGCGCCTTTTCCCT
CATCCCGTCCTCCGATCCCCTCCTTGCCTTCGTCCTCCTCCTTCAAGCCT
GCATGCCCTGCGCCCAGAACACGGTCGTCATCCTTCAACTCCAACAGCGG
CCCGCGGCCGCCGCCTCTATGGCCACGCTAGTCTCCCTCGTTTATCTTGC
GGCCGTCGTGCCCATGGGCCTCTTGCTTTCCTTCGTCTTGCAGTACGTGG
GGCTGTAAAAGAGGCAGACAAGGCCATTTTCCATCGCGGTGGGGAGGAGG
TTGCTTTCCC back to topprotein sequence of rna4144 >rna4144-protein ID=rna4144-protein|Name=rna4144|organism=Nannochloropsis gaditana|type=polypeptide|length=454bp
MGHAFGTVRTVHGRSNRLFLGAFLLRPIPTHPLPPFHMTPACDRLSTHRS
ASLPCPSRAHCPAAAFPRFGPRPRTRLFAFPSLVIQPTAFKTSVNAVLRL
VASCGLGLGAASHGLLDQASLSTLSRLIFAFFQPALLFTNVATTLATPSS
YGSSLLVLPAFAVLQILFGFLYGKGMAASLRLDPASDAGKELAVCSAFAN
SGPLPLLFADAFFRLHPTDPTLYPRAVAYISFYLVAWSPLFWTLGSTILG
SSTSQPAYAKSPPSPSPSPTLPSRLLHHPLLRKTLSPPTLGCLLGALVGS
TPFLRAIFFGPTAPLAALFDALRTMGSAYLPTVLLVLAGSLAQGFKSLNL
KDPALLSRTGAICFARFFLMPATAFLLLTLGRAFSLIPSSDPLLAFVLLL
QACMPCAQNTVVILQLQQRPAAAASMATLVSLVYLAAVVPMGLLLSFVLQ
YVGL back to topmRNA from alignment at CM002462.1:973106..974808+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4144 ID=rna4144|Name=rna4144|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp|location=Sequence derived from alignment at CM002462.1:973106..974808+ (Nannochloropsis gaditana)
CATGTACAACCCATGTCCAGGACACGCCCAAAACCCGTATCTCTTTGCAT
CCACCCCACAAAAGGCAGAAAAATGAAGGCATGGGGCATGCGTTTGGGAC
CGTTCGGACTGTGCATGGTCGCAGTAATCGTCTCTTTTTGGGTAAGAGAC
ACAGGTAAAtagacgaggacgagcctGGTGGCGGGGAATTTTAAGGCCAG
GCCGAACAACTATTTTTGTATAGACACAGCCTGCCAAAAATCCTTCTTAG
CGTCTTTCGTAGTATCAAAAATCAGGTTTAGTGTCTTATTGCATTCACGT
CTTTGGCCCCGCCTGAAACGACCTGGTCGCCGTTCACTTTCCCACAGGCG
CCTTCCTACTTCGTCCAATCCCAACCCATCCCTTACCACCCTTCCACATG
ACGCCTGCATGTGATCGTCTATCGACACATCGCAGTGCGTCCTTACCGTG
CCCCTCCAGGGCGCATTGTCCCGCCGCGGCTTTTCCTCGTTttgggcccc
gccctcgaacccgcctcttcgccttcccctccctcgtgatTCAGCCCACT
GCCTTCAAGACTTCCGTCAacgccgtcctccgcctcgttGCCTCCTGCGG
TCTGGGCCTAGGGGCCGCCTCCCACGGTCTCCTTGACCaggcttccctct
ccacgcttTCGCGCCTTATTTTCGCTTTTTTCcaacccgccctcctcttc
accaaCGTGGCGACAACCTTggccaccccttcctcgtacggttcctccct
cctcgtgctccccgccttcgcGGTCCTGCAAATCCTCTTCGGTTTCCTCT
ACGGGAAGGGtatggccgcctccctccgccttgacCCGGCCTCGGACGCG
GGGAAAGAACTCGCCGTCTGCTCCGCCTTTGCCAACTCCGGGCCgttgcc
cctccttttcgccgacgccttcttccgcctccacccgACCGATCCTACCC
TCTACCCACGCGCTGTTGCCTACATATCTTTCTACCTGGTGGCTTGGTCG
CCGCTCTTTTGGACGCTGGGCAGCACCATCCTCggctccagcacctccca
ACCGGCCTATGCCaagtcccctccctccccatcaccttctcccaccctcc
cctcccgcctcctccaccatccccttCTCCGAAAgaccctctctcctccc
accctggGCTGCCTTTTGGGCGCCTTGGTGGGTAGTACCCCTTttcttcg
cgccatttttttcGGGCCGACCGCCCCCTTGGCGGCGCTTTTTGACGCCC
TTCGCACCATGGGCTCCGCCTATCtccccaccgtcctccttgtcctcgct
gGTTCCCTCGCCCAGGGATTCAAAAGTTTGAATCTGAAAGATccggccct
cctctcccggacGGGCGCCATCTGcttcgcgcgctttttcctcatgccgg
ccacggccttccttctcctcaccctGGGCcgcgccttttccctcatcccg
tcctccgatcccctccttgccttcgtcctcctccttcaagcctGCATGCC
CTGCGCCCAGAACACGGTCGTCATCCTTCAACTCCAACAGCGgcccgcgg
ccgccgcctctaTGGCCACGCTAGTCTCCCTCGTTTATCTTGCGGCCGTC
GTGCCCATGGGCCTCTTGCTTTCCTTCGTCTTGCAGTACGTGGGGCTGTA
AAAGAGGCAGACAAGGCCATTTTCCATcgcggtggggaggaggttgcttT
CCC back to topCoding sequence (CDS) from alignment at CM002462.1:973106..974808+ >rna4144 ID=rna4144|Name=rna4144|organism=Nannochloropsis gaditana|type=CDS|length=2730bp|location=Sequence derived from alignment at CM002462.1:973106..974808+ (Nannochloropsis gaditana)
ATGGGGCATGCGTTTGGGACCGTTCGGACTGTGCATGGTCGCAGTAATCG
TCTCTTTTTGGGCGCCTTCCTACTTCGTCCAATCCCAACCCATCCCTTAC
CACCCTTCCACATGACGCCTGCATGTGATCGTCTATCGACACATCGCAGT
GCGTCCTTACCGTGCCCCTCCAGGGCGCATTGTCCCGCCGCGGCTTTTCC
TCGTTttgggccccgccctcgaacccgcctcttcgccttcccctccctcg
tgatTCAGCCCACTGCCTTCAAGACTTCCGTCAacgccgtcctccgcctc
gttGCCTCCTGCGGTCTGGGCCTAGGGGCCGCCTCCCACGGTCTCCTTGA
CCaggcttccctctccacgcttTCGCGCCTTATTTTCGCTTTTTTCcaac
ccgccctcctcttcaccaaCGTGGCGACAACCTTggccaccccttcctcg
tacggttcctccctcctcgtgctccccgccttcgcGGTCCTGCAAATCCT
CTTCGGTTTCCTCTACGGGAAGGGtatggccgcctccctccgccttgacC
CGGCCTCGGACGCGGGGAAAGAACTCGCCGTCTGCTCCGCCTTTGCCAAC
TCCGGGCCgttgcccctccttttcgccgacgccttcttccgcctccaccc
gACCGATCCTACCCTCTACCCACGCGCTGTTGCCTACATATCTTTCTACC
TGGTGGCTTGGTCGCCGCTCTTTTGGACGCTGGGCAGCACCATCCTCggc
tccagcacctcccaACCGGCCTATGCCaagtcccctccctccccatcacc
ttctcccaccctcccctcccgcctcctccaccatccccttCTCCGAAAga
ccctctctcctcccaccctggGCTGCCTTTTGGGCGCCTTGGTGGGTAGT
ACCCCTTttcttcgcgccatttttttcGGGCCGACCGCCCCCTTGGCGGC
GCTTTTTGACGCCCTTCGCACCATGGGCTCCGCCTATCtccccaccgtcc
tccttgtcctcgctgGTTCCCTCGCCCAGGGATTCAAAAGTTTGAATCTG
AAAGATccggccctcctctcccggacGGGCGCCATCTGcttcgcgcgctt
tttcctcatgccggccacggccttccttctcctcaccctGGGCcgcgcct
tttccctcatcccgtcctccgatcccctccttgccttcgtcctcctcctt
caagcctGCATGCCCTGCGCCCAGAACACGGTCGTCATCCTTCAACTCCA
ACAGCGgcccgcggccgccgcctctaTGGCCACGCTAGTCTCCCTCGTTT
ATCTTGCGGCCGTCGTGCCCATGGGCCTCTTGCTTTCCTTCGTCTTGCAG
TACGTGGGGCTGTAAATGGGGCATGCGTTTGGGACCGTTCGGACTGTGCA
TGGTCGCAGTAATCGTCTCTTTTTGGGCGCCTTCCTACTTCGTCCAATCC
CAACCCATCCCTTACCACCCTTCCACATGACGCCTGCATGTGATCGTCTA
TCGACACATCGCAGTGCGTCCTTACCGTGCCCCTCCAGGGCGCATTGTCC
CGCCGCGGCTTTTCCTCGTTttgggccccgccctcgaacccgcctcttcg
ccttcccctccctcgtgatTCAGCCCACTGCCTTCAAGACTTCCGTCAac
gccgtcctccgcctcgttGCCTCCTGCGGTCTGGGCCTAGGGGCCGCCTC
CCACGGTCTCCTTGACCaggcttccctctccacgcttTCGCGCCTTATTT
TCGCTTTTTTCcaacccgccctcctcttcaccaaCGTGGCGACAACCTTg
gccaccccttcctcgtacggttcctccctcctcgtgctccccgccttcgc
GGTCCTGCAAATCCTCTTCGGTTTCCTCTACGGGAAGGGtatggccgcct
ccctccgccttgacCCGGCCTCGGACGCGGGGAAAGAACTCGCCGTCTGC
TCCGCCTTTGCCAACTCCGGGCCgttgcccctccttttcgccgacgcctt
cttccgcctccacccgACCGATCCTACCCTCTACCCACGCGCTGTTGCCT
ACATATCTTTCTACCTGGTGGCTTGGTCGCCGCTCTTTTGGACGCTGGGC
AGCACCATCCTCggctccagcacctcccaACCGGCCTATGCCaagtcccc
tccctccccatcaccttctcccaccctcccctcccgcctcctccaccatc
cccttCTCCGAAAgaccctctctcctcccaccctggGCTGCCTTTTGGGC
GCCTTGGTGGGTAGTACCCCTTttcttcgcgccatttttttcGGGCCGAC
CGCCCCCTTGGCGGCGCTTTTTGACGCCCTTCGCACCATGGGCTCCGCCT
ATCtccccaccgtcctccttgtcctcgctgGTTCCCTCGCCCAGGGATTC
AAAAGTTTGAATCTGAAAGATccggccctcctctcccggacGGGCGCCAT
CTGcttcgcgcgctttttcctcatgccggccacggccttccttctcctca
ccctGGGCcgcgccttttccctcatcccgtcctccgatcccctccttgcc
ttcgtcctcctccttcaagcctGCATGCCCTGCGCCCAGAACACGGTCGT
CATCCTTCAACTCCAACAGCGgcccgcggccgccgcctctaTGGCCACGC
TAGTCTCCCTCGTTTATCTTGCGGCCGTCGTGCCCATGGGCCTCTTGCTT
TCCTTCGTCTTGCAGTACGTGGGGCTGTAA back to top
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