rna414, rna414 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna414
Unique Name	rna414
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2205
Alignment location	CM002455.1:1026583..1028928 +

Link to JBrowse

Properties


Property Name	Value
Product	methyltransferase-like protein 13 isoform 1
Orig transcript id	gnl\|cribi\|Naga_100003g71.1790.mrna
Orig protein id	gnl\|cribi\|Naga_100003g71.1790
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1026583..1028928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g71	gene398	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna414	rna414-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30273.1	cds414	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1026583..1028928+
coding sequence from alignment at CM002455.1:1026583..1028928+

mRNA sequence

>rna414 ID=rna414|Name=rna414|organism=Nannochloropsis gaditana|type=mRNA|length=2205bp
TGACGGCGACCGGCTCGTCCTCCGTCGATCAATCTGAAATGCCGCGCGCT
ATGGGTGTTGTCTTTCCATATTTCCAAGCCTCCTAGGGGTAGCGGCCTTT
CAGTGGGGACATACCAGCTTCTCATCCGTCGGCATCCACGTGTTACAGAG
CCTCCAACTCCTCATCACTTACTTACTGCTGGTGGCGGGAAAGTCTTACT
GTGAAAGAGGGCATCACGACATTGACAATGCAGAGGAACGGGCGCTCACT
CTTATATCCCGCCTTCCTGACGTTGGGAGGAGTGTGCCTTGCCAGCATTG
TTGCGCTTCCTTTGGGGGTGAAAGCCCGTGTCGCGAAGGGGAAAGTAAAA
AGTAAAAGAGGCATGGATCCTTTTACTAGATTCTGGATGGAATGGATGAC
GGAGTATCGCGGCGTGGTCATGGTCATGGTCGTCCTCCCTCTGTCATTCG
CGTTCGAGCAGTACTTCGAGGTGCGGGACTGGTTCTACCGCACGTTCCAG
GTCGCGCCCAGACTCCACGACGCCCGGGTCCGGCACGTGCAGAAGCAAGT
GAGGCGCTGGAATGCTGCAGGATTGCGAGGCAAGAGGACCATGTGCACGG
CTCGGGCGTCGTGGCTGACCATGTCGACGCGCACCGCCACCTTCAAAGAG
GACTGCAGCAAAATCGAGTGCTGCCTCCGCGACATCCTGCGCGTGGATGT
GGAGAAGGGGTTCGTTCGCACCGAGCCGCTGGTGGACATGCGCTATATGA
CCCGCACCTTGGTTCCCCTGGGGTACCAGCTCGCCATCCAGGTGGAGATG
GAGTCCCTGACGATCGGAGGGCTCTGCATGGGGCTAGGCATGGAGACGAA
CTCGCACCGCTTCGGGCTCTTGCAGGAGACCGTCCTCGCCTTCGAAATCG
TCACCTCCCACGGAGAGCTTCTCCGCGTCACGCGCGAGAGCAACCCTGAC
CTTTTCTACGCCTTGCCCTGGTCGCATGGGACCTTGGGCTTCCTGGTGGC
GGTGGAGCTGAAGATCATCCCGATAAAGCCCTACGTCCACGTGCGCTACC
TGCCGTGCCACACCCAAGAGGAGCTTTGCTCACAGATGAAGGCTTTGAGC
GAGGCGAAGAACCCCCCAGAGTTCTTGGAGGCGACGGTGTATAGCAAGGA
GACGAGCGTGATCCAGGTCGGGGAGTTTGCGGACGTGGACAGCCCCGAGA
AGCGGAGGAAAGTGAACGGCGTCAACCATTTTTGGAAGCCCTGGTACTAC
TTGCACGTGGAGGAAGCGTTGACGAACAAGGGCCCCTTCGACGAGTATAT
CCCTGTCCGACACTACCACCACCGTTTCACTCGCTCCATCTTCTGGGAGC
TGCGCGACTTGATCCCCTTCGGAAACCATCCCCTTTACCGGTGCCTGCTG
GGCTGGCTGGGAGCGCCCAAGGTCTCCTTTATCAAATTGACCATGACCCC
TCAGATCAGGCGAGAAGTGGTCTACAAGCACGTGGTTCAAGACATCATCA
TCCCCGTGGACGAAATGGCACATTCCATCAACCTGTTCCACGAGTGGTTC
GAGATCTATCCTCTTCTTATTTTCCCAATCGCTATCTTCGACCACGGGCC
TGCTCATGAAGGTTTCCTTCGCAATCCCACAAAGAAGATTCCTGGCAAGA
ACTGCCAAATGTTCTTCGACTTGGGTGTCTATGGAGTTCCGGACAAAGTC
CGTCGAAAAGAAGCTTGGGATGCCAAGGCCCGCATTAGGGCCATGGAGAA
GTACACACGGGATGTAGGAGGTTACCAATGCCTGTACGCAGACACTTTTA
TGGACGAGAAGGAGTTCAGGCTCATGTTCAACCACGCACTCTATGACAAG
ATGCGTGAAAAGTACGATTGCGAGGGCGCTTTCCCCTCTATCTACCAGAA
GATTCGCCCGGAAGCAGGTGTCCTGGAAGACGAGGGAGATGCCAACGAGA
AAACGGCTGTGTAAGTAGTCGGTCGAGCCTTAAGAGATCTGCGAGGGGCG
TAGGAAGGACCTCCGTATTAAGAAAGTGGATACAAGCCTTTCTCTCTGGG
AGAGAAGGAATAAGTATAGAGCTGGAACGTTGAAGGAGGAATTGAAGGAG
GAAGGAAAAATAGTGAGCAAATGAGCAAATGCCTGATTTATAGGAGGCCA
AAGGCTCACATTAAGCGACAGACAAAAAAAACGAATTGATGCTATCGCGG
TTTTA

protein sequence of rna414

>rna414-protein ID=rna414-protein|Name=rna414|organism=Nannochloropsis gaditana|type=polypeptide|length=781bp
MPPPVSASVLKSLKKASIEALKSPSAPSKPQDSPRDDLDLLPQHFQQFQD
RAYWDAFFRERKQRAFEWYGTYNDLRPFVAKTVEGWRAGRKRERALVIGC
GNSDFSADLYQEGGFQRIVNVDFSASVIEEMRCKTRESCPEMEWEVMDVT
AGLAEGLGRGSFDVVLDKGTLDAIFSTPESECHADMMMDEVEDVLSPNGR
YMVVTLGQDFILGKLLERFGGSRSGDWRLSLHAVEDPEAASPFLIIVGVA
SRGQAGEGDGKRISVHFDDAGRRLADDKARTFRAPDLADVLSLVNMAQER
VAVKHELRDIVPGRFKGEIHIWLAPRSTDATSEIVSAAPDGPRYTLSIVD
LVPQNPAPLPCAVFIIPQGREHDWLFSTADGLRQVGLSTDYRRLICVRMN
RGHVFRDMDEVKTELGPVVIDFVPVDRDPAYMVPYLAVGDSIGARSAVVA
SGELPGCGRYCVEEEEDKDEDGKDRGAVVRRLIFYRNQHVIQSEVRLVPS
PQKGKQKVVEGGKKKKKGSSTKKDRASRNTCPSAQNYAVDWSYLSFDYHR
TMLGGLIALTYPHLRRAAKAQERRHCLLIGLGGGGLALFVRHYVPCLEVT
VVELEVGLVDVAKEWFGFSCGGEQGLRVDAGNGHTRVLLNEDESSTEMER
WDAIIVDVDNADASLGISCPAPDFLTGHFLESCRARLVDEGGILIMNVAA
RSSDLLEGSMEATRKIFASGEVHEARPTEQDVNRVLFALKTQRPTSASKL
SLGVQTEKWLDECFPESKNVDPLGLCDLNIS

mRNA from alignment at CM002455.1:1026583..1028928+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna414 ID=rna414|Name=rna414|organism=Nannochloropsis gaditana|type=mRNA|length=2346bp|location=Sequence derived from alignment at CM002455.1:1026583..1028928+ (Nannochloropsis gaditana)
ATGCCTCCCCCAGTATCAGCCAGTGTGCTCAAAAGCCTTAAAAAGGCCAG
CATCGAGGCTCTTAAGTCTCCGAGTGCCCCGTCGAAGCCTCAGGACTCTC
CCCGGGATGACCTCGACTTGCTCCCCCAACATTTTCAGCAGTTCCAGGAC
CGGGCGTATTGGGACGCTTTCTTCCGGGAACGCAAACAGCGGGCTTTCGA
ATGGTATGGAACTTATAATGATTTGCGTCCCTTTGTTGCGAAAACGGTAG
AGGGTTGGCgtgcagggaggaaacgcgAGCGCGCGCTAGTGATCGGCTGC
GGTAACTCGGACTTCTCGGCCGATTTGTaccaggaaggaggctttcaACG
GATAGTCAACGTCGATTTCAGTGCGTCGGTTATCGAGGAGATGCGATGCA
AGACGCGAGAGTCGTGCCCTGAGATGGAGTGGGAAGTCATGGACGTGACG
GCGGGCTTGGCGGaaggcctggggaggggcagcttCGACGTGGTTCTGGA
CAAGGGCACATTGGACGCTATTTTCAGTACCCCAGAGAGCGAGTGTCACG
CAGACATGATGATggacgaggtcgaggacgTGCTCTCGCCGAATGGGCGG
TACATGGTCGTGACTTTGGGGCAGGACTTTATATTGGGCAAGCTCCTGGA
ACGCTTCGGTGGTTCAAGGTCAGGGGATTGGCGCCTCTCTTTGCATGCCG
TGGAGGATCCTGAAGCCGCCTCGCCATTTTTAATCATTGTCGGAGTAGCG
TCTCGCGGTCaagctggggagggcgacggaaAGAGGATATCCGTGCATTT
TGACGACGCGGGGCGCCGCCTGGCTGACGACAAGGCGAGAACTTTCCGCG
CCCCGGACCTCGCCgacgtcctctccctcgtgaACATGGCACAAGAGCGT
GTCGCAGTTAAACATGAACTCCGCGACATCGTTCCCGGGCGTTTTAAGGG
CGAGATTCACATCTGGCTGGCACCGAGGAGCACAGACGCGACGTCTGAGA
tcgtctccgccgccccAGACGGACCACGCTACACACTCAGTATCGTGGAT
CTCGTCCCTCAAAACCCTGCGCCCCTACCCTGTGCCGTTTTCATCATCCC
TCAAGGCCGGGAGCACGACTGGCTCTTCTCCACCGCGGACGGGCTCCGGC
AAGTCGGGTTGAGCACCGATTACCGCCGCCTGATTTGCGTGCGAATGAAT
CGGGGCCACGTCTTCCGAGACATGGACGAGGTGAAAACCGAGCTAGGGCC
GGTGGTGATAGACTTTGTGCCCGTGGACCGAGACCCCGCGTACATGGTGC
CCTATCTGGCGGTGGGGGACTCCATTGGGGCCAGAAGCGCGGTGGTGGCA
TCCGGGGAGCTGCCGGGCTGTGGCCGGTACtgtgtcgaggaggaggaaga
caaggacgaagacggcaaggacaggggggcggtggtgcgACGGTTAATTT
TTTACCGCAACCAGCATGTGATCCAGAGTGAGGTGCGGCTAGTGCCATCG
CCGCAGAAGGGCAAGCAAAAGGTCGTCGAAGGcggcaagaagaaaaagaa
gggcagCAGTACGAAGAAAGATCGTGCCAGTAGGAATACCTGTCCCTCTG
CACAGAACTACGCCGTCGACTGGTCCTACCTGAGTTTTGACTATCATCGC
ACTATGCTGGGGGGCCTCATTGCGTTGACTTATCCTCACCTCCGTCGGGC
CGCGAAAGCTCAAGAACGTCGGCATTGCCTGCTAATCGGCTTGGGCGGCG
GGGGGTTGGCACTCTTCGTCCGACACTATGTCCCTTGCCTGGAGGTGACG
GTGGTCGAACTGGAAGTGGGCTTAGTAGACGTGGCAAAGGAATGGTTTGG
GTTCAGCTGTGGCGGGGAGCAAGGCTTGCGTGTGGATGCAGGGAATGGTC
ATACACGGGTATTGCTCAACGAAGATGAGTCGTCCACGGAGATGGAACGA
TGGGATGCGATTATTGTGGATGTGGACAACGCGGACGCCAGCCTGGGTAT
CTCCTGCCCGGCGCCTGATTTTTTGACCGGGCACTTCTTGGAGTCATGCA
GGGCTCGtctggtggacgagggcggtATTCTCATCATGAATGTCGCCGCC
CGGTCATCAGACCTACTGGAGGGCTCTATGGAAGCGACCAGAAAGATCTT
TGCATCGGGGGAAGTTCACGAAGCCAGGCCCACCGAACAGGACGTGAACC
GCGTGTTGTTCGCGCTCAAGACACAGCGTCCCACGAGTGCTAGTAAGCTG
TCGCTTGGCGTTCAGACCGAAAAGTGGCTCGATGAATGCTTCCCTGAAAG
CAAAAATGTCGACCCTCTGGGTCTTTGCGACTTGAATATTTCGTAG

Coding sequence (CDS) from alignment at CM002455.1:1026583..1028928+

>rna414 ID=rna414|Name=rna414|organism=Nannochloropsis gaditana|type=CDS|length=2346bp|location=Sequence derived from alignment at CM002455.1:1026583..1028928+ (Nannochloropsis gaditana)
ATGCCTCCCCCAGTATCAGCCAGTGTGCTCAAAAGCCTTAAAAAGGCCAG
CATCGAGGCTCTTAAGTCTCCGAGTGCCCCGTCGAAGCCTCAGGACTCTC
CCCGGGATGACCTCGACTTGCTCCCCCAACATTTTCAGCAGTTCCAGGAC
CGGGCGTATTGGGACGCTTTCTTCCGGGAACGCAAACAGCGGGCTTTCGA
ATGGTATGGAACTTATAATGATTTGCGTCCCTTTGTTGCGAAAACGGTAG
AGGGTTGGCgtgcagggaggaaacgcgAGCGCGCGCTAGTGATCGGCTGC
GGTAACTCGGACTTCTCGGCCGATTTGTaccaggaaggaggctttcaACG
GATAGTCAACGTCGATTTCAGTGCGTCGGTTATCGAGGAGATGCGATGCA
AGACGCGAGAGTCGTGCCCTGAGATGGAGTGGGAAGTCATGGACGTGACG
GCGGGCTTGGCGGaaggcctggggaggggcagcttCGACGTGGTTCTGGA
CAAGGGCACATTGGACGCTATTTTCAGTACCCCAGAGAGCGAGTGTCACG
CAGACATGATGATggacgaggtcgaggacgTGCTCTCGCCGAATGGGCGG
TACATGGTCGTGACTTTGGGGCAGGACTTTATATTGGGCAAGCTCCTGGA
ACGCTTCGGTGGTTCAAGGTCAGGGGATTGGCGCCTCTCTTTGCATGCCG
TGGAGGATCCTGAAGCCGCCTCGCCATTTTTAATCATTGTCGGAGTAGCG
TCTCGCGGTCaagctggggagggcgacggaaAGAGGATATCCGTGCATTT
TGACGACGCGGGGCGCCGCCTGGCTGACGACAAGGCGAGAACTTTCCGCG
CCCCGGACCTCGCCgacgtcctctccctcgtgaACATGGCACAAGAGCGT
GTCGCAGTTAAACATGAACTCCGCGACATCGTTCCCGGGCGTTTTAAGGG
CGAGATTCACATCTGGCTGGCACCGAGGAGCACAGACGCGACGTCTGAGA
tcgtctccgccgccccAGACGGACCACGCTACACACTCAGTATCGTGGAT
CTCGTCCCTCAAAACCCTGCGCCCCTACCCTGTGCCGTTTTCATCATCCC
TCAAGGCCGGGAGCACGACTGGCTCTTCTCCACCGCGGACGGGCTCCGGC
AAGTCGGGTTGAGCACCGATTACCGCCGCCTGATTTGCGTGCGAATGAAT
CGGGGCCACGTCTTCCGAGACATGGACGAGGTGAAAACCGAGCTAGGGCC
GGTGGTGATAGACTTTGTGCCCGTGGACCGAGACCCCGCGTACATGGTGC
CCTATCTGGCGGTGGGGGACTCCATTGGGGCCAGAAGCGCGGTGGTGGCA
TCCGGGGAGCTGCCGGGCTGTGGCCGGTACtgtgtcgaggaggaggaaga
caaggacgaagacggcaaggacaggggggcggtggtgcgACGGTTAATTT
TTTACCGCAACCAGCATGTGATCCAGAGTGAGGTGCGGCTAGTGCCATCG
CCGCAGAAGGGCAAGCAAAAGGTCGTCGAAGGcggcaagaagaaaaagaa
gggcagCAGTACGAAGAAAGATCGTGCCAGTAGGAATACCTGTCCCTCTG
CACAGAACTACGCCGTCGACTGGTCCTACCTGAGTTTTGACTATCATCGC
ACTATGCTGGGGGGCCTCATTGCGTTGACTTATCCTCACCTCCGTCGGGC
CGCGAAAGCTCAAGAACGTCGGCATTGCCTGCTAATCGGCTTGGGCGGCG
GGGGGTTGGCACTCTTCGTCCGACACTATGTCCCTTGCCTGGAGGTGACG
GTGGTCGAACTGGAAGTGGGCTTAGTAGACGTGGCAAAGGAATGGTTTGG
GTTCAGCTGTGGCGGGGAGCAAGGCTTGCGTGTGGATGCAGGGAATGGTC
ATACACGGGTATTGCTCAACGAAGATGAGTCGTCCACGGAGATGGAACGA
TGGGATGCGATTATTGTGGATGTGGACAACGCGGACGCCAGCCTGGGTAT
CTCCTGCCCGGCGCCTGATTTTTTGACCGGGCACTTCTTGGAGTCATGCA
GGGCTCGtctggtggacgagggcggtATTCTCATCATGAATGTCGCCGCC
CGGTCATCAGACCTACTGGAGGGCTCTATGGAAGCGACCAGAAAGATCTT
TGCATCGGGGGAAGTTCACGAAGCCAGGCCCACCGAACAGGACGTGAACC
GCGTGTTGTTCGCGCTCAAGACACAGCGTCCCACGAGTGCTAGTAAGCTG
TCGCTTGGCGTTCAGACCGAAAAGTGGCTCGATGAATGCTTCCCTGAAAG
CAAAAATGTCGACCCTCTGGGTCTTTGCGACTTGAATATTTCGTAG

Synonyms

Publications