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Properties
| Property Name | Value |
|---|
| Product | proteasome subunit alpha type 2 |
| Orig transcript id | gnl|cribi|Naga_100409g5.8443.mrna |
| Orig protein id | gnl|cribi|Naga_100409g5.8443 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:964876..966908 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4138 ID=rna4138|Name=rna4138|organism=Nannochloropsis gaditana|type=mRNA|length=2313bp
AGAGGGGCCGGGGGGTTCTTCTTAAAGACCACACGAGGGGCTTGCCGGCT
AGGTGGCATACATTTGCTTATCGGTCATGGGGGATGGACGTATGAAGCGT
CAAACAGCGTGTGTATCATTTGGACGCACATGCTCGATTGTATCTAATTC
TGCCATGCGACTCCTCTGCCCAACCTAGAGAAAAGACGGCTGCATAACTG
CCCTGGGATGCCACGCAGAAGATCATTGCCTGCAGTAAAGGCATCAATAC
CATCCTTATGTCCAGTCAGGACCCTCGCCTCTGTGTCCCTCCTCCTGTTC
ATTGGTCCTTCACGTGCTTTCACCTCTCCAAAGCCTCAAATATCTCTGCC
ATCCTGTCGGGGCCAAAGCATCGCAGCACTTACAACCAGACCAAGCGTGC
ACACCTTCCAACAGTTGGGTAACACCATACTATCATGGCCTTCCTTGACG
ACACGACGTCCCTCCCTTACTTCCCTCCCTTCTCGTGCTTCCCGCATCCA
ACGTGCTGCGACCGCGGGGGAGGACGACAGCAGTTCGAAGTCCTCGGGAA
ATACCGGCCAAAAGAACAAGGGTTTGCGGAATAATAATAGGCAACGGCGG
CCCCAGATATTCATTAAGAAACTCCAGGCATTCATGGGGCGTTTCCGAAC
ATTCATCCGCAGCAAAATGATGTTGAAAGTGAACGGACGCCCCATTCTCA
AAGTGACAGGCTGGCACGCTTCCTTTGCCCTGATGCTGGCCTTCGTCCTC
CTATCCTCGGTAATGCGGGGGTCAGGAAGGGCTGGGCGCGGGGTGAGTCC
TGCGGAAGTGCCCTATTCGGATTTTCTCAAGCTGGTTAAGGAGCATGGAC
CGGACGTGGTGTCGCGGTTGCGGATTGCCCCCGACCGCTTCGACTTCCTC
ATGAACGGGGCCCCCTCTTTCACGCGCCCTGTCAAGGCACACCCCGCCTT
GCTCTTCTTTCTGGACAAGTACAACATTCCTTTCTATGCCGGGAGCCCCA
GCAGCAAGAGTTTAGTGGCATTCTTGCTCTTGAATTTGCTGCCCTTTGCC
TGGATATTTTTGAGCATGGGGATGGGTCGGCGGATGTACGGGGACATGGC
AGGTTCTGTGGGGAAAAACGCGGAAGAGAACAACATCGACCGGTCCTTGA
CCTTCGATGACGTGGCGGGCATCGACAGGGCGAAGCGGGAGGTGCGAGAG
TTGGTGGACATGTTAAAGTCCCCGCAAAAATACGGAAAGTTGGGCGCGCG
GTTGCCCAAGGGGATCCTTTTGGCAGGGCCCCCAGGCACGGGGAAGACGC
TGTTGGCAAGGGCCTTGGCAAGCGAGGCGGGCGTTCCGTTTTTATACTCG
GCGGGTTCGGAGTTTGTGGAGATGTTTGTGGGCAGAGGTGCCGCCCGGAT
TCGAACCCTCTTCCAAAAGGCCCAGAAGCAAGCGCCGTGCATCATCTTCC
TGGATGAGTTGGACACGCTGGGGAAACAACGCTCTTTGCGCTTGGGAGGT
TCCAACGACGAGGTGGAGCAAACGTTGAACCAGTTGTTGGCTTGCATGGA
CGGATTGGACAGCAACCAGAGCGGTGTCATTGTCATCGCGGCCACGAATC
GGTATGAGATATTGGACGACGCCTTGACCAGACCAGGACGATTGGACCGG
ATCGTCCGCGTCGAACTCCCCGACCGAAGCGGGCGGGAGGCGATTCTCCG
CGTGCATACCCGGAAGACGCCGCTGGAACACGATGCAGATTTGGGCAAAA
TCGCGCAATTGACCCCTGGCATGAGCGGGGCGGACCTGGCAGGCCTCGTG
AACGAGGCAGCGATTCGGGCCGTGCGTCGGAGCAGCCCCATGGTCGGTCA
GGTAGACTTAGACTTGGCGGTCAAGGATTTCTTCCGGAGTCGAGGCACGG
AAGCCGAGAAAAGCTGGAAGCGGTTGGTGGGAAATGTGATGGGCTGAAGT
GGCAGTCGAGGGTAGAAAGGGGGCTGACGGCGTACGGAGACGCAAGGCCA
GCGTGTTGGGATAATTTATGTGCAGTAAAGGTAAGATAGATGTGCTTCCC
TGTAAACATGCACACACACGGCGAGAATGGAGGCTGGAAGGGGCTCCACG
GCCAGGGGGGAGTCCGAAAAGGAAGGAGGAATGTTTTTGTCGGTGGCTTG
AGGGAGGGACTGAGCGACTTTTGGAAAACGAAAGTTGATGGCGGTTTTAT
TTCTCATAGATAGAGGCCCGAGAAACGAACTCAGATGTTTAGAACGAGAT
CAGGACCCCGGCTGGCATGAGTAAAGCGAAGAAAGAAAAGAAATATTGTG
AAAGCGAAACATC back to topprotein sequence of rna4138 >rna4138-protein ID=rna4138-protein|Name=rna4138|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATE
KKLPSVLIDEAHVQKIELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYFL
QYREHQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQV
DPSGAYFGWQATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGF
EGEMNESNIEIGIIGADRKFRILTPAEVKDYLDEAN back to topmRNA from alignment at CM002462.1:964876..966908+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4138 ID=rna4138|Name=rna4138|organism=Nannochloropsis gaditana|type=mRNA|length=2033bp|location=Sequence derived from alignment at CM002462.1:964876..966908+ (Nannochloropsis gaditana)
AAACGACGCTCAAGCAGCTCACATTCCGCCTCTATCATATCCATTCAAGC
TATAGGATACAGGGACAGTCATGTCGGGGGATTCTGCGTACAGCTTTTCA
TTGACGACCTTTTCCCGAACTGGAAAGCTCCTCCAAATCGAGTATGCGCT
AAGCGCTGCGCAACAGGGAAAAACTTCCTTAGGCATCCGCGGTacgtttt
aaaaaaaggCCTTCAGAGAGAGTGAGCATGGCTgtgcggaagaggagagt
AAGCATGCGCCCTAGTCCTACTGGCGTATGAAATTTTCATTTGTCTTGCG
GGGAGCGCCTCCAACCGGGGCATGTTAAGCAAGAAGATGGCGTAAACGTT
GAAATGCTGTCAAAGACAAACGAAAAACATTAATCCTGGTGCACGAAACC
AGAAGTGACTTTTTTCCCACGGGCTGTCAACTGGCTGTGCCATGCCCACT
CTGAAAAGGAAGCTCGACGCCGCCACGCAGACATTCCGGGTGGCATCATC
TTACCCAATGCTTTCAACCTCCCTTTCTAAACTACAGCAACCAACGGCGT
CGTCATCGCCACTGAAAAAAAACTTCCTTCCGTCTTGATCGATGAAGCGC
ACGTGCAGAAGATAGAACTCATCAACCCTTCCACGGGCTTCGTATTTTCG
GGCCTGGGACCCGACTACCGCGTCCTAGTTCGCAAAAGCCGCAAGGTAGG
GAAAAGGGAGCtcaaggaaagaaggcagcGGGTAtaggaagaaaatgatg
cAAGAGAATTGtgatggggaaagagggacgaTGAGATGTGTGTCTATAAA
GTACGATACGGAGTCGTCGCCTGGGAGAAACCCTTCTGAGCCTTCGTACA
ATATTTTCCAACACGCTGGTCCTTTTCCCGTACAGCGAGCACAATCTTAT
TTTTTGCAGTACCGGGAGCATCAGCCCGTAGGACAACTTGTGCGAGATAC
TGCCGGGGTCATGCAggtctgtcccttcctcccttcctgccctccctctg
cccctcttccattctcCCCTGCTGCCCTCCACATCGGttccctcaccctc
tcccctcttgtTCCTCCTTGCCATGTTACCCATTTCCAACAGGAATTTAC
GCAGTCGGGAGGGGTGCGTCCCTTCGGACTTTCCCTATTGGTGGCCGGCT
ACGACGACAATGGACCGCAGCTCTttcaggtagggagggagggagggctg
gagccGTCCGATTgatttcccgccctttttgCGGGCCTCGGTTTTTTGCG
TCGTGTCTCTtattcttcccttcttgtcgTTTTCTCATCTCCCCCGTCGC
GGCCAGGTCGACCCCTCGGGGGCGTACTTTGGCTGGCAAGCCACAGCGAT
AGGGAAGAACCACGTGAACGCGAAGAACTTCTTGGAAAAGCGTTAcaacg
aggagatggagctggACGACGCGGTCCACACGGCCCTCTTGACTTTGAGA
GAGGGCTTCGAAGGGTCAGTGCCGAGcccgtccttgtccctctccccccc
ttcccccaaaccccgccatgccctccctccatccctccctccatcgatTC
CACGCCAGCATTTATGTCCCGGCCCATAGGATCCGAAAGGACCCGGATGC
CCCTTGTGTctggccccttccctccctcttctcctcccctcacccctccc
tccctccctccctcgctcccttcctcccttcccctggcctGTCAGGGAGA
TGAATGAAAGCAACATCGAGATCGGTATCATTGGGGCGGACAGAAAGTTC
CGCATCCTGACGCCAGCGGAGGTGAAGGACTACTTGGACGAGGCGAActa
gagggagaaggaggagggaaaggcaggggggggagaccgggtggagggga
tcgtgtggaaaggaaggcttGGCAAGCTAAAGAACGAAGAACCGGGACAG
AATCGAAGCCATTAAAAGCGCCAATGCGTCCCGTATGCCCCGTCCACTCG
AGACTCAAGGCTCTTGTGCCCCCAGTCGACAGGATTATCTTTTTGGCCAA
GTGTAGACAAGTACTTTActtgctccccccctc back to topCoding sequence (CDS) from alignment at CM002462.1:964876..966908+ >rna4138 ID=rna4138|Name=rna4138|organism=Nannochloropsis gaditana|type=CDS|length=4266bp|location=Sequence derived from alignment at CM002462.1:964876..966908+ (Nannochloropsis gaditana)
ATGTCGGGGGATTCTGCGTACAGCTTTTCATTGACGACCTTTTCCCGAAC
TGGAAAGCTCCTCCAAATCGAGTATGCGCTAAGCGCTGCGCAACAGGGAA
AAACTTCCTTAGGCATCCGCGCAACCAACGGCGTCGTCATCGCCACTGAA
AAAAAACTTCCTTCCGTCTTGATCGATGAAGCGCACGTGCAGAAGATAGA
ACTCATCAACCCTTCCACGGGCTTCGTATTTTCGGGCCTGGGACCCGACT
ACCGCGTCCTAGTTCGCAAAAGCCGCAAGCGAGCACAATCTTATTTTTTG
CAGTACCGGGAGCATCAGCCCGTAGGACAACTTGTGCGAGATACTGCCGG
GGTCATGCAgGAATTTACGCAGTCGGGAGGGGTGCGTCCCTTCGGACTTT
CCCTATTGGTGGCCGGCTACGACGACAATGGACCGCAGCTCTttcagGTC
GACCCCTCGGGGGCGTACTTTGGCTGGCAAGCCACAGCGATAGGGAAGAA
CCACGTGAACGCGAAGAACTTCTTGGAAAAGCGTTAcaacgaggagatgg
agctggACGACGCGGTCCACACGGCCCTCTTGACTTTGAGAGAGGGCTTC
GAAGGGGAGATGAATGAAAGCAACATCGAGATCGGTATCATTGGGGCGGA
CAGAAAGTTCCGCATCCTGACGCCAGCGGAGGTGAAGGACTACTTGGACG
AGGCGAActagATGTCGGGGGATTCTGCGTACAGCTTTTCATTGACGACC
TTTTCCCGAACTGGAAAGCTCCTCCAAATCGAGTATGCGCTAAGCGCTGC
GCAACAGGGAAAAACTTCCTTAGGCATCCGCGCAACCAACGGCGTCGTCA
TCGCCACTGAAAAAAAACTTCCTTCCGTCTTGATCGATGAAGCGCACGTG
CAGAAGATAGAACTCATCAACCCTTCCACGGGCTTCGTATTTTCGGGCCT
GGGACCCGACTACCGCGTCCTAGTTCGCAAAAGCCGCAAGCGAGCACAAT
CTTATTTTTTGCAGTACCGGGAGCATCAGCCCGTAGGACAACTTGTGCGA
GATACTGCCGGGGTCATGCAgGAATTTACGCAGTCGGGAGGGGTGCGTCC
CTTCGGACTTTCCCTATTGGTGGCCGGCTACGACGACAATGGACCGCAGC
TCTttcagGTCGACCCCTCGGGGGCGTACTTTGGCTGGCAAGCCACAGCG
ATAGGGAAGAACCACGTGAACGCGAAGAACTTCTTGGAAAAGCGTTAcaa
cgaggagatggagctggACGACGCGGTCCACACGGCCCTCTTGACTTTGA
GAGAGGGCTTCGAAGGGGAGATGAATGAAAGCAACATCGAGATCGGTATC
ATTGGGGCGGACAGAAAGTTCCGCATCCTGACGCCAGCGGAGGTGAAGGA
CTACTTGGACGAGGCGAActagATGTCGGGGGATTCTGCGTACAGCTTTT
CATTGACGACCTTTTCCCGAACTGGAAAGCTCCTCCAAATCGAGTATGCG
CTAAGCGCTGCGCAACAGGGAAAAACTTCCTTAGGCATCCGCGCAACCAA
CGGCGTCGTCATCGCCACTGAAAAAAAACTTCCTTCCGTCTTGATCGATG
AAGCGCACGTGCAGAAGATAGAACTCATCAACCCTTCCACGGGCTTCGTA
TTTTCGGGCCTGGGACCCGACTACCGCGTCCTAGTTCGCAAAAGCCGCAA
GCGAGCACAATCTTATTTTTTGCAGTACCGGGAGCATCAGCCCGTAGGAC
AACTTGTGCGAGATACTGCCGGGGTCATGCAgGAATTTACGCAGTCGGGA
GGGGTGCGTCCCTTCGGACTTTCCCTATTGGTGGCCGGCTACGACGACAA
TGGACCGCAGCTCTttcagGTCGACCCCTCGGGGGCGTACTTTGGCTGGC
AAGCCACAGCGATAGGGAAGAACCACGTGAACGCGAAGAACTTCTTGGAA
AAGCGTTAcaacgaggagatggagctggACGACGCGGTCCACACGGCCCT
CTTGACTTTGAGAGAGGGCTTCGAAGGGGAGATGAATGAAAGCAACATCG
AGATCGGTATCATTGGGGCGGACAGAAAGTTCCGCATCCTGACGCCAGCG
GAGGTGAAGGACTACTTGGACGAGGCGAActagATGTCGGGGGATTCTGC
GTACAGCTTTTCATTGACGACCTTTTCCCGAACTGGAAAGCTCCTCCAAA
TCGAGTATGCGCTAAGCGCTGCGCAACAGGGAAAAACTTCCTTAGGCATC
CGCGCAACCAACGGCGTCGTCATCGCCACTGAAAAAAAACTTCCTTCCGT
CTTGATCGATGAAGCGCACGTGCAGAAGATAGAACTCATCAACCCTTCCA
CGGGCTTCGTATTTTCGGGCCTGGGACCCGACTACCGCGTCCTAGTTCGC
AAAAGCCGCAAGCGAGCACAATCTTATTTTTTGCAGTACCGGGAGCATCA
GCCCGTAGGACAACTTGTGCGAGATACTGCCGGGGTCATGCAgGAATTTA
CGCAGTCGGGAGGGGTGCGTCCCTTCGGACTTTCCCTATTGGTGGCCGGC
TACGACGACAATGGACCGCAGCTCTttcagGTCGACCCCTCGGGGGCGTA
CTTTGGCTGGCAAGCCACAGCGATAGGGAAGAACCACGTGAACGCGAAGA
ACTTCTTGGAAAAGCGTTAcaacgaggagatggagctggACGACGCGGTC
CACACGGCCCTCTTGACTTTGAGAGAGGGCTTCGAAGGGGAGATGAATGA
AAGCAACATCGAGATCGGTATCATTGGGGCGGACAGAAAGTTCCGCATCC
TGACGCCAGCGGAGGTGAAGGACTACTTGGACGAGGCGAActagATGTCG
GGGGATTCTGCGTACAGCTTTTCATTGACGACCTTTTCCCGAACTGGAAA
GCTCCTCCAAATCGAGTATGCGCTAAGCGCTGCGCAACAGGGAAAAACTT
CCTTAGGCATCCGCGCAACCAACGGCGTCGTCATCGCCACTGAAAAAAAA
CTTCCTTCCGTCTTGATCGATGAAGCGCACGTGCAGAAGATAGAACTCAT
CAACCCTTCCACGGGCTTCGTATTTTCGGGCCTGGGACCCGACTACCGCG
TCCTAGTTCGCAAAAGCCGCAAGCGAGCACAATCTTATTTTTTGCAGTAC
CGGGAGCATCAGCCCGTAGGACAACTTGTGCGAGATACTGCCGGGGTCAT
GCAgGAATTTACGCAGTCGGGAGGGGTGCGTCCCTTCGGACTTTCCCTAT
TGGTGGCCGGCTACGACGACAATGGACCGCAGCTCTttcagGTCGACCCC
TCGGGGGCGTACTTTGGCTGGCAAGCCACAGCGATAGGGAAGAACCACGT
GAACGCGAAGAACTTCTTGGAAAAGCGTTAcaacgaggagatggagctgg
ACGACGCGGTCCACACGGCCCTCTTGACTTTGAGAGAGGGCTTCGAAGGG
GAGATGAATGAAAGCAACATCGAGATCGGTATCATTGGGGCGGACAGAAA
GTTCCGCATCCTGACGCCAGCGGAGGTGAAGGACTACTTGGACGAGGCGA
ActagATGTCGGGGGATTCTGCGTACAGCTTTTCATTGACGACCTTTTCC
CGAACTGGAAAGCTCCTCCAAATCGAGTATGCGCTAAGCGCTGCGCAACA
GGGAAAAACTTCCTTAGGCATCCGCGCAACCAACGGCGTCGTCATCGCCA
CTGAAAAAAAACTTCCTTCCGTCTTGATCGATGAAGCGCACGTGCAGAAG
ATAGAACTCATCAACCCTTCCACGGGCTTCGTATTTTCGGGCCTGGGACC
CGACTACCGCGTCCTAGTTCGCAAAAGCCGCAAGCGAGCACAATCTTATT
TTTTGCAGTACCGGGAGCATCAGCCCGTAGGACAACTTGTGCGAGATACT
GCCGGGGTCATGCAgGAATTTACGCAGTCGGGAGGGGTGCGTCCCTTCGG
ACTTTCCCTATTGGTGGCCGGCTACGACGACAATGGACCGCAGCTCTttc
agGTCGACCCCTCGGGGGCGTACTTTGGCTGGCAAGCCACAGCGATAGGG
AAGAACCACGTGAACGCGAAGAACTTCTTGGAAAAGCGTTAcaacgagga
gatggagctggACGACGCGGTCCACACGGCCCTCTTGACTTTGAGAGAGG
GCTTCGAAGGGGAGATGAATGAAAGCAACATCGAGATCGGTATCATTGGG
GCGGACAGAAAGTTCCGCATCCTGACGCCAGCGGAGGTGAAGGACTACTT
GGACGAGGCGAActag back to top
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