rna4124, rna4124 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4124
Unique Name	rna4124
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	210
Alignment location	CM002462.1:919326..923708 +

Link to JBrowse

Properties


Property Name	Value
Product	phosphatidylinositol 3-kinase vps34
Orig transcript id	gnl\|cribi\|Naga_100084g15.1571.mrna
Orig protein id	gnl\|cribi\|Naga_100084g15.1571
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:919326..923708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100084g15	gene3969	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4124	rna4124-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26563.1	cds4114	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:919326..923708+
coding sequence from alignment at CM002462.1:919326..923708+

mRNA sequence

>rna4124 ID=rna4124|Name=rna4124|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGCCAGCAAGCATTTCACCAAACCCTGGAACCGCAGGCCTCTTCTCTTC
ATGTAAAGAAAATTCTATTGCCGCGGCCATTGTCGACGTTAGGCTGATGA
TATGCCTAGGACATATGGAATGCCAATCAAGCTTAGCTTACATTTGGGGG
GATGAACAGAGATGGTCCGTTTATGCGATAGAAGCTATACTATGCGATTT
GAATATTTGA

protein sequence of rna4124

>rna4124-protein ID=rna4124-protein|Name=rna4124|organism=Nannochloropsis gaditana|type=polypeptide|length=585bp
MKHDRQNGHKFEAVRFALLYTLRESNEEVYKALCGQDKWFKSIIKTQYDV
REGPGLRERKQARLRRLLAEKKLCEAPFPVPLPVDTSTFVTRLDATSACI
YGSKTYPAFITFLSSPSGHDLNADIPLEMAERDMCEKGWFAHSSTATEKD
ELKASYSLSVSGHTPSMWLSPRQPPRQQLHDLESSSIKGKVLIFKCREDL
RQDQLVLQLFNLMDTILKHELGLDLCLTHYSVMAMGPGEGVVQYVPHAYT
IADILASADLTSSVSANKSKIMAFFRKHSTRFRRDNGEEKIQEGEETNVK
GGREGREEGDGMENSAMEVDPKVMDTYVKSCAGYCVMTYLLGIGDRHLHN
IMLCPDGHLFHIDFGFILGKDPKPTPLLGPFRLSLSMVEGMGGKEHENFK
RFKQLCTVTFQCLRRHASLIIWVVGLMVDAGLKDLGGAAHVARSSGIREG
QKNCSNTSSNEEFGGRSCAGSRSAFKRLGSRLLESSRGKSTQTVDDSRSG
AMSGGGNADIDMMAVAPPSFQESLHVVPPHHIEASQSLRKMESRFRLDLT
DDEAEKHFDVLVHKAIGALAPQVIEALHNLALKTK

mRNA from alignment at CM002462.1:919326..923708+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4124 ID=rna4124|Name=rna4124|organism=Nannochloropsis gaditana|type=mRNA|length=4383bp|location=Sequence derived from alignment at CM002462.1:919326..923708+ (Nannochloropsis gaditana)
AGGTATTTTCCATGACATGGAATGTCGAAAACCTTTGACGAGTGCAAAat
ttgcagcagcagcagcagcagcggcagcgaaAGCAGTCAAGACGAAgggt
ggacggagggggaagaagaggcgttGCCTCCCAAGAACTCAACAATAATT
TCCGAAGATACATCATACTCTACTGGAACTCATTGTTGCATTAAGTTCGC
ATGTCGTGTGCTACGTTTGGAACTACCGGTCGACGGGCCCAAATCGTTTT
TAGGTATCGAGAGGGAAAAACTAGTTGTGACCTGTCAACTTCGGGGGCCT
CCTGATCGTGACGTGGACACCAGTAGCTTTAATGTCGCTAGTGCAACCTT
ACCTACAAGCTACCATTTCTCAAAACGGCATATATCTTGGAATCAAGCTG
TGAACCTCATGACCATAGAATGGTCAGAGGAGCTGGTTTCATTAAGGCAA
GCTTTCGCTGGCGCTGCTTTACACTTCATGCTATGGTCATCGAATGCCCT
CTTAGGACAAGCAGATTTCCCCTTAAATATCATTGACAGTGAGAACCCTT
TAGGCCCTCAAATAGCCCAACTTCGCTTCACTCACGCTGCACGAAAAGGG
CAGGTACAAAACCACTCGTATGAAAGCTGGAAACTTCAGAAGGCGAGCTC
AACGGCATCATTTCGGTCTCCGCGACCCAGCGATTTGCCGGTACCTGAAG
CAATGCCTTCGACAAAAATGCGGCAATGCATAGTTTCAGAACCGTCTTGT
TTAGGTGACAGCGGAGAGAAACATTCGCCGACTCCTCCTGAGCCGAAACT
CGCCCATGACAGTCTCGAGTCTGCGTCCATGTCAGCATCCGAggtctcca
cttcctccgaCTCTTGGCCCAAAGAAGCTGCATTGGTATTTGAGATTCAT
TTCCCGCCTCGCAGACTTCCATCACTGCCAAGAAcagcccctctctcctc
tcccggtATCTGGCAACGCATGCAAGGCCTAATAGCCCGACCTTCCGACG
CGCTGACCTCTGAGGAAGCAGACTTGCTCTGGCGCCACCGGCACACAGTC
ATACCACAGGATTCTCGAGCACTGGTGAAATTGTTGCGGGCATGGATGCT
TTCGACGGCGTTCCAATACGATATGTGCACGCAGCAGCGTCGGCGTGTGC
AAGATCCAGAAGCGCACGTACTCAGGGCGAGTGGGGATGACTTTGAGGAA
TCTGCTTCCGAATTTTCAAGTCCCGTTCTAGAACTATTGGAAATATGGCG
TACTGGACCTAATGACCTGTCCTTCATGGACGCCATGAAATTGTTGGGAG
CGTATTTCGTCCACCCGGCGATTCGATCTCTTGCCTTGCAGAGGTTAGAG
GAGGCTGCGGACGAGGaactttctttcttctcgctcCAGTTGGTACAGCT
ACTCCGCTATGAGGCGACGTTTTCGATCGTTCCCTCTCCTGATCCTGTCA
TTGGTTCGACGCCGACAAGCATAGATGTCACGACCtccctcggggggggg
gatatACTCATGACGCCAAGATAGATACAAGCCCTACTACTGTCTTCCCG
CCTACGGCCAGGGCTAATCGGCTGGGGCGTCCGAGATCCCTTGGGAAACT
TCTTATAGAACGGGCGTGTCGTAAACTGGAATTAGCGAACGCGCTGTTTT
GGCACCTGGAAGCACAGATGAAGCACGACCGTCAAAATGGCCACAAGTTC
GAGGCGGTCCGTTTTGCTTTGTTGTACACCTTGCGCGAATCTAATGAGGA
GGTCTACAAAGCACTTTGCGGACAAGACAAATGGTTTAAAAGTATCATCA
AAACCCAATACGACGTGCGGGAAGGTCCAGGACTGCGCGAGCGAAAGCAA
GCAAGGCTTCGTAGACTACTAGCAGAGAAGAAATTGTGCGAGGCGCCTTT
TCCAGTGCCTTTACCCGTCGACACTTCCACCTTCGTCACGCGATTAGATG
CAACGTCAGCATGTATTTACGGCAGTAAGACTTATCCAGCTTTTATAACT
TTTCTTTCATCGCCTTCTGGCCACGACTTGAATGCCGACATTCCCCTTGA
AATGGCAGAAAGGGACATGTGCGAGAAAGGTTGGTTTGCCCATTCTTCGA
CGGCAACTGAGAAGGACGAACTGAAAGCTTCCTATAGCCTCTCAGTCTCA
GGGCATACTCCTTCCATGTGGCTTTCTCCAAGACAACCGCCGCGTCAGCA
ACTTCACGACCTGGAAAGCTCTTCAATCAAAGGGAAAGTCTTGATTTTCA
AATGCCGGGAGGATCTGCGACAGGATCAACTCGTGCTTCAGCTTTTCAAT
CTTATGGATACCATTCTGAAACATGAACTGGGCCTGGATCTTTGTCTGAC
GCACTACAGCGTCATGGCCATGGGgccaggagagggagtggtcCAGTACG
TCCCCCACGCCTATACTATAGCAGACATCTTAGCTTCGGCTGACCTTACA
AGCTCAGTTTCGGCAAACAAAAGCAAGATTATGGCCTTCTTCAGAAAGCA
TAGCACTCGATTTAGACGAGATaacggagaggagaagatacaagaaggag
aggaaacgaaTGttaaggggggaagggagggtcgggAAGAGGGTGATGGA
ATGGAGAATAGTGCAATGGAGGTCGATCCGAAGGTCATGGATACGTACGT
CAAGAGCTGTGCGGGGTATTGTGTGATGACATATTTGTTGGGGATCGGGG
ACCGCCATCTGCATAATATCATGCTCTGTCCTGACGGCCACCTTTTTCAT
ATTGATTTCGGCTTCATTCTGGGGAAAGATCCCAAGCCTACCCCGTTGCT
TGGGCCATTCCGACTCTCATTATCTATGGtagaagggatgggggggaaag
agcatGAGAACTTTAAGCGCTTTAAGCAGCTGTGCACGGTGACTTTCCAA
TGTTTGCGCCGACATGCTTCTCTCATAATATGGGTTGTTGGTTTGATGGT
TGATGCGGGCCTGAAAGATCTAGGAGGAGCAGCACACGTCGCACGGAGCT
CGGGCATTCGTGAAGGTCAGAAGAATTGCTCAAACACTTCTTCGAACGAA
GAATTTGGTGGTCGGTCTTGTGCTGGTAGCAGAAGCGCCTTCAAGCGACT
TGGAAGCCGTCTTCTTGAGAGCAGCAGAGGAAAATCTACGCAAACTGTGG
ACGACTCCAGAAGTGGCGCCATgtccgggggagggaatgcaGACATCGAC
ATGATGGCTGTCgcccctccgtctttccaAGAGAGCCTGCACGTTGTCCC
ACCACACCACATCGAGGCTTCTCAGAGTCTGCGTAAGATGGAGTCTCGCT
TTCGACTGGATCTGACAGACGATGAGGCCGAGAAGCACTTTGATGTGTTA
GTCCACAAAGCAATAGGTGCGTTGGCTCCACAAGTGATAGAGGCCCTCCA
TAATCTTGCACTCAAGACCAAATAAGCATTGAGTGGCCATGATTAGGtgt
gctttcttttttccacgaATACGAAAGACTAGTGTAAGGAGCACAAAAGA
TGGTAATTGCAATCATTCAAGGTTAAATTCGTAAAGCCGCCCTGAAGAGT
ACCACGGCGTGTAAAAATTAGTCATATTCTGGCCATACGAACGACAAAGT
TAAAAGATATTTTAGTGCAAGCGGTCTTAAATGGAGGACGACAACCGTGG
TTCTGGCTGCTTGCGTAGGAAGTAAAGCGCTACCGCGAAGAGAATCACAC
TGTAGAACTGTCCTTGCAAGAAAGGCATTTTTATGTGTCCTTCTCTTGGC
AAGCTAACCTCGACTTCAACAGGGGAGCTCTTTGTTCTTTGGTTGATCAA
GTCCAGCAAAGGGGTCTGCTTGGACAGGCACGCAGATCTGGCTTTTTTTG
GGAGTCCTTTTGTTGGTCACGCATCGAAACATATTTCTTCACACACTTGT
CGTTATGCTTGCATTGTCTTGTCATTTGATATGGCTTGATATCGTTCATT
TAGTACTTTTACCATGTAAATGATTATTAAATTGACAGGTGACAGAGCAA
AGATTACAGTCATGTCAGAGTAACCGTGACAAAGGACACTTCATTAAAGA
TGTATCCACACTCATCCAGCGCTTAGCCTTGAATGCAGAAATTAAATAGT
GAATTTGGGATTAAATGACATTCTGTGAAACTCTTCAATCAATACAAGAC
GCGATACTGAAAATATATAAGACACGTCCTATTTATAACCTTACTCAAAG
CCAAGCTTGGGGTCGAAGTGGTATAAAAGGGACTCCCATATGACATTTAA
AATATACTACTGGACGGTATGATACAAAAAGACAAGCAATCATGTCTTCC
GCTGATATATATAAAGCGCGAATCTCCCGCTCATGTTTCTTTGGCTACGT
ATAAGTGCCATTCCAAGGTCCAGGCCGCTCTGC

Coding sequence (CDS) from alignment at CM002462.1:919326..923708+

>rna4124 ID=rna4124|Name=rna4124|organism=Nannochloropsis gaditana|type=CDS|length=1758bp|location=Sequence derived from alignment at CM002462.1:919326..923708+ (Nannochloropsis gaditana)
ATGAAGCACGACCGTCAAAATGGCCACAAGTTCGAGGCGGTCCGTTTTGC
TTTGTTGTACACCTTGCGCGAATCTAATGAGGAGGTCTACAAAGCACTTT
GCGGACAAGACAAATGGTTTAAAAGTATCATCAAAACCCAATACGACGTG
CGGGAAGGTCCAGGACTGCGCGAGCGAAAGCAAGCAAGGCTTCGTAGACT
ACTAGCAGAGAAGAAATTGTGCGAGGCGCCTTTTCCAGTGCCTTTACCCG
TCGACACTTCCACCTTCGTCACGCGATTAGATGCAACGTCAGCATGTATT
TACGGCAGTAAGACTTATCCAGCTTTTATAACTTTTCTTTCATCGCCTTC
TGGCCACGACTTGAATGCCGACATTCCCCTTGAAATGGCAGAAAGGGACA
TGTGCGAGAAAGGTTGGTTTGCCCATTCTTCGACGGCAACTGAGAAGGAC
GAACTGAAAGCTTCCTATAGCCTCTCAGTCTCAGGGCATACTCCTTCCAT
GTGGCTTTCTCCAAGACAACCGCCGCGTCAGCAACTTCACGACCTGGAAA
GCTCTTCAATCAAAGGGAAAGTCTTGATTTTCAAATGCCGGGAGGATCTG
CGACAGGATCAACTCGTGCTTCAGCTTTTCAATCTTATGGATACCATTCT
GAAACATGAACTGGGCCTGGATCTTTGTCTGACGCACTACAGCGTCATGG
CCATGGGgccaggagagggagtggtcCAGTACGTCCCCCACGCCTATACT
ATAGCAGACATCTTAGCTTCGGCTGACCTTACAAGCTCAGTTTCGGCAAA
CAAAAGCAAGATTATGGCCTTCTTCAGAAAGCATAGCACTCGATTTAGAC
GAGATaacggagaggagaagatacaagaaggagaggaaacgaaTGttaag
gggggaagggagggtcgggAAGAGGGTGATGGAATGGAGAATAGTGCAAT
GGAGGTCGATCCGAAGGTCATGGATACGTACGTCAAGAGCTGTGCGGGGT
ATTGTGTGATGACATATTTGTTGGGGATCGGGGACCGCCATCTGCATAAT
ATCATGCTCTGTCCTGACGGCCACCTTTTTCATATTGATTTCGGCTTCAT
TCTGGGGAAAGATCCCAAGCCTACCCCGTTGCTTGGGCCATTCCGACTCT
CATTATCTATGGtagaagggatgggggggaaagagcatGAGAACTTTAAG
CGCTTTAAGCAGCTGTGCACGGTGACTTTCCAATGTTTGCGCCGACATGC
TTCTCTCATAATATGGGTTGTTGGTTTGATGGTTGATGCGGGCCTGAAAG
ATCTAGGAGGAGCAGCACACGTCGCACGGAGCTCGGGCATTCGTGAAGGT
CAGAAGAATTGCTCAAACACTTCTTCGAACGAAGAATTTGGTGGTCGGTC
TTGTGCTGGTAGCAGAAGCGCCTTCAAGCGACTTGGAAGCCGTCTTCTTG
AGAGCAGCAGAGGAAAATCTACGCAAACTGTGGACGACTCCAGAAGTGGC
GCCATgtccgggggagggaatgcaGACATCGACATGATGGCTGTCgcccc
tccgtctttccaAGAGAGCCTGCACGTTGTCCCACCACACCACATCGAGG
CTTCTCAGAGTCTGCGTAAGATGGAGTCTCGCTTTCGACTGGATCTGACA
GACGATGAGGCCGAGAAGCACTTTGATGTGTTAGTCCACAAAGCAATAGG
TGCGTTGGCTCCACAAGTGATAGAGGCCCTCCATAATCTTGCACTCAAGA
CCAAATAA

Synonyms

Publications