rna4119, rna4119 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4119
Unique Name	rna4119
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2056
Alignment location	CM002462.1:907021..909459 +

Link to JBrowse

Properties


Property Name	Value
Product	dienoyl- reductase
Orig transcript id	gnl\|cribi\|Naga_100084g20.1567.mrna
Orig protein id	gnl\|cribi\|Naga_100084g20.1567
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:907021..909459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100084g20	gene3964	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4119	rna4119-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26559.1	cds4109	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:907021..909459+
coding sequence from alignment at CM002462.1:907021..909459+

mRNA sequence

>rna4119 ID=rna4119|Name=rna4119|organism=Nannochloropsis gaditana|type=mRNA|length=2056bp
TGGAACAAAAGAACAAAAGAAAGCATTTCAATATGGTATAGCTACATTGG
AGCGTGTATTCCTGCGAAGAAGCGCCTTTAGTCAGCAAGTTGGACTTGCT
GCCACTGCGAATGCTTCAACTCACAACAGTACGTATCATTGACTACGACC
ATCATTCTCTGGGTTACAAAATTGGCATCATGGGATTTTTATTTTCCCAG
CGCCGGCGCTATGTGCTACTCGCAGCCGGGTTGCTCACTTTTCTGGCTAG
TGCTTACGTCGCGATGAAAAAAAACAGCAAAAAGAAAAAGTATTTAGAAT
ATTGCGCCTTGAAGCTACGCCCGCAAGAGTCAGAGAAGGAAGAGGAACCG
CAATCACTCTGCCATGAAGAAATCAAGAGGGATTTGGCGTGTCAAGGCCT
GACTGCTGTACCCGCAGAGGTATTCCAAATGCGCAGCCTTCGGATCCTCA
ATCTGATGGGCAACTCCTTGACATTCCTCCCGTCTGAGATCGGTCAGCTC
TCACAGCTAGAAATATTGGGCCTAAAAGACAATCGACTCACAGCCTTGCC
AGCCTCCATCGGCGACCTGACGGGCCTTGTGGCGCTATACGTCACGAACA
ACGGACTCACAAATTTGCCTCCCAGCATCGGTAGACTCGTGAATCTCCGC
AAGTTTCAAGCATCGTTCAATGATTTGCAAGCCTTGCCGGAGGAAATGGG
GAACATGCGCTCTTTGGAACTCTTTCGTGCCGCTGGGAATCCGAAGTTGC
TCTCTATCCCTGTCTCCCTCGCTCGAGCACCGTCCCTCACATGGCTCTCA
CTGGGCGGCTCCAAATTCTGCGACGCGTTTTCCCGCAACACTTTAGGCCC
TCCAGAAAAGGATGGAGCACAGTGGTGGGCCATGGAAGGTCATCGCGGCG
GCAGAGGTGCTTGCGCAAGAGGGAGGAGCATCGATCATGACACAAGTAAT
ACCACGACTGAGTGTACCGGCGGCCGCTACATCGAGGTTCCCCCCTCGAT
ACCGCGAAAAACTTTGCAACTTGAGCGAAAACTGGGTGATGGAGCGTCGG
GAGAAGTGTTCTTGTCGGAGTGGGAGAACGGTACCGCCGCCGCTCTTTCC
GCTTCCTCCGCGTCCTGGAAAAGGAGGCTTACCCCTCAAAAAAAGAAGAA
AGCCAAGGAGCAGGTGGCCGTGAAGATCTTCCGTCATGACGTCTCGCCGG
ATGGGCGGGCGATCGATGAATTGGAAGTCCTGTGCCTTCTGGAGCACCCA
AACTTAAGCAAAGCGCGGGCTCTAGTGGTGGAAGACGAAGGGGAGGCTGG
GCGGGGGGGGCTAAGGAGCGGCACGGAGGGATTGCGCCCCATCGGGGTTG
TTATGGACCTTGTCCCCGGTCAGGCCATGGCTGCCAAACCGGATCACACC
AGCATGCTCCGGTGTCGATGGGAGGAAGGACGGCTGTACTCCCATGCGGT
AGTTCTTCGCATAGCCCACAATCTTGCCGCAGCTCTGATGCATCTCCACG
CCAAGGGGATCTTTCACGGTGACGTGTACGCGCATAATTGTGTGGTGGAT
GAGGAGGGTAACACTACCCTATTGGATTACGGCGCTGCCTTTTTGTACAG
CGTGGGGGAGGGAGGCGGCAGAGAGGAGGGCATGGAGGGTCTAGATTTGG
AAAAGCTGGAGGTGCGAGCCTTTGGGCTGCTTCTAGCGGATTTGCTTCCT
CGGCTGGATGCACAAGAGGGCGTACAGAGAGTAAGCTTCCCACAGAAGGA
GGAGAAAAGGCGAAGGGCGTCGTCCCCCTTCGGTTCCCTCGGTCGTTCCT
CTTCGTCGACCAGCCCCACCGCCCCACCGTCTGTCTCGTCCTCAGCCGCA
CTAGAATTCATGCAAGACCTGGTTGAGACATGTCTCTGGGACCAAGTGGA
CGCTCGCCCCACTTTTGCCTCTTTGTATGCTCGTTTGTCTTCCTTTGTGG
CCATGGCGTGACCCCAACAGCGGTGGCGGGTTTCCGAGGTCGGGGATTGA
CCGGATGGTCGCTATGTTAATATCAACGGAGAGGAATACTTTCGCGTGCA
TAGAAA

protein sequence of rna4119

>rna4119-protein ID=rna4119-protein|Name=rna4119|organism=Nannochloropsis gaditana|type=polypeptide|length=716bp
MAQQFAHVFQPLKLKSGATLRNRIVMGSMHVGLEDGGVIGGGLHKLGAFY
AERAKHQVGLIVTGGIAPNRQGKLSPFAAKLTNPLEVRAHRDVTSAVHNA
HPEAKIAMQILHAGRYAYHPFLVGPSAIKAPIGMYSPRALTEAEVERTIQ
DYAHCASRAREAGYDGVEIMGSEGYLINQFLVEHTNKRTGAWGGPYENRM
RFPVEIVKAVRAAVGEDFIIIFRLSMLDLIPAGSAWEEVVTLAQALEAAG
ATIINTGIGWHEARIPTIATCVPRAGYAWVTKKLKETGVLGVPLCTTNRI
NMPATAERVLADGNADLVSMARPFLADPAILSKAAEGRVEEINTCIACNQ
ACLDHTFKGQRASCLVNPRAGYETELHLLPVSPGSKMRVAVVGAGPAGLA
CATAAAERGHAVTLFEKADEIGGQFNMAKVIPGKEEFHETIRYFSHRLKL
LQVDVRLNSPATAEDLAAEGFDRVVMATGVLPRPVKIPGCEHPKVLSYVD
VLRGRKEVGKRVAIIGAGGIGFDVAEYLLHDPSLPPASVNVGKFLKEWRI
DGDNKERGGLLEKEAHDPAFREIYLLQRKKGKMGGGLGKTTGWIHRVSLK
KGGVHMVTGVEYLKIDDEGLHLKLKSSGETKVLNVDTIVTCAGQEPLREL
QAPLTAAGLGVFRIGGAEMAAELDAKRAIDQGTRLAACLEKAKPGEVFSA
PVSWEAKVMSKLGFMK

mRNA from alignment at CM002462.1:907021..909459+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4119 ID=rna4119|Name=rna4119|organism=Nannochloropsis gaditana|type=mRNA|length=2439bp|location=Sequence derived from alignment at CM002462.1:907021..909459+ (Nannochloropsis gaditana)
ATGGCGCAGCAATTTGCCCACGTTTTTCAGCCTTTAAAGCTCAAGTCTGG
GGCCACACTTCGTAATCGTATTGTCATGGGTAAGTGTATCTTATTTTGCT
TCGGCCGAGACAATCGATCCCTTTCCacacctttcccctcccccctcgac
gCCTGATCAAATCCATATTCGATTTCTCTTGAAATCATCATCGATACCCA
GACACAATTGTCATTCTCCATCTTTGGTGGTTGTCCTCACGTTTCTTCGC
TTTAAATCTGGTCCCTTTCATATCTGCGGTCTGTGCTCCCTCCGTTCATC
TCCTTTACCTGCACATGGACTTACATCCTCACCAACTTATTTGTGATACT
ACCTTGCAACACGTCAGGATCCATGCACGTGGGTCTGGAAGATGGCGGCG
TTATAGGGGGAGGGCTGCACAAACTGGGCGCTTTCTATGCTGAACGTGCA
AAGCACCAAGTCGGACTGATAGTTACGGGCGGCATTGCCCCGAACCGTCA
AGGAAAGCTCTCTCCTTTCGCAGCCAAGCTGACAAACCCTTTGGAGGTAC
GAGCCCACCGGGACGTGACCAGTGCCGTGCATAACGCCCATCCTGAAGCG
AAGATTGCCATGCAAATCTTACACGCCGGCCGCTATGCTTATCACCCCTT
CTTGGTGGGGCCGAGCGCCATTAAAGCGCCGATCGGCATGTATTCCCCAC
GGGCTCTGACCGAGGCGGAGGTCGAGCGGACCATTCAGGACTACGCGCAC
TGTGCCAGCCGGGCCCGGGAAGCCGGTTACGACGGCGTGGAGATCATGGG
CTCCGAGGGCTACCTGATCAATCAGTTTTTGGTGGAGCACACCAACAAGA
GGACAGGTGCCTGGGGAGGCCCCTACGAAAACAGAATGCGCTTCCCCGTG
GAGATTGTCAAGGCCGTCCGAGCGGCCGTGGGAGAAGATTTCATCATCAT
TTTCCGCCTGAGCATGCTGGACCTGATCCCGGCGGGCtcggcgtgggagg
aagtggtgacCTTGGCCCAAgccctggaggccgccgGTGCGACGATCATC
AATACAGGGATCGGCTGGCACGAGGCGCGGATCCCCACCATTGCCACCTG
CGTCCCGCGCGCAGGGTATGCCTGGGTGACGAAGAAATTGAAGGAAACGG
GGGTGTTGGGGGTTCCTCTCTGCACCACGAACCGGATCAATATGCCCGCC
ACGGCCGAGAGGGTACTGGCCGACGGCAACGCCGACCTGGTCTCCATGGC
ACGACCCTTTTTGGCGGACCCCGCCATCTTGAGTAAAGCCGCAGAGGGGC
GCGTGGAGGAAATCAACACGTGCATTGCCTGCAACCAGGCTTGCCTTGAC
CACACGTTCAAGGGACAGCGTGCCAGCTGTCTGGTCAACCCTCGGGCGGG
GTACGAGACGGAACTGCACCTACTTCCCGTATCTCCTGGGAGTAAGATGA
GGGTGGctgtggtgggggcggggccggcaGGATTGGCCTGcgcgacggcg
gcggcggagaggggcCACGCGGTGACGCTGTTTGAGAAAGCAGATGAGAT
CGGCGGGCAGTTCAATATGGCGAAAGTCATCCCCGGCAAGGAGGAATTTC
ACGAGACGATACGTTACTTTTCCCATCGACTGAAGCTTCTTCAAGTCGAT
GTGCGTCTGAACTCGCCTGCTACCGCGGAGGACTTGGCGGCCGAGGGGTT
CGACCGGGTCGTGATGGCCACGGgggtcctcccccgcccggtcAAAATAC
CCGGATGTGAACATCCCAAGGTTCTTTCGTACGTGGACGTGTTGaggggc
agaaaggaggtggggaagcgCGTGGCCATTATAGGCGCCGGTGGCATTGG
GTTTGACGTGGCGGAATATTTGCTGCATGaccccagcctccccccggcca
gCGTAAATGTGGGCAAGTTTTTGAAGGAATGGAGAATCGATGGGGACaac
aaggaaaggggcgggCTGCTTGAAAAGGAGGCCCATGACCCGGCCTTTCG
AGAGATCTACCTCCTGCAACGGAAGAAAGGCaaaatggggggggggctgg
ggaAAACAACTGGGTGGATCCACCGCGTATCCttgaagaaaggaggcgtG
CACATGGTCACGGGCGTGGAGTATCTGAAGATAGATGATGAGGGCCTCCA
TCTTAAGCTCAAGAGCTCTGGAGAGACCAAGGTGCTGAACGTAGACACCA
TCGTCACGTGCGCGGGTCAAGAGCCCTTGCGGGAGTTGCAAGCCCCCCTG
ACGGCAGCCGGATTGGGGGTGTTTAGAATTGGGGGTGCAGAGATGGCAGC
AGAGCTGGACGCAAAGAGAGCAATAGACCAGGGAACCAGGCTTGCGGCGT
GCCTCGAAAAAGCGAAACCGGGAGAAGTATTCTCGGCACCTGTGTCGTGG
GAGGCGAAGGTCATGTCCAAATTGGGTTTCATGAAATAG

Coding sequence (CDS) from alignment at CM002462.1:907021..909459+

>rna4119 ID=rna4119|Name=rna4119|organism=Nannochloropsis gaditana|type=CDS|length=4302bp|location=Sequence derived from alignment at CM002462.1:907021..909459+ (Nannochloropsis gaditana)
ATGGCGCAGCAATTTGCCCACGTTTTTCAGCCTTTAAAGCTCAAGTCTGG
GGCCACACTTCGTAATCGTATTGTCATGGGATCCATGCACGTGGGTCTGG
AAGATGGCGGCGTTATAGGGGGAGGGCTGCACAAACTGGGCGCTTTCTAT
GCTGAACGTGCAAAGCACCAAGTCGGACTGATAGTTACGGGCGGCATTGC
CCCGAACCGTCAAGGAAAGCTCTCTCCTTTCGCAGCCAAGCTGACAAACC
CTTTGGAGGTACGAGCCCACCGGGACGTGACCAGTGCCGTGCATAACGCC
CATCCTGAAGCGAAGATTGCCATGCAAATCTTACACGCCGGCCGCTATGC
TTATCACCCCTTCTTGGTGGGGCCGAGCGCCATTAAAGCGCCGATCGGCA
TGTATTCCCCACGGGCTCTGACCGAGGCGGAGGTCGAGCGGACCATTCAG
GACTACGCGCACTGTGCCAGCCGGGCCCGGGAAGCCGGTTACGACGGCGT
GGAGATCATGGGCTCCGAGGGCTACCTGATCAATCAGTTTTTGGTGGAGC
ACACCAACAAGAGGACAGGTGCCTGGGGAGGCCCCTACGAAAACAGAATG
CGCTTCCCCGTGGAGATTGTCAAGGCCGTCCGAGCGGCCGTGGGAGAAGA
TTTCATCATCATTTTCCGCCTGAGCATGCTGGACCTGATCCCGGCGGGCt
cggcgtgggaggaagtggtgacCTTGGCCCAAgccctggaggccgccgGT
GCGACGATCATCAATACAGGGATCGGCTGGCACGAGGCGCGGATCCCCAC
CATTGCCACCTGCGTCCCGCGCGCAGGGTATGCCTGGGTGACGAAGAAAT
TGAAGGAAACGGGGGTGTTGGGGGTTCCTCTCTGCACCACGAACCGGATC
AATATGCCCGCCACGGCCGAGAGGGTACTGGCCGACGGCAACGCCGACCT
GGTCTCCATGGCACGACCCTTTTTGGCGGACCCCGCCATCTTGAGTAAAG
CCGCAGAGGGGCGCGTGGAGGAAATCAACACGTGCATTGCCTGCAACCAG
GCTTGCCTTGACCACACGTTCAAGGGACAGCGTGCCAGCTGTCTGGTCAA
CCCTCGGGCGGGGTACGAGACGGAACTGCACCTACTTCCCGTATCTCCTG
GGAGTAAGATGAGGGTGGctgtggtgggggcggggccggcaGGATTGGCC
TGcgcgacggcggcggcggagaggggcCACGCGGTGACGCTGTTTGAGAA
AGCAGATGAGATCGGCGGGCAGTTCAATATGGCGAAAGTCATCCCCGGCA
AGGAGGAATTTCACGAGACGATACGTTACTTTTCCCATCGACTGAAGCTT
CTTCAAGTCGATGTGCGTCTGAACTCGCCTGCTACCGCGGAGGACTTGGC
GGCCGAGGGGTTCGACCGGGTCGTGATGGCCACGGgggtcctcccccgcc
cggtcAAAATACCCGGATGTGAACATCCCAAGGTTCTTTCGTACGTGGAC
GTGTTGaggggcagaaaggaggtggggaagcgCGTGGCCATTATAGGCGC
CGGTGGCATTGGGTTTGACGTGGCGGAATATTTGCTGCATGaccccagcc
tccccccggccagCGTAAATGTGGGCAAGTTTTTGAAGGAATGGAGAATC
GATGGGGACaacaaggaaaggggcgggCTGCTTGAAAAGGAGGCCCATGA
CCCGGCCTTTCGAGAGATCTACCTCCTGCAACGGAAGAAAGGCaaaatgg
ggggggggctggggaAAACAACTGGGTGGATCCACCGCGTATCCttgaag
aaaggaggcgtGCACATGGTCACGGGCGTGGAGTATCTGAAGATAGATGA
TGAGGGCCTCCATCTTAAGCTCAAGAGCTCTGGAGAGACCAAGGTGCTGA
ACGTAGACACCATCGTCACGTGCGCGGGTCAAGAGCCCTTGCGGGAGTTG
CAAGCCCCCCTGACGGCAGCCGGATTGGGGGTGTTTAGAATTGGGGGTGC
AGAGATGGCAGCAGAGCTGGACGCAAAGAGAGCAATAGACCAGGGAACCA
GGCTTGCGGCGTGCCTCGAAAAAGCGAAACCGGGAGAAGTATTCTCGGCA
CCTGTGTCGTGGGAGGCGAAGGTCATGTCCAAATTGGGTTTCATGAAATA
GATGGCGCAGCAATTTGCCCACGTTTTTCAGCCTTTAAAGCTCAAGTCTG
GGGCCACACTTCGTAATCGTATTGTCATGGGATCCATGCACGTGGGTCTG
GAAGATGGCGGCGTTATAGGGGGAGGGCTGCACAAACTGGGCGCTTTCTA
TGCTGAACGTGCAAAGCACCAAGTCGGACTGATAGTTACGGGCGGCATTG
CCCCGAACCGTCAAGGAAAGCTCTCTCCTTTCGCAGCCAAGCTGACAAAC
CCTTTGGAGGTACGAGCCCACCGGGACGTGACCAGTGCCGTGCATAACGC
CCATCCTGAAGCGAAGATTGCCATGCAAATCTTACACGCCGGCCGCTATG
CTTATCACCCCTTCTTGGTGGGGCCGAGCGCCATTAAAGCGCCGATCGGC
ATGTATTCCCCACGGGCTCTGACCGAGGCGGAGGTCGAGCGGACCATTCA
GGACTACGCGCACTGTGCCAGCCGGGCCCGGGAAGCCGGTTACGACGGCG
TGGAGATCATGGGCTCCGAGGGCTACCTGATCAATCAGTTTTTGGTGGAG
CACACCAACAAGAGGACAGGTGCCTGGGGAGGCCCCTACGAAAACAGAAT
GCGCTTCCCCGTGGAGATTGTCAAGGCCGTCCGAGCGGCCGTGGGAGAAG
ATTTCATCATCATTTTCCGCCTGAGCATGCTGGACCTGATCCCGGCGGGC
tcggcgtgggaggaagtggtgacCTTGGCCCAAgccctggaggccgccgG
TGCGACGATCATCAATACAGGGATCGGCTGGCACGAGGCGCGGATCCCCA
CCATTGCCACCTGCGTCCCGCGCGCAGGGTATGCCTGGGTGACGAAGAAA
TTGAAGGAAACGGGGGTGTTGGGGGTTCCTCTCTGCACCACGAACCGGAT
CAATATGCCCGCCACGGCCGAGAGGGTACTGGCCGACGGCAACGCCGACC
TGGTCTCCATGGCACGACCCTTTTTGGCGGACCCCGCCATCTTGAGTAAA
GCCGCAGAGGGGCGCGTGGAGGAAATCAACACGTGCATTGCCTGCAACCA
GGCTTGCCTTGACCACACGTTCAAGGGACAGCGTGCCAGCTGTCTGGTCA
ACCCTCGGGCGGGGTACGAGACGGAACTGCACCTACTTCCCGTATCTCCT
GGGAGTAAGATGAGGGTGGctgtggtgggggcggggccggcaGGATTGGC
CTGcgcgacggcggcggcggagaggggcCACGCGGTGACGCTGTTTGAGA
AAGCAGATGAGATCGGCGGGCAGTTCAATATGGCGAAAGTCATCCCCGGC
AAGGAGGAATTTCACGAGACGATACGTTACTTTTCCCATCGACTGAAGCT
TCTTCAAGTCGATGTGCGTCTGAACTCGCCTGCTACCGCGGAGGACTTGG
CGGCCGAGGGGTTCGACCGGGTCGTGATGGCCACGGgggtcctcccccgc
ccggtcAAAATACCCGGATGTGAACATCCCAAGGTTCTTTCGTACGTGGA
CGTGTTGaggggcagaaaggaggtggggaagcgCGTGGCCATTATAGGCG
CCGGTGGCATTGGGTTTGACGTGGCGGAATATTTGCTGCATGaccccagc
ctccccccggccagCGTAAATGTGGGCAAGTTTTTGAAGGAATGGAGAAT
CGATGGGGACaacaaggaaaggggcgggCTGCTTGAAAAGGAGGCCCATG
ACCCGGCCTTTCGAGAGATCTACCTCCTGCAACGGAAGAAAGGCaaaatg
gggggggggctggggaAAACAACTGGGTGGATCCACCGCGTATCCttgaa
gaaaggaggcgtGCACATGGTCACGGGCGTGGAGTATCTGAAGATAGATG
ATGAGGGCCTCCATCTTAAGCTCAAGAGCTCTGGAGAGACCAAGGTGCTG
AACGTAGACACCATCGTCACGTGCGCGGGTCAAGAGCCCTTGCGGGAGTT
GCAAGCCCCCCTGACGGCAGCCGGATTGGGGGTGTTTAGAATTGGGGGTG
CAGAGATGGCAGCAGAGCTGGACGCAAAGAGAGCAATAGACCAGGGAACC
AGGCTTGCGGCGTGCCTCGAAAAAGCGAAACCGGGAGAAGTATTCTCGGC
ACCTGTGTCGTGGGAGGCGAAGGTCATGTCCAAATTGGGTTTCATGAAAT
AG

Synonyms

Publications