rna4115, rna4115 (mRNA) Nannochloropsis gaditana

Overview
Namerna4115
Unique Namerna4115
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2867
Alignment locationCM002462.1:889929..891410 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100421g5.10769.mrna
Orig protein idgnl|cribi|Naga_100421g5.10769
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:889929..891410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100421g5gene3959Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4115rna4115-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26568.1cds4105Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4115 ID=rna4115|Name=rna4115|organism=Nannochloropsis gaditana|type=mRNA|length=2867bp
TGAACAGACAGGCTTGAATGGACCAAGCGCCGCCGTATTCCACCACCTTG
TCCCCAGACGACTTATCTGTGCTGTCGCTTCTTTGGGGCTCTTATTGGGA
TGGACAAGCACTCTCAGACAACGACACGCGCCTCACCGTGATAGCCTTGC
TCCGCAGTTTCTTCTTGAGTCCTGAAGGTCGACCAATGTTCGAGGTCGGC
ACGCGAGCGTACCGGGTGGAGCCAGGGGCTCCTTTAATCATCACGTTGGA
TTATCCCATGTTTGTTGCTCGCTTTCCCGCGACAGATTTCAGCAAGATGC
TCTATGAACAACCTGTTCAAACTCTCTCACTCATCGGCTTAGCTGCATCG
CTAGCGCTGGGTTTAGACCCCCGCCAGACCGGGGATTCTCAAGGTTTACA
GGCTCGTTTTGAGCACGTGGAGCCAGTAGCACCGATGGGAAGCTTGAAAA
GTGGCTTGGTGGGGCGGTTCGTGACGGTCAAGGGCACCGTCGCGCGCGCG
AGTGCCATCCGTCCTCTGGTTTTGGGGGCTGATTTTGAATGTTTCAAGTG
CGGCGTGCACATGCCCATGAAATTCACGGACGGGATATTCCAATGGCCAG
AATCCTGCCCCACTCTCCGGTGCCGGAACAAAAATTTTGAGCTGCGGCGA
GAGACGGCTGTGACGGTGGATTATCAGAAGATCAAGCTGCAAGAAATCGA
CGACGAAGGGGGGGAACCGGGGCGGATCCCACGGACGGTGGAAGTGGAGC
TTCGGGGAGACCTGGTGGATACGTGTGTACCGGGCGACGTGGTGGCGGTG
GCGGGCGTGGTCAAGTCGATCTCGGCCGAGGCAATGGCCAATCGCCGGAC
AGGGAGGGAGGGGAAGCACCAGTCGCTTTACCTCCTCTATGTCCAGGCGA
ACTCCGTGGCGAACAAACGGCAAGTGGAGCGACAGACGGATGAGGACATG
GAGCAAATGGAGGCCATGATGGACGGAGCGGCACGCGCGGCCGCTGCCTA
CGCCGGGGAAGAGGGAGGAGGGAGCGGGGAAGGAAGGGAGGGAGAGCTGG
CCAAAATCGAAGGGCATTTTCATCTCAAGCACTTGGGGGCCATCCGGGCC
ATAGCCACGGATCCGTACTGTTTCCACCTGCTGGTCGCCTCCCTCTGCCC
CCCCATCGTCGGACAAGAACTCGTCAAAGCGGGTCTCCTCCTTGTCCTGC
TGGGGGGCAGCAAGAGAACTTGCCCGTTGGCGGCGCGGACGCGGGTCCGG
ATCCGATCCGATCCCCACGTGCTCCTGGTGGGAGACCCCGGCTTGGGCAA
AAGCCAGCTCCTGCGGGCCTGCCACGACGCGGCCCCCCGCGCTGTCTACC
TGTGTGGCACGCTTGCGACCAACACGGGCTTGACCGTCACCTTGGTAAAC
GACGGGCGGGGCGATGTGGCCTTGGAGGCGGGGGCCCTGGTGCTCGCGGA
CCAAGGGATCTGCTGCATCGACGAGCTCGACAAACTGTCGTGCTCGTACC
ACGCCCTCTTAGAGGCGATGGAGCAGCAGCAGATTTCGATCGCCAAAAGC
GGCGTGGTCACCTCCTTGTCGGCGCGTTGCTCTGTCATCGCTGCCGCCAA
TCCGGTGGGAGGGCAGTACCATCGAGGGAAGACGGTCAGTGAGAACCTTA
AAATGAGCGGGGCTTTGTTCAGTCGCTTTGACCTGGTCTTTATCATGCTC
GACTGGGCCGACGACGAGCATGACGCCCGGGTTTCGGAGCAGGTTGTTCG
AGCACACGCACAGCGCCGTGGCCAGGGACGTAAAGGGTCACACTTGCCGG
TGCACAACTCGGGCACGGGCGGTAGGAAGCCTAGTTTGGAGGATTTGAAC
GACCGGGAGTCCCGGTCCTTGTCGCAACGACTGCGCATGGGCGTCGACGC
CGTGGGCGATGACCCTATCCCCAAGGAGCTCCTCCGCAAGTACATTGCGT
ACGCTCAAAAGTACGTCCATCCACGTATAACCCCACCGGCTGCCGCGGCC
CTCAAGGAGTTTTACATGCACATGCGTGCCGAAGCCCGTCTTCATCGTTC
ATGTCCCATTACCACGCGTCAATTGGAGAGCCTGATTCGTTTGGCACAGG
TAGGCGTCACGGAGGGAAGTATGCACTGCCTCAGGACCTCCAATACTCAA
TGCCTTTTCTTGTTTTCTCCTTACGAGTGCTATTTCTTGTTTTACCAATT
TATTTGTTTCTCTAAGGCCCGGGCCAAAGCAGAATTGCGCGAAGAGGTGA
CAGAAAATGACGCATTGGACGTGATCGAGATCATGCAAGAATCCTTGGAG
GCAGCTCAAACCACAGATGCGGGCGCAGTGATTGACTTTGCCCTCCAATC
AGGGAGCATGTCCCTTTCGAAACAAGTCAAGGCCTTTGTGTCGGCGCTGA
CAAAGGAGAGCCACTCGCGGGGTTCGAGTCTCTTCCCCCGGGCCGACCTG
GAGACATTGGCGGAGAAAAAGCTTCGACTGCAGATCGCGGATTTCGATCG
CTTCCTCGATGTCTTGAACAACGAGTGTTATCTTTTGAAAAAGGGTCCTC
GACTCTATCAGGTGATGACGAGTAATGTTGGTGGAGCATCACAAGCGTGA
AGGAGGGGGATACAGATGGTTCATAGCCAGCCATGAGACACTACGGTCAT
TACGAAGATTTGGAAACAAACAGAAGGGGAATCTATCTAGTTTAGTGTAC
ATAATATGATGTACAAAGCAGGGCAGTACTGGCGTGCCCTTCAAGAGAGA
TGATCGAACAGATGTCGTGAATGTATATACAGAAAGAGTGAAACCGTGGA
AAACGTTATGTACACTAAAAACAATCGGGAATGAGAAAGGAAAGCAATTA
CCAGTCCGAGCCGAAGC
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protein sequence of rna4115

>rna4115-protein ID=rna4115-protein|Name=rna4115|organism=Nannochloropsis gaditana|type=polypeptide|length=243bp
MAAAILRIYLFAMWVPWRRRINTAYPSCRVRSSFYSPPSSVTAEAHQETG
LTPTCISNRSNKTSVLRRTTPSLSSALAQAGICAKALLKSCISRHSAPRS
AVSRSTSHPSVPSLSACPNAARRAADRGSIRTCGETTFAGSASSGLLAPT
SPSLASVRDPSSPASTAPPSSSPSSFSASDKKSAREEEEVECLMLGLASN
SSPFPFPSPSSSSSFTSSSSTSSSFSPFPSPSSSSSGSLLCKL
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mRNA from alignment at CM002462.1:889929..891410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4115 ID=rna4115|Name=rna4115|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp|location=Sequence derived from alignment at CM002462.1:889929..891410+ (Nannochloropsis gaditana)
GGAGCACACGATCGCCAGAAATGAAAACCGTattatatatatacatatac
aaccctaaccctaacctcAGAACACGGTAGACTAGCAGACAATCGTAAAA
CTACAAGATCGATCGAATTAAATCTGTATTTGGGCTCGACGCCGGGCGCC
CTTGGTTGGCATCCTTTTGCGTTAAATTTGCCCGCTTCTGCTGTGCTCCC
ATGCTCCCACCCATTTCCACCCACCTTCACCTTCTTACACTTCGTCAGAG
AAAAATGGCCATTTTTCTCCGGGCTCCGAAGAACTCCGCAAGTGATTTCG
GTTGTGTGGGTCTATCTATATCGTGTTGTCCGGTCCTATCTCGGCGTTCT
CGGGCCACTCTGCAGTCCCTCTTATTTACGCcggacgggcgggagggggg
ccgggCTCGGTGTACATATGGCCCGATTAACCAGACTAGCCGCTACCGCC
GTAATTTTATAGCCAGTAAACGTCGTGAGACGCTGGTTGCTTGTTGAAAA
TATTGGAAACCAGCTTAAGTTATTTATTTCTTTGTGGTTCAGGTCGATCT
TGTCGCCATCACGCTGTTTTCTGACAGATTTTCATGAGAGCCTATTCTTC
TACGAGTTGCGCCTTACAATGTGTGCCCTTGTTGTGACTTTGTGTCCTCC
ATTCGTGCGCCTACTTGTGTGTGTAACGCTTCAATTCAATTACCTCTATT
CATGCAACTACCCGTGTGTGTAATGCTTTAACTCGTGCAAGAGGGCTTCA
ATGGCTGCAGCAATTTTGCGGATATATTTATTTGCGATGTGGGTGCCGTG
GCGTCGGCGAATAAACACCGCATACCCCTCCTGCCGTgtgcgctcctcct
tctactCTCCCCCGTCTTCTGTCACGGCTGAGGCCCATCAAGAGACCGGG
CTGACACCGACGTGCATCTCCAATCGATCTAACAAAACGTCCGTGCTCAG
ACGCACCACCccgtcgctttcctccgccttggcccaGGCAGGCATCTGCG
CTAAGGCGCTTTTGAAGTCCTGTATTTCCCGGCACAGCGCCCCTCGCAGC
GCGGTCAGTCGCTCCAcgtcccacccctccgtACCCTCTCTCAGCGCTTG
CCCCAACGCGGCCAGGCGCGCGGCGGACAGAGGAAGTATCCGGACCTGTG
GCGAGACCACTTTCGCCGGCTCGGCCTCTTCGGGCCTCTTGGCTCCCACC
TCGCCGTCGCTCGCCTCGGTTCGagacccctcctctcccgcctccaccgc
cccgccgtcctcctccccctcctccttctccgcttccGACAAAAAAAgtg
cgagagaggaagaggaagtggagtgCCTCATGCTGGGCTTggcctccaac
tcctccccctttcctttcccctccccctcctcctcctcctcgttcacctc
ctcctcgtccacctcctcctccttttccccctttccttccccctcctcct
cctcgtccggatCCCTCTTATGCAAGCTATAG
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Coding sequence (CDS) from alignment at CM002462.1:889929..891410+

>rna4115 ID=rna4115|Name=rna4115|organism=Nannochloropsis gaditana|type=CDS|length=732bp|location=Sequence derived from alignment at CM002462.1:889929..891410+ (Nannochloropsis gaditana)
ATGGCTGCAGCAATTTTGCGGATATATTTATTTGCGATGTGGGTGCCGTG
GCGTCGGCGAATAAACACCGCATACCCCTCCTGCCGTgtgcgctcctcct
tctactCTCCCCCGTCTTCTGTCACGGCTGAGGCCCATCAAGAGACCGGG
CTGACACCGACGTGCATCTCCAATCGATCTAACAAAACGTCCGTGCTCAG
ACGCACCACCccgtcgctttcctccgccttggcccaGGCAGGCATCTGCG
CTAAGGCGCTTTTGAAGTCCTGTATTTCCCGGCACAGCGCCCCTCGCAGC
GCGGTCAGTCGCTCCAcgtcccacccctccgtACCCTCTCTCAGCGCTTG
CCCCAACGCGGCCAGGCGCGCGGCGGACAGAGGAAGTATCCGGACCTGTG
GCGAGACCACTTTCGCCGGCTCGGCCTCTTCGGGCCTCTTGGCTCCCACC
TCGCCGTCGCTCGCCTCGGTTCGagacccctcctctcccgcctccaccgc
cccgccgtcctcctccccctcctccttctccgcttccGACAAAAAAAgtg
cgagagaggaagaggaagtggagtgCCTCATGCTGGGCTTggcctccaac
tcctccccctttcctttcccctccccctcctcctcctcctcgttcacctc
ctcctcgtccacctcctcctccttttccccctttccttccccctcctcct
cctcgtccggatCCCTCTTATGCAAGCTATAG
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Synonyms
Publications