rna4111, rna4111 (mRNA) Nannochloropsis gaditana

Overview
Namerna4111
Unique Namerna4111
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2550
Alignment locationCM002462.1:879356..880455 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g1.8083.mrna
Orig protein idgnl|cribi|Naga_100001g1.8083
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:879356..880455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g1gene3955Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4111rna4111-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26572.1cds4101Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4111 ID=rna4111|Name=rna4111|organism=Nannochloropsis gaditana|type=mRNA|length=2550bp
ATGGAGAGCATAAAAGGATGGGACACGAGGGTGTTCGACGAGAAGAAAGA
GAATTTGGTCTTTTTTGCGTGCGTCTGGTGCACCGCAAAGATGGAAGACA
CCACCATTTATCAGCAAACGGGGGGATGTCAACCTGAGGACGTACTTGCC
ACTGCCGTGGTCGCTGGAGATCTCGAAGACACATCTCCTACCGAATCTAA
TCATTCGACCACGCAAACGGGCACGAAGCAGCGGACACACGCTCCTCACA
CTCACAAGTATCGGCATCTGTCCTTCCCTCATTCGCAATCTTTGGAATGT
ATATCTCAGACTGAATCGACGCTGGGGAAGGTTGGTGTCAGGAGCAACTT
GACCAGCACCGAAGTGGAGTGTAGCCGCCCTTACTCCTTTCACCACCCAC
CTGAAACGAGTACAAATACCCAACGGCCTTACAAGAGTGGCAGTCTCAGC
AACGGGAGCGCCATCACGCCAGAGAGCCTGACCTTGGCCTATCTGGAACT
TCTACGCCGGGCATCCCACCCATCCGAGAGCGAGGCCTCAACACCCCCTT
GCGACAGCGAAGATTTAGGCGTCCCTGTCCCAGCTGACGAATCAAGGAGA
CACATGGGCGCGAACGGCAGCCCGAAGAAATCCTTGTTGATGAAAGCTTT
GTGGACGGCGGCGACGGGGATGGGATCCACGACGTCTGCCCCCCCGCCGG
GGGCCACCACGCCCGAGAAAGCGGACGCGAGCACCGACGACGAAGCGGAC
GAGGACGAGGAAGAGGAGGAGGCCAGGATCATACCCGCATGTGTGGAGGA
GGGCCCCGTCTTCGACGAGAAGCGAGGCTCCTACCTGGCTCTCCTCAGCA
CCAGCCTTTGGCGGACCCAGCAGGCGTTGGCAGGCTCCCGCCTAGTCCGC
CGCTGCTACCCTAGAAAGTGGGTCGAAGAGCCCCACCTGCTTCGGGTGTG
GGAGGGACGAAAGAGGGGCGTGGTGGAGAGCAGGGGTCCCCTCGGGGACA
CTAGCAGGGAGGACCAGGACACGGGGGCGGTGGGGCGAGGCGGTGAGGAG
GCTTGGGCCCAGAGCCCGTGGAGGGAGGCCAAGGGCCTCGCAGGGGCTTC
CATACCGATCCTGAGCCGAGTTCAAGCCTGCAGCAGGGAATTGGCGGGGA
CGGCGTGGGTGCGTGGGAGGGAAGGCCGGTCCGTGAGGAAGGTGCTGGTG
GTGCTCTTCCTCCTCCTCGGCTTGGGCCTGTGGGCGCGGCAGGGACCCTT
GCCCCTCCGTGCGTGGGCAACGGTCGTGCCAAAGGAGGAGGGATGGGAGG
GAGGGGCGGGGTCGGGCGCGAGGGGATGGTCGAGGGAGGGGAAGAATGCC
CCAGAGGTCGTGGCGTGGACGATGCCGTCGTCGGAGGAGCCAGGTGTCCC
GCCCGGGGACTGGGACGGGCGGACCCAAGCAGATGATGAATTTGGAGTCG
GGGGTAGTGGGGAGGAGGGAGAAGAAAAGAAAGGCGGTGGTTCGGGGGAG
AGCGAGGTCCTGTTGCAGGGGAAAGCGGGGCAGGTGGACGAGGGGGGAAG
TCTGGTGGAGATCGAGTCTCTGGCGTCCAGGACGGCCGATGAGAGAGCAG
GAGCGAAGGCAGCGGCCCCTAGTAGGACGGATGGGAAGGTCAAGAGCGAG
GGTCGGGGCCACGGACATGCCAAGGACGGCACGAGGGACGGCGGGCGGGG
GGAAGAGGTCTGTGTGAGCGAGGGCAATCCCATCCCCGCCCTCCTCGAAT
TCGCCCCAGCCCTGCCTGCCGACACTTCCGCCCCGGGTCCACACGGGTCT
GCCCCTTCTTCCCCCTTCCCTCTTCCGGTGAGCGACCCGCACCCCACCCT
CCCCGACGAAGCCAAGCAGGTGGTCAGGGCGGTCCCCCCATCGCGAGGCC
AGAGCCCGCGTCGAGAGGGCGTGGGCCTGTCGGGGGCGGCCGGTTTGGGA
GGGTGGGGCGCCGGACGGGGGGAGCTGACGCGCCTGTACGACCGAGGATT
CATGGCGGAGGACTTGTCTTTGATGGAGGTGGTGGCGGTCTTCGGTTTGG
AGTACGCGCACCATCTCCTGCGCCGGCACCGAGACGACCTCCGGGCCTGG
GGCCAAGGCTGGTGCCTGCCCGGCCATGCCTGGAGGGGCGGGTCCTGCAA
GCCCAACGCCGTGGTGCGTGTTGCCCTTTGTGTATGGGACGTGGCCAGGG
CCAAAGCCCGGCAAGTGCATGACTTGGCTTTCGAGTGGGGGGCTGTAGCG
GCGCAGCAAGTCCAGCTTTCCTTGCCAGCGCCTCCCGGCCCCGCGGAAGC
CGAGGCTGTGGCCCTAGCAGCCGGCGCGTGGATGCGACGTTGGCAGAAAG
CAGTGACAGCATCGCTTGTGTGCACCATCAAGCGATCGTCCACGTTTTTG
CAAGGATGTAACGCTGATAGTTATCTCGTGTGCCGTTCGCGTGTGTGCAT
ATCAATAGACAAAATAGGGACCGGGAAGATGTCTTCCTCTGATGACATTG
AAAGTAGACCTCGGCGTAGCAGCCTCTTAGTGAGGACCATGTGTGCTTGA
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protein sequence of rna4111

>rna4111-protein ID=rna4111-protein|Name=rna4111|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MPPSEHSTSSGLRRSPLDIAEQIRLVLDQGTSHAQLQAIKVQLQNDVAEE
CRRIEDPEEHNRLLMLSLEDVHARVAALHQVQAILRAFLLRIRENLSFWD
DEADYEGREGGATALLQQQEGFEALVAESKALIGGYSCLLFVRRFVDGDD
NIWHHTVDSLSMPFLPLSHASGGVRGREGEYFAGPDHRYGQDFATVRGQV
LHHVWGLDETTPEDLPRHRAPLESLLGAWWRPLTPGRRGRSGRHPPPCRL
LSVKDALWVPWRVLTARLLRGPETEDEEDMGLLDPGRKAGFLARASAEAS
HLQLLTLYALVDACWVRDKGQ
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mRNA from alignment at CM002462.1:879356..880455+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4111 ID=rna4111|Name=rna4111|organism=Nannochloropsis gaditana|type=mRNA|length=1100bp|location=Sequence derived from alignment at CM002462.1:879356..880455+ (Nannochloropsis gaditana)
ACTGAACAACCATGCATGGCCCAATCCACATTTCCTGACGCGCTAACAGG
GTCCTTAGAGCTTGAAAGGGCTTCCGAGCGTCAAGTCTCTCTCAAGGGTG
CTGCAATCCAGCACACGTCGCGCGCGTGCCATTCCCATGCCCCCGTCTGA
GCATTCTACCTCCTCAGGTCTCCGTCGTTCTCCCCTCGACATTGCTGAGC
AAATCCGTCTCGTCCTGGACCAAGGCACCAGCCATGCACAGCTGCAAGCC
ATTAAAGTACAACTGCAGAATGATGTGGCTGAAGAGTGTCGTCGCATCGA
AGACCCGGAAGAGCACAACCGTCTGCTTATGCTTTcgctggaggacgtgc
aTGCACGCGTTGCGGCATTGCACCAGGTCCAAGCAATCTTACGGGCGTTT
TTGCTGCGGATCCGCGAAAATTTGAGTTTTTGGGATGACGAAGCAGATTA
cgaaggacgggaagggggtgCGACGGCTTTGCTCCAGCAACAAGAAGGGT
TCGAAGCCTTGGTGGCGGAGTCCAAGGCCCTGATAGGAGGGTATTCCTGC
CTATTGTTCGTTCGCAGGTTCGTGGATGGCGACGACAACATCTGGCACCA
CACCGTGGACAGCTTGTCCATGCCATTTCTTCCACTCAGCCATGCGTCGG
GGGGAgtgaggggcagggaaggcgagtACTTCGCAGGCCCCGACCACAGG
TACGGCCAAGACTTCGCCACGGTACGAGGGCAAGTGCTGCACCACGTGTG
GGGATTGGACGAAACCACGCCCGAAGACCTCCCACGGCACCGCGCCCCCC
TTGAGTCGCTGTTGGgcgcctggtggaggcccttgaCGCCCGGtcgcagg
gggaggagtggcCGCCACCCCCCCCCGTGTCGTTTGCTTTCCGTGAAAGA
CGCCCTTTGGGTCCCCTGGCGCGTGCTCACGGCCCGCTTACTCCGTGGCC
CCGAgacagaggacgaggaggacatgggcctgCTCGAccccgggaggaag
gcgggttTCCTGGCGCGGGCCTCGGCGGAAGCCAGCCACCTTCAGCTTCT
GACCCTCTACGCCCTGGTCGACGCCTGTTGGGTCCGGGACAAGGGGCAGA
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Coding sequence (CDS) from alignment at CM002462.1:879356..880455+

>rna4111 ID=rna4111|Name=rna4111|organism=Nannochloropsis gaditana|type=CDS|length=964bp|location=Sequence derived from alignment at CM002462.1:879356..880455+ (Nannochloropsis gaditana)
ATGCCCCCGTCTGAGCATTCTACCTCCTCAGGTCTCCGTCGTTCTCCCCT
CGACATTGCTGAGCAAATCCGTCTCGTCCTGGACCAAGGCACCAGCCATG
CACAGCTGCAAGCCATTAAAGTACAACTGCAGAATGATGTGGCTGAAGAG
TGTCGTCGCATCGAAGACCCGGAAGAGCACAACCGTCTGCTTATGCTTTc
gctggaggacgtgcaTGCACGCGTTGCGGCATTGCACCAGGTCCAAGCAA
TCTTACGGGCGTTTTTGCTGCGGATCCGCGAAAATTTGAGTTTTTGGGAT
GACGAAGCAGATTAcgaaggacgggaagggggtgCGACGGCTTTGCTCCA
GCAACAAGAAGGGTTCGAAGCCTTGGTGGCGGAGTCCAAGGCCCTGATAG
GAGGGTATTCCTGCCTATTGTTCGTTCGCAGGTTCGTGGATGGCGACGAC
AACATCTGGCACCACACCGTGGACAGCTTGTCCATGCCATTTCTTCCACT
CAGCCATGCGTCGGGGGGAgtgaggggcagggaaggcgagtACTTCGCAG
GCCCCGACCACAGGTACGGCCAAGACTTCGCCACGGTACGAGGGCAAGTG
CTGCACCACGTGTGGGGATTGGACGAAACCACGCCCGAAGACCTCCCACG
GCACCGCGCCCCCCTTGAGTCGCTGTTGGgcgcctggtggaggcccttga
CGCCCGGtcgcagggggaggagtggcCGCCACCCCCCCCCGTGTCGTTTG
CTTTCCGTGAAAGACGCCCTTTGGGTCCCCTGGCGCGTGCTCACGGCCCG
CTTACTCCGTGGCCCCGAgacagaggacgaggaggacatgggcctgCTCG
AccccgggaggaaggcgggttTCCTGGCGCGGGCCTCGGCGGAAGCCAGC
CACCTTCAGCTTCTGACCCTCTACGCCCTGGTCGACGCCTGTTGGGTCCG
GGACAAGGGGCAGA
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Synonyms
Publications