rna41, rna41 (mRNA) Nannochloropsis gaditana

Overview
Namerna41
Unique Namerna41
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length565
Alignment locationCM002455.1:115841..117588 -

Link to JBrowse

Properties
Property NameValue
Productprotein kinase domain containing protein
Orig transcript idgnl|cribi|Naga_100836g1.8065.mrna
Orig protein idgnl|cribi|Naga_100836g1.8065
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:115841..117588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100836g1gene39Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30631.1cds41Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna41rna41-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna41 ID=rna41|Name=rna41|organism=Nannochloropsis gaditana|type=mRNA|length=565bp
CCTCTCTTCGCCACCACCCGCTCCTCGCCCCCTCCCTCCTTTCCTCCCTC
CCCCCCGCCCTTCGGCCCCTCCTTCTCTTCCCCTTCCTCCTCCCGCCCCA
CCTCCCTCCCTCTCGCCAGCCCTCCCTTCTTCTCTCCCGATGGCTTGCGG
GGGTAACGCCCTCCCTCCTCCCCCGACGGACAGAATCTCCCGCGTCAGGA
TAAGCGGGTCTGGTCGTTTCCAAGAGGGAGAGGCGAGGGTCAGGTGTGGG
AGATCCAAAGGGCTTCTCCTATGCAGGGGGGGGTTGTGGGAGGGAGGGAG
GGAAAAGGGAAGGAAAGGAGGAGGAACAGGGAAGGGAGGAAGGTTGGAGG
AGGAGGAAGAGAAAGGATAGAGGATAGGATGGACAGAAGAGGTGCACGGA
CCCCCGCCCAGCTGGCAAATACAAAAGGAAATTCAAAATGATAGCCATCT
TTCAAAAAAATTAAACTTCAATTTTTGGGGCCCCGCAACGCCGGAGAGTT
GCCTCAGCGCTTGCCCCGGTGCCTTTACCTCTGCGCTTCACGGACGTGGC
TTTCGTGCGTCGCTC
back to top

protein sequence of rna41

>rna41-protein ID=rna41-protein|Name=rna41|organism=Nannochloropsis gaditana|type=polypeptide|length=564bp
MGEKDNTTGALLSASLKSPAMFRGAEAAGSLRRQRASSTSFKSSAHNESS
PAKINLPSSSLSAFEVDDRLGKGAFGVVHRARRKQDGKWYVIKTVSLGEM
EEGARSEAVNEVHILASISSPYVVKYYDSFVEREELHIVMEYCNRGDLQR
IIHKLKRENCRSIAEEKIWAIFVQVALGLHHLHSRQILHRDMKAANVFIH
KDEASGRQQVKIGDLGVAKLLNTKTTLATTMVGTPYYLSPELCRSQAYDA
RSDVWSLGVLLYQCCTLKLPFDADNPYLLMTKIIEGEYEALSSKYLSTSL
VKLVERLLTADPQRRPSLQNILSLSDVQAKCLALGHALPPSVPPVPSSPP
PSPSPAAGISVGVVTGRRGSTTTPKPPELASSTRPTSSSQHQVREGRERL
PSLVSSPPRQTLPLAWTGADHDSPNPQLYPENAENPTSPSPTWTRGRQPS
RLEASQELPAGTARGSGRVPALALPPPLIISPHSSLDRDPFSPSPSHRHH
RPSTLTPASSTSPPPPPLSSSTSSARARLSSRNSFGRSTDLPAHRKALSS
ISDSFAPELVGLFP
back to top

mRNA from alignment at CM002455.1:115841..117588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna41 ID=rna41|Name=rna41|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp|location=Sequence derived from alignment at CM002455.1:115841..117588- (Nannochloropsis gaditana)
AATTTCAACAGGATTAAATATAGAATGCAGGACATAGAAACGACGACCAT
TTAGCATGGGGGAGAAAGACAACACCACCGGGGCACTTCTGTCAGCAAGT
CTCAAGTCTCCAGCCATGTTCCGAGGTGCCGAGGCCGCGGGCAGCTTACG
GCGCCAAAGGGCTTCTTCGACGTCTTTCAAGAGCTCCGCTCATAATGAAT
CATCACCTGCAAAAATAAATTTACCGTCATCGTCCTTATCTGCGTTTGAG
GTGGATGATCGGCTGGGAAAAGGAGCCTTTGGCGTCGTACATCGGGCTCG
GCGGAAGCAGGACGGGAAATGGTACGTCATCAAAACCGTTTCCCTGGGCG
AAATGGAGGAGGGGGCCCGCTCGGAGGCAGTAAATGAAGTGCATATCCTT
GCCTCCATATCCTCCCCGTACGTGGTCAAATACTACGACTCATTCGTAGA
GCGGGAAGAACTGCACATTGTAATGGAATACTGCAATCGCGGGGACCTTC
AACGCATCATCCACAAGCTGAAACGGGAAAATTGCCGAAGCATTGCCGAA
GAAAAAATATGGGCCATCTTTGTTCAGGTGGCCCTGGGCCTGCACCACCT
CCACTCCCGGCAGATCTTGCACAGGGACATGAAAGCGGCCAATGTCTTCA
TCCACAAGGACGAAGCCAGCGGGCGCCAGCAGGTCAAAATCGGGGATTTG
GGCGTGGCAAAGCTGCTCAACACGAAAACCACCCTGGCCACTACCATGGT
CGGGACCCCGTACTACCTTTCCCCGGAGCTCTGCCGGTCTCAGGCCTACG
ACGCGCGGTCGGACGTCTGGTCCCTTGGTGTCCTCCTCTATCAATGTTGC
ACCCTGAAGCTCCCTTTCGACGCAGACAACCCATACTTGCTCATGACCAA
GATCATCGAGGGGGAGTACGAAGCCCTTTCCTCCAAATATCTGAGCACGT
CCCTGGTCAAGCTGGTGGAACGGCTCTTAACGGCCGATCCGCAACGGCGG
CCTTCCTTGCAAAACATTCTCAGCCTTTCTGACGTGCAAGCCAAATGCCT
CGCCCTCGGTCACGCCCTCCCTCCCTCTGTTCCCCCAGTCCCCTCTTCTC
CCCCTCCATCGCCCTCTCCTGCGGCCGGAATTTCCGTCGGCGTTGTCACG
GGCCGACGGGGCTCTACCACCACGCCGAAACCTCCCGAGCTCGCTTCTTC
CACGCGCCCAACCTCCTCTTCCCAGCACCAGGTGCGAGAAGGGCGGGAAC
GGCTTCCCTCCCTCGTCTCGTCCCCACCACGGCAGACGCTTCCCTTGGCA
TGGACTGGAGCCGACCACGATTCCCCCAACCCCCAACTTTACCCGGAAAA
CGCCGAAAACCCCACTTCGCCCAGTCCGACATGGACTCGAGGCCGGCAAC
CCAGCCGTTTGGAGGCATCTCAAGAGCTTCCTGCAGGCACTGCGCGGGGC
AGCGGTCGCGTCCCTGCCCTCGCCCTCCCTCCCCCCCTCATTATTTCGCC
TCATTCCTCTCTGGACCGAGACCCTTTCTCCCCCAGCCCTTCCCATCGGC
ACCACCGCCCTTCCACCCTCACCCCTGCCTCCTCCACCTCACCCCCACCC
CCACCTCTCTCCTCCTCCACCTCCTCCGCCCGTGCCCGCCTGTCGTCCCG
GAACAGCTTTGGCCGTAGCACGGATCTCCCTGCGCACCGGAAAGCCCTTT
CCTCCATCTCCGACAGCTTCGCGCCCGAGCTCGTCGGCCTTTTCCCCG
back to top

Coding sequence (CDS) from alignment at CM002455.1:115841..117588-

>rna41 ID=rna41|Name=rna41|organism=Nannochloropsis gaditana|type=CDS|length=1693bp|location=Sequence derived from alignment at CM002455.1:115841..117588- (Nannochloropsis gaditana)
ATGGGGGAGAAAGACAACACCACCGGGGCACTTCTGTCAGCAAGTCTCAA
GTCTCCAGCCATGTTCCGAGGTGCCGAGGCCGCGGGCAGCTTACGGCGCC
AAAGGGCTTCTTCGACGTCTTTCAAGAGCTCCGCTCATAATGAATCATCA
CCTGCAAAAATAAATTTACCGTCATCGTCCTTATCTGCGTTTGAGGTGGA
TGATCGGCTGGGAAAAGGAGCCTTTGGCGTCGTACATCGGGCTCGGCGGA
AGCAGGACGGGAAATGGTACGTCATCAAAACCGTTTCCCTGGGCGAAATG
GAGGAGGGGGCCCGCTCGGAGGCAGTAAATGAAGTGCATATCCTTGCCTC
CATATCCTCCCCGTACGTGGTCAAATACTACGACTCATTCGTAGAGCGGG
AAGAACTGCACATTGTAATGGAATACTGCAATCGCGGGGACCTTCAACGC
ATCATCCACAAGCTGAAACGGGAAAATTGCCGAAGCATTGCCGAAGAAAA
AATATGGGCCATCTTTGTTCAGGTGGCCCTGGGCCTGCACCACCTCCACT
CCCGGCAGATCTTGCACAGGGACATGAAAGCGGCCAATGTCTTCATCCAC
AAGGACGAAGCCAGCGGGCGCCAGCAGGTCAAAATCGGGGATTTGGGCGT
GGCAAAGCTGCTCAACACGAAAACCACCCTGGCCACTACCATGGTCGGGA
CCCCGTACTACCTTTCCCCGGAGCTCTGCCGGTCTCAGGCCTACGACGCG
CGGTCGGACGTCTGGTCCCTTGGTGTCCTCCTCTATCAATGTTGCACCCT
GAAGCTCCCTTTCGACGCAGACAACCCATACTTGCTCATGACCAAGATCA
TCGAGGGGGAGTACGAAGCCCTTTCCTCCAAATATCTGAGCACGTCCCTG
GTCAAGCTGGTGGAACGGCTCTTAACGGCCGATCCGCAACGGCGGCCTTC
CTTGCAAAACATTCTCAGCCTTTCTGACGTGCAAGCCAAATGCCTCGCCC
TCGGTCACGCCCTCCCTCCCTCTGTTCCCCCAGTCCCCTCTTCTCCCCCT
CCATCGCCCTCTCCTGCGGCCGGAATTTCCGTCGGCGTTGTCACGGGCCG
ACGGGGCTCTACCACCACGCCGAAACCTCCCGAGCTCGCTTCTTCCACGC
GCCCAACCTCCTCTTCCCAGCACCAGGTGCGAGAAGGGCGGGAACGGCTT
CCCTCCCTCGTCTCGTCCCCACCACGGCAGACGCTTCCCTTGGCATGGAC
TGGAGCCGACCACGATTCCCCCAACCCCCAACTTTACCCGGAAAACGCCG
AAAACCCCACTTCGCCCAGTCCGACATGGACTCGAGGCCGGCAACCCAGC
CGTTTGGAGGCATCTCAAGAGCTTCCTGCAGGCACTGCGCGGGGCAGCGG
TCGCGTCCCTGCCCTCGCCCTCCCTCCCCCCCTCATTATTTCGCCTCATT
CCTCTCTGGACCGAGACCCTTTCTCCCCCAGCCCTTCCCATCGGCACCAC
CGCCCTTCCACCCTCACCCCTGCCTCCTCCACCTCACCCCCACCCCCACC
TCTCTCCTCCTCCACCTCCTCCGCCCGTGCCCGCCTGTCGTCCCGGAACA
GCTTTGGCCGTAGCACGGATCTCCCTGCGCACCGGAAAGCCCTTTCCTCC
ATCTCCGACAGCTTCGCGCCCGAGCTCGTCGGCCTTTTCCCCG
back to top
Synonyms
Publications