rna4089, rna4089 (mRNA) Nannochloropsis gaditana

Overview
Namerna4089
Unique Namerna4089
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1569
Alignment locationCM002462.1:829033..829584 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g23.8263.mrna
Orig protein idgnl|cribi|Naga_100001g23.8263
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:829033..829584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g23gene3935Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4089rna4089-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26752.1cds4079Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4089 ID=rna4089|Name=rna4089|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp
ATGAGTAAAATTAGCTATGGAACCGCTGAGAAAGAGGATGCGGCCGGACC
GCTCCTGGCCATAATCTACAGTGATTTTGACAATACTATTGGGCCCACGA
TCCGCTGTCAGACGCCCGACGGCTTCCTTTCTCAAGAGGTCTTCGATAGC
ATCTCAGACTATGTCATCACAGGACGGCAACTGTATGGAAAGACCATCGC
TGTGACGGTTTCTGACCTTCAAATAGTTGGATTCCCCTTGTGCATTGAGA
ACGAAAAGTATCCCCGTAACACCTTCCTCTTCAACGTCAGCTTTGTTCTG
GATGCCCGGAGCGACCCCGCTCCTTACGAGCCCATCCTCCGCAAGGTGGC
TCTGACTCTTTATAGCCTAGAGGAAGACAGGGAGTTCATCTCCAGGCCCG
AGACAAGATGGCAGCTACACCGCATGCTGCACCGGATCCTGGAGGATTTG
AACGCCCGCAAGGAGTGTCTTCTCATATTGGACGATGCGAACTTGTTGTC
TCTGAAGCTGGTTCACGTCGTGCAGGAGCCTCCTGTCGTCGGCGATCACC
AAGTGCCGGTCTTCCTGCGCGATGCGGCGGTCCTTAAGAATCTAGATTGG
GATTTGGCCTTGCGTCACATTATCCCCCACATCGATGGGATCAAGTATGC
GAAGCGGCTGGCAATGGACGCGGAGATGGACGTGGATTGTGTCAAGGCCG
CCTTGCGAACCCTGGTCCACTACGACTTCATCGCCCTGGTGGATATATTC
AAATTCTCCAACGTCTACGTGATAAGTGGCACGGAGGCCGCAGCCTTCCG
CGAGTTTATGGACAGCCCCGCCATGCTTGAGGAATGTAGGAAGTTTGTCT
GCTATCCTCCAGCATGCACGTCATCACAGGCTCTTCCACCTCATACTCCC
ACGAGCACCCCGGCTACGACTGGCCATTGCACTGATTCTCCGACCATTGC
ATCCCAATCAGTCATGGAGGACAGGATGGGTGCGGGCGAGAGAATGACAG
GAGGGGCACGGCCTGGAGAAGAGGACGAAGCCTCACCCCTGTTGACAAGT
GATGAAGACTTGATAAATTTGTACAGGGCTTTCGGACCTCACCTAACACT
GGCAGACATTATCAGCGCGCGTAAACAGAAAATGCGTGCGGTGGACGCCC
GTAGACTTGTGACTTTCGGTGTCGTCTATGGTTTCTTAAGACGTGTGCAT
CGATATCCAGTTTATCTGCCGGCGTCAAAGGAATCGAACCAGCCGCCTGG
ACCGATCAGAAACGGACAACGCACGCAAGATGGGACACTGGGGAGGGGGG
GAGGGAAAAAATATGGAACCAAATTGACATCACAGAGGTCCTCCATCTCT
AAAGAGGATGCTGGCAAGACCGTGAACAACAAGTCGAATGAACATAAGCA
GCGCTCGACTCAAAAGTACCCATTGTCATTGGTGAAACAGGTCCAGTCCG
TTTTTGACGGGACGCGAACGTTGGATGAGGCATGCGTAAAGTTTATGAGG
CCTTTTCAGGAGCTGAAGGACATCGCCCTCAGTTCCGAGGGAGGGGAGGT
TGTAATTCTGTATAAGTAA
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protein sequence of rna4089

>rna4089-protein ID=rna4089-protein|Name=rna4089|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MKQLQTLVRQGRKVLANMYLREILTTRDTCFFFQPPSMNSETVLQMKQKF
RAQTGLTWRSFSPAVSQHYLKDSPYKALIRLLQGPMIVAYPEEIADRAIP
TRAVLGLAKEFNLGILGAKWQNNFLSAADLKELKAEGVYRGEVLGLFATY
QREVVQALNMHHEKESGIQTKVEEGGGGNRGAN
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mRNA from alignment at CM002462.1:829033..829584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4089 ID=rna4089|Name=rna4089|organism=Nannochloropsis gaditana|type=mRNA|length=552bp|location=Sequence derived from alignment at CM002462.1:829033..829584+ (Nannochloropsis gaditana)
ATGAAACAGCTTCAGACACTTGTGCGGCAAGGGCGAAAAGTTCTTGCCAA
CATGTATCTACGTGAGATCCTGACGACGCGAGACAcgtgcttcttcttcc
aaccGCCATCAATGAACTCTGAGACCGTGCTGCAGATGAAACAAAAATTC
CGCGCTCAGACAGGCCTTACCTGGCGATCTTTCTCGCCTGCAGTGTCTCA
GCACTATCTGAAAGACAGCCCTTACAAGGCATTAATTCGACTTCTGCAAG
GACCCATGATTGTGGCGTACCCGGAAGAGATTGCGGACCGTGCCATTCCT
ACTCGTGCAGTCCTTGGACTTGCGAAAGAATTCAATTTAGGTATACTCGG
AGCCAAATGGCAAAATAACTTTCTATCAGCGGCAGATCTGAAAGAACTGA
AAGCAGAGGGTGTGTACAGGGGGGAGGTTCTGGGATTGTTCGCAACCTAT
CAGCGAGAAGTAGTCCAAGCCCTTAATATGCACCACGAGAAAGAGAGTGG
AATACAAAcgaaggtggaagagggaggaggtggaaacaGGGGGGCAAATT
GA
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Coding sequence (CDS) from alignment at CM002462.1:829033..829584+

>rna4089 ID=rna4089|Name=rna4089|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at CM002462.1:829033..829584+ (Nannochloropsis gaditana)
ATGAAACAGCTTCAGACACTTGTGCGGCAAGGGCGAAAAGTTCTTGCCAA
CATGTATCTACGTGAGATCCTGACGACGCGAGACAcgtgcttcttcttcc
aaccGCCATCAATGAACTCTGAGACCGTGCTGCAGATGAAACAAAAATTC
CGCGCTCAGACAGGCCTTACCTGGCGATCTTTCTCGCCTGCAGTGTCTCA
GCACTATCTGAAAGACAGCCCTTACAAGGCATTAATTCGACTTCTGCAAG
GACCCATGATTGTGGCGTACCCGGAAGAGATTGCGGACCGTGCCATTCCT
ACTCGTGCAGTCCTTGGACTTGCGAAAGAATTCAATTTAGGTATACTCGG
AGCCAAATGGCAAAATAACTTTCTATCAGCGGCAGATCTGAAAGAACTGA
AAGCAGAGGGTGTGTACAGGGGGGAGGTTCTGGGATTGTTCGCAACCTAT
CAGCGAGAAGTAGTCCAAGCCCTTAATATGCACCACGAGAAAGAGAGTGG
AATACAAAcgaaggtggaagagggaggaggtggaaacaGGGGGGCAAATT
GA
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Synonyms
Publications