rna4082, rna4082 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4082
Unique Name	rna4082
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1511
Alignment location	CM002462.1:811061..812872 +

Link to JBrowse

Properties


Property Name	Value
Product	anion exchanger family
Orig transcript id	gnl\|cribi\|Naga_100001g30.8192.mrna
Orig protein id	gnl\|cribi\|Naga_100001g30.8192
Gene	bor1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:811061..812872 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
bor1	gene3928	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4082	rna4082-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26681.1	cds4072	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:811061..812872+
coding sequence from alignment at CM002462.1:811061..812872+

mRNA sequence

>rna4082 ID=rna4082|Name=rna4082|organism=Nannochloropsis gaditana|type=mRNA|length=1511bp
ATGGGCAGCGGACAACGGGGCGCTCCCACTGGCGGCACTTTTAGCCCCGG
CAGCGACGACAGTCCCGTGAAGATGCCCGGCCAGCAAGCTCGAGGGTCTC
TGGTTAGTACCTGTGCCCTTCTTGTGGGCGCCTTGGCCGTCCTCCTCAGC
GGAACGGTCTCCCTTTCCCGGTATCCCCCTCGCTCCTTCCCACGTGTTGT
CGTCGGCGAGGAGTTCCTCCAGGAAGCCGGCGGTCAATTTGTCACCCTCT
CCAAAGGCCGCGTCCACTACGTCCTCCGGGAGCCGACCACGCCATCAGAC
CTTCCCCCCGTTGTCTTGATCCATGGCTTCTCCTTGGGCTGTATCATCTG
GAACGACGTGGCGGACGCCCTCGTCTCTCAAGGAGGCCGTCGGGTCTTGG
CCTTTGACTTGTACGGCCGCGGCTACAGCGACGCCGCCTTCCCCTGCGAT
GTCGAGCTCTTTTCTGGGCAGTTGACGGAGCTGCTTTTTGCCCTCCAGCC
AATCCTTGGCCCGGGGCCTATCGATATATTCGGGACCTCGATGGGGGGGG
CCATCGCCGTGCATTTCACGCACTTGCATCCGGAGCGCGTGCGGCGACTC
GCCCTCCTGGCGCCCGCCGGCCTGCCCGTCAACGTGCCGTGGACCGCCAA
GCTTGGGAAGCTCCCCTTCTTCGGGGACATCTTCATGCCGATTTTGGGCC
CCGTTTCGCTCCGGACGTATGCCCGCAAAGGCCATGCCTATCCGGACGAC
CCCGCTTTCCAGCCGACCTTCGCCGCCATGAGCCGCGTACTGCGCCGGCA
GAGTCAGGTGAACCCAGCTTTCTTCCCCGCGCTCCTCTCCACGCTGCGGG
ATTTCCCTCTGAACGACCTTGTGTGGGCCTACGAATCCGTGGCCAGAACC
AGGAAGGACGGGAGCGTGCTCGTGATATGGGGCGACAGGGACGTCATCAC
GCCGTTCATGCACGCCTCGCGCGTTATCGATTTGCTGGGAGGGCCGGCCA
AGGCGAAGCTGCTGGTTCTGGACGACTGCGGCCATGTGGACCCCTTGGAG
GTGCAACGAAACATCGAGGAGATGATGCCCCCCCTTCTTGCGCACTTGGG
ATGACGGGGGGGAGAGAGGGGGGACTCCGGGTTTGGCAAGGCTTGTTTGC
CGTGTATTTTAGGTAGGGGTGCTGCGCAGAGCTACTGGAGCAATACGGGT
GCGCAAAAAGAAAAGGAATACATGTTCACCTCGGTGTTGAGAGGCTGATT
TTCCACCGAAAGGCATGTTCTCCTGGGCGAGATTCTGAGGGTTGGGCGGC
GGGTCGAGGACAGGAACGAGCGCACACGACGTGGACGTGCCCGCGAACGA
TCGGAAAGGAAGCCAGACTGCACGCAAAGCCTCTCTTAATGACCGTTCTG
CCCAGACAATCATGCATCCCCCTGCGGACCTGTGGGGCCTCCCTCCTCCC
TTCGCCTCTTCTTCGCCTGTCGTCCCACCGCGTCCTGGCCCGCGTTGCCA
CTGTCCTTCCC

protein sequence of rna4082

>rna4082-protein ID=rna4082-protein|Name=rna4082|organism=Nannochloropsis gaditana|type=polypeptide|length=603bp
MAPSMQVPTPKTVLLLVLALILMANTHVFAFVTPASRPLKAPTNALRFTC
SPAIPVRAPVFKPSRIYKLRPACSAAVPAASDMPVPPMSPATDSSSEEDT
SKSQKILERPFKGIVEDVHRKAPHYLSDFKDGANVKGVAAIFFLFFACLA
PAVAFGGLMGKLTEGNIGTMEMLLATASNGIAYALFSGQPLTIIGSTGPV
LAFTLVLYRTAQNLALPFLPLYSWVGIWTSLILFLSSVTSLSNLVNYFTR
FTDEIFSLLISLIFLYEAVKDLSSFFINPSVGFAKALLSLVIAVTTFNTS
ITLAGLRRGKLFTKRVRDVIADFAPTIGVLAGCFLTALAKAKKAEALPTL
LIPDSFSTSLGRPWLVNIFALPIWARWAAFIPALMSSVLLFMDQNITVRL
VNSPSHKIKKGYGLHLDMFVVSILTFINSLFGLPWLVAATVRSLNHVRAC
ARFKSTEDGEVVIESMQENRLTGLAIHSLIGVAILGFRPLLGQVPLAVLM
GLFLYLGKSSLAGNQMWERLKLLITDPAQRPKAAWAQKVPFKVSAAFTGL
QFACLGGMWALKSSPIGVLFPLLIAALAPIRVAIEKLGWFDKKDLEILDS
EDD

mRNA from alignment at CM002462.1:811061..812872+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4082 ID=rna4082|Name=rna4082|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp|location=Sequence derived from alignment at CM002462.1:811061..812872+ (Nannochloropsis gaditana)
ATGGCACCCTCTATGCAGGTGCCAACACCCAAAacggtcctcctccttgt
ccttgccctcatcctcatgGCGAATACCCAtgtcttcgccttcgtcaccc
cggcctcccgccccctgaAGGCCCCAACCAATGCCCTGCGTTTCACATGC
TCCCCAGCCATTCCCGTACGCGCGCCTGTGTTCAAACCTAGCCGTATATA
CAAGCTACGTCCCGCCTGCTCAGCGGCCGTGCCTGCCGCCTCCGACATGC
CTGTTCCCCCCATGTCCCCGGCCACCGACTCCTCGTCCGAGGAAGATACG
TCCAAGTCCCAGAAGATATTGGAACGACCGTTCAAAGGCATCGTGGAAGA
CGTCCATCGCAAGGCCCCCCACTACCTGTCCGACTTCAAGGACGGCGCGA
ACGTGAAGGGGGTGGCGGCTAtcttcttcctgttcttCGCCTGTTTggcc
cccgccgtcgccttcGGAGGCCTGATGGGCAAGCTCACGGAGGGAAACAT
CGGGACCATGGAGATGCTCctggccaccgcctccaacgGCATTGCCTACG
CGCTTTTCTCCGGGCAGCCCCTCACCATCATCGGCAGCACCGGCCCCGTC
TTGGCCTTCACGCTCGTGCTCTACCGGACCGCTCAGAATCTGGcgctgcc
tttcctccccctctattCCTGGGTGGGCATCTGGAcgtccctcatcctct
tcctctcctctgtcaCCAGCCTCTCCAATTTGGTCAACTACTTTACACGC
TTCACCGACGagatcttctccctcctcatctccctcatcttcctgtACGA
AGCAGTCAAggacctctcctcctttttcatcaACCCCTCCGTTGGCTTCG
CcaaggccctcctctccctcgtcatcGCGGTCACCACCTTCAACACCAGC
ATCACGCTCGCAGGCCTTCGACGCGGGAAGCTCTTTACCAAGCGCGTCCG
CGACGTCATCGCGGATTTTGCCCCCACCATCGGTGTCCTGGCCGGGTGTT
TTCTCACCGCCCTTGCCAAAGCCAAGAAGGCCGAGGCACTGCCAACGCTG
TTGATTCCCGattctttctccacctcccttgGCCGGCCCTGGCTGGTGAA
TATTTTCGCGTTGCCTATATGGGCCCGGTGGGCAGCTTTCATCCCCGCGC
TCATGTCCTCTGTCCTGCTCTTCATGGATCAGAATATCACGGTCCGCTTG
GTGAATTCCCCCTCGCACAAGATCAAGAAGGGGTACGGCTTGCACTTGGA
CATGTTCGTCGTCTCCATCCTGACCTTTATCAATTCCTTGTTTGGTCTCC
CGTGGTTGGTGGCCGCCACAGTCAGGTCCTTGAACCACGTCCGGGCGTGT
GCGCGCTTTAAGAGCACTGAAGACGGCGAGGTGGTGATCGAGAGCATGCA
AGAGAACCGGCTCACGGGCCTTGCCATCCACTCATTGATCGGGGTAGCCA
TTCTCGGgttccgtcccctccttgggcAGGTCCCCCTGGCGGTTTTGATG
GGACTCTTCCTCTACTTGGGAAAGAGCTCTTTGGCTGGTAATCAAATGTG
GGAGCGGTTGAAATTGCTCATTACCGATCCTGCGCAACGTCCGAAAGCGG
CGTGGGCGCAAAAGGTACCTTTTAAAGTCAGCGCTGCGTTCACAGGATTG
CAGTTTGCCTGTCTTGGAGGGATGTGGGCCCTTAAGTCATCTCCGATTGG
TGTCTTATTTCCCTTACTGATCGCTGCGCTTGCCCCCATCCGCGTTGCAA
TCGAGAAGCTTGGATGGTTCGACAAGAAAGATTTGGAGATCTTAGACTCG
GAAGATGACTAA

Coding sequence (CDS) from alignment at CM002462.1:811061..812872+

>rna4082 ID=rna4082|Name=rna4082|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at CM002462.1:811061..812872+ (Nannochloropsis gaditana)
ATGGCACCCTCTATGCAGGTGCCAACACCCAAAacggtcctcctccttgt
ccttgccctcatcctcatgGCGAATACCCAtgtcttcgccttcgtcaccc
cggcctcccgccccctgaAGGCCCCAACCAATGCCCTGCGTTTCACATGC
TCCCCAGCCATTCCCGTACGCGCGCCTGTGTTCAAACCTAGCCGTATATA
CAAGCTACGTCCCGCCTGCTCAGCGGCCGTGCCTGCCGCCTCCGACATGC
CTGTTCCCCCCATGTCCCCGGCCACCGACTCCTCGTCCGAGGAAGATACG
TCCAAGTCCCAGAAGATATTGGAACGACCGTTCAAAGGCATCGTGGAAGA
CGTCCATCGCAAGGCCCCCCACTACCTGTCCGACTTCAAGGACGGCGCGA
ACGTGAAGGGGGTGGCGGCTAtcttcttcctgttcttCGCCTGTTTggcc
cccgccgtcgccttcGGAGGCCTGATGGGCAAGCTCACGGAGGGAAACAT
CGGGACCATGGAGATGCTCctggccaccgcctccaacgGCATTGCCTACG
CGCTTTTCTCCGGGCAGCCCCTCACCATCATCGGCAGCACCGGCCCCGTC
TTGGCCTTCACGCTCGTGCTCTACCGGACCGCTCAGAATCTGGcgctgcc
tttcctccccctctattCCTGGGTGGGCATCTGGAcgtccctcatcctct
tcctctcctctgtcaCCAGCCTCTCCAATTTGGTCAACTACTTTACACGC
TTCACCGACGagatcttctccctcctcatctccctcatcttcctgtACGA
AGCAGTCAAggacctctcctcctttttcatcaACCCCTCCGTTGGCTTCG
CcaaggccctcctctccctcgtcatcGCGGTCACCACCTTCAACACCAGC
ATCACGCTCGCAGGCCTTCGACGCGGGAAGCTCTTTACCAAGCGCGTCCG
CGACGTCATCGCGGATTTTGCCCCCACCATCGGTGTCCTGGCCGGGTGTT
TTCTCACCGCCCTTGCCAAAGCCAAGAAGGCCGAGGCACTGCCAACGCTG
TTGATTCCCGattctttctccacctcccttgGCCGGCCCTGGCTGGTGAA
TATTTTCGCGTTGCCTATATGGGCCCGGTGGGCAGCTTTCATCCCCGCGC
TCATGTCCTCTGTCCTGCTCTTCATGGATCAGAATATCACGGTCCGCTTG
GTGAATTCCCCCTCGCACAAGATCAAGAAGGGGTACGGCTTGCACTTGGA
CATGTTCGTCGTCTCCATCCTGACCTTTATCAATTCCTTGTTTGGTCTCC
CGTGGTTGGTGGCCGCCACAGTCAGGTCCTTGAACCACGTCCGGGCGTGT
GCGCGCTTTAAGAGCACTGAAGACGGCGAGGTGGTGATCGAGAGCATGCA
AGAGAACCGGCTCACGGGCCTTGCCATCCACTCATTGATCGGGGTAGCCA
TTCTCGGgttccgtcccctccttgggcAGGTCCCCCTGGCGGTTTTGATG
GGACTCTTCCTCTACTTGGGAAAGAGCTCTTTGGCTGGTAATCAAATGTG
GGAGCGGTTGAAATTGCTCATTACCGATCCTGCGCAACGTCCGAAAGCGG
CGTGGGCGCAAAAGGTACCTTTTAAAGTCAGCGCTGCGTTCACAGGATTG
CAGTTTGCCTGTCTTGGAGGGATGTGGGCCCTTAAGTCATCTCCGATTGG
TGTCTTATTTCCCTTACTGATCGCTGCGCTTGCCCCCATCCGCGTTGCAA
TCGAGAAGCTTGGATGGTTCGACAAGAAAGATTTGGAGATCTTAGACTCG
GAAGATGACTAA

Synonyms

Publications