rna4081, rna4081 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4081
Unique Name	rna4081
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1359
Alignment location	CM002462.1:808431..810358 -

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Properties


Property Name	Value
Product	alpha beta hydrolase
Orig transcript id	gnl\|cribi\|Naga_100001g31.8152.mrna
Orig protein id	gnl\|cribi\|Naga_100001g31.8152
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:808431..810358 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g31	gene3927	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4081	rna4081-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26641.1	cds4071	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:808431..810358-
coding sequence from alignment at CM002462.1:808431..810358-

mRNA sequence

>rna4081 ID=rna4081|Name=rna4081|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp
ATGGCTAGTTTCAGAGACCAACTTGCTGGGTTTAAGGGCCTGAGGGCGTC
CCTGGAGAAGAAGGAACAAAAAGACGCAGCAATGGAGCGCAAGAATGAGG
CTGCGAGATTGGCCAGCTTAAGACTTGGGCAGCGTCTTGTTAAAGCGGGT
AGGTTTATCCGTAACAGTATTTTGCTAAAACGCAGTGAGGCGAGTGGAGG
CTGCATCAAGAAGCGCAGGATGGGGCTTCTCATCCTGATCATTGATAGCC
TCCCGTTCGAGCCCCTGTGGCGCGAATGGATGCAACGACAAAATGGAGCG
ACAGAAGTCAAAGTCTGGATACATGCGAAGCACCCGGACAAAGTGACTTC
TCCGTGGGTATTAGAGAAGCTCATACCCAGGTCCTTTTGTCCTGCGTGGG
GCTCGGTTGATATTACACGTGCCGAGTTGGAGCTTTTGCGGGTCGCTGTG
GAAGATGCATCCGATATACAGCTCTTTCTCTTCGCATCTGAGTCGTGCAT
CCCCATTCAGCCCCTCGATACCGCCGTAAAATCCCTCTTCCCCGTGGAAA
CTTCCGGGACGTCCTCAAGACCACAAAGCTGGCTCCATTTTACAGACAAG
CCCAATAACGGCTATTCGAACCAACAGCAATTTGAGCCGCTCGTGAAAGC
AGGACTTCCGTCTACTTGCATCTGGAAGGCGGATCAATGGGTGGCTTTAA
CACGACCCCACGCAGAAGCAGTCTTGGCGTTGCCCAAGGCCTTCGGTGAA
GACTTGTGGCCGATGTTCAGAGCGGCGTCGGCCTCGGACGAGATGTATTT
CCCTACTTGCCTGGCGCTGCTTGGCGAGATAGGTCCAAGCGGACCAAAAG
TCGTCACGGAAGACGCGGCATCTTCGTGCTTGGGAAGCGTGGATGGATCG
AAGAAAGAAGGAGGGCTTGAGAAAGAGAGCACCCTGACGAAGAGCACTAC
AGGCACCGGCCTCGGAATAGAGGAGAGCATGCCTCCTAGAGCGGGGGAGG
GTGTTGTCAACGCGGGAGGGAAAGAACAGCAGCAGCCCGTGCTCAGACGA
CGACTGACGTACTGTTGCTGGGGAGATTCGCCGAAAAGCCCCGAGACCTA
CGAGGGGCTTCCCTCCCACGTCTTGGAGCGAGGGATAAGGGAGGGCAGTC
TGTTGGGGAGAAAGTTCAAGGCTGGGACTGTGAAACTCGAGGAGTGGCTG
GCGCACATGAGGGCCATGGAGGGGAAGGGAGATGAAGGATTTCATGTGCA
GGGGGTGGGGAAGGACAGTGGCAACGCGGGCCAGGACGCGGTGGGACGAC
AGGCGAAGAAGAGGCGAAGGGAGGAGGGAGGCCCCACAGGTCCGCAGGGG
GATGCATGA

protein sequence of rna4081

>rna4081-protein ID=rna4081-protein|Name=rna4081|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MGSGQRGAPTGGTFSPGSDDSPVKMPGQQARGSLVSTCALLVGALAVLLS
GTVSLSRYPPRSFPRVVVGEEFLQEAGGQFVTLSKGRVHYVLREPTTPSD
LPPVVLIHGFSLGCIIWNDVADALVSQGGRRVLAFDLYGRGYSDAAFPCD
VELFSGQLTELLFALQPILGPGPIDIFGTSMGGAIAVHFTHLHPERVRRL
ALLAPAGLPVNVPWTAKLGKLPFFGDIFMPILGPVSLRTYARKGHAYPDD
PAFQPTFAAMSRVLRRQSQVNPAFFPALLSTLRDFPLNDLVWAYESVART
RKDGSVLVIWGDRDVITPFMHASRVIDLLGGPAKAKLLVLDDCGHVDPLE
VQRNIEEMMPPLLAHLG

mRNA from alignment at CM002462.1:808431..810358-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4081 ID=rna4081|Name=rna4081|organism=Nannochloropsis gaditana|type=mRNA|length=1928bp|location=Sequence derived from alignment at CM002462.1:808431..810358- (Nannochloropsis gaditana)
ATGGGCAGCGGACAACGGGGTAAGTGCTGCTTTGCTTGTCTTCATTTTTC
GTTTCAACAACCAGTTGTCAGACAAGACAGAATAATTAAATGAAAAAATG
GTAAAAAAGGCTCTAAATGCGAGACTTGGGAGGTGACTAGGAGTGGTGAA
CTTGAGGGATAAGCACTTAATTTAGTCATATCAAAAGACATGGAGGTAAT
TGGAACTCGCGAGAGCTCGTAAAAAGGTTCTATGCACAACTATTGGGCAC
GTAAAACTTGCAAGCATCGATCGACGTGAGGAATGCACGAGCAATTACCC
CGTTTGTCCGTCTCTGTCATTGACGTCCTACCTGCAGTCACAGTCTCCAC
AACCTGGAGCTTGTCTCCCTCCCTCCCATCGGAACATCATTTGACGTTCA
CCGCTGCACCCCTTTTACCTTCTACCATGATGACAGGCGCTCCCACTGGC
GGCACTTTTAGCCCCGGCAGCGACGACAGTCCCGTGAAGATGCCCGGCCA
GCAAGCTCGAGGGTCTCTGGTTAGTACCTGTGCCCTTCTTGTGGGCGCCT
TGGCCGTCCTCCTCAGCGGAACGGTCTCCCTTTCCCGGTATCCCCCTCGC
TCCTTCCCACGTGTTGTCGTCGGCGAGGAGTTCCTCCAGGAAGCCGGCGG
TCAATTTGTCACCCTCTCCAAAGGCCGCGTCCACTACGTCCTCCGGGAGC
CGACCACGCCATCAGACCTTCCCCCCGTTGTCTTGATCCATGGCTTCTCC
TTGGGCTGTATCATCTGGAACGACGTGGCGGACGCCCTCGTCTCTCAAGG
AGGCCGTCGGGTCTTGGCCTTTGACTTGTACGGCCGCGGCTACAGCGACG
CCGCCTTCCCCTGCGATGTCGAGCTCTTTTCTGGGCAGTTGACGGAGCTG
CTTTTTGCCCTCCAGCCAATCCTTGGCCCGGGGCCTATCGATATATTCGG
GACCTCGATGGGGGGGGCCATCGCCGTGCATTTCACGCACTTGCATCCGG
AGCGCGTGCGGCGACTCGCCCTCCTGGCGCCCGCCGGCCTGCCCGTCAAC
GTGCCGTGGACCGCCAAGCTTGGGAAGCTCCCCTTCTTCGGGGACATCTT
CATGCCGATTTTGGGCCCCGTTTCGCTCCGGACGTATGCCCGCAAAGGCC
ATGCCTATCCGGACGACCCCGCTTTCCAGCCGACCTTCGCCGCCATGAGC
CGCGTACTGCGCCGGCAGAGTCAGGTGAACCCAGCTTTCTTCCCCGCGCT
CCTCTCCACGCTGCGGGATTTCCCTCTGAACGACCTTGTGTGGGCCTACG
AATCCGTGGCCAGAACCAGGAAGGACGGGAGCGTGCTCGTGATATGGGGC
GACAGGGACGTCATCACGCCGTTCATGCACGCCTCGCGCGTTATCGATTT
GCTGGGAGGGCCGGCCAAGGCGAAGCTGCTGGTTCTGGACGACTGCGGCC
ATGTGGACCCCTTGGAGGTGCAACGAAACATCGAGGAGATGATGCCCCCC
CTTCTTGCGCACTTGGGATGACGGGGGGGAGAGAGGGGGGACTCCGGGTT
TGGCAAGGCTTGTTTGCCGTGTATTTTAGGTAGGGGTGCTGCGCAGAGCT
ACTGGAGCAATACGGGTGCGCAAAAAGAAAAGGAATACATGTTCACCTCG
GTGTTGAGAGGCTGATTTTCCACCGAAAGGCATGTTCTCCTGGGCGAGAT
TCTGAGGGTTGGGCGGCGGGTCGAGGACAGGAACGAGCGCACACGACGTG
GACGTGCCCGCGAACGATCGGAAAGGAAGCCAGACTGCACGCAAAGCCTC
TCTTAATGACCGTTCTGCCCAGACAATCATGCATCCCCCTGCGGACCTGT
GGGGCCTCCCTCCTCCCTTCGCCTCTTCTTCGCCTGTCGTCCCACCGCGT
CCTGGCCCGCGTTGCCACTGTCCTTCCC

Coding sequence (CDS) from alignment at CM002462.1:808431..810358-

>rna4081 ID=rna4081|Name=rna4081|organism=Nannochloropsis gaditana|type=CDS|length=2208bp|location=Sequence derived from alignment at CM002462.1:808431..810358- (Nannochloropsis gaditana)
GCGCTCCCACTGGCGGCACTTTTAGCCCCGGCAGCGACGACAGTCCCGTG
AAGATGCCCGGCCAGCAAGCTCGAGGGTCTCTGGTTAGTACCTGTGCCCT
TCTTGTGGGCGCCTTGGCCGTCCTCCTCAGCGGAACGGTCTCCCTTTCCC
GGTATCCCCCTCGCTCCTTCCCACGTGTTGTCGTCGGCGAGGAGTTCCTC
CAGGAAGCCGGCGGTCAATTTGTCACCCTCTCCAAAGGCCGCGTCCACTA
CGTCCTCCGGGAGCCGACCACGCCATCAGACCTTCCCCCCGTTGTCTTGA
TCCATGGCTTCTCCTTGGGCTGTATCATCTGGAACGACGTGGCGGACGCC
CTCGTCTCTCAAGGAGGCCGTCGGGTCTTGGCCTTTGACTTGTACGGCCG
CGGCTACAGCGACGCCGCCTTCCCCTGCGATGTCGAGCTCTTTTCTGGGC
AGTTGACGGAGCTGCTTTTTGCCCTCCAGCCAATCCTTGGCCCGGGGCCT
ATCGATATATTCGGGACCTCGATGGGGGGGGCCATCGCCGTGCATTTCAC
GCACTTGCATCCGGAGCGCGTGCGGCGACTCGCCCTCCTGGCGCCCGCCG
GCCTGCCCGTCAACGTGCCGTGGACCGCCAAGCTTGGGAAGCTCCCCTTC
TTCGGGGACATCTTCATGCCGATTTTGGGCCCCGTTTCGCTCCGGACGTA
TGCCCGCAAAGGCCATGCCTATCCGGACGACCCCGCTTTCCAGCCGACCT
TCGCCGCCATGAGCCGCGTACTGCGCCGGCAGAGTCAGGTGAACCCAGCT
TTCTTCCCCGCGCTCCTCTCCACGCTGCGGGATTTCCCTCTGAACGACCT
TGTGTGGGCCTACGAATCCGTGGCCAGAACCAGGAAGGACGGGAGCGTGC
TCGTGATATGGGGCGACAGGGACGTCATCACGCCGTTCATGCACGCCTCG
CGCGTTATCGATTTGCTGGGAGGGCCGGCCAAGGCGAAGCTGCTGGTTCT
GGACGACTGCGGCCATGTGGACCCCTTGGAGGTGCAACGAAACATCGAGG
AGATGATGCCCCCCCTTCTTGCGCACTTGGGATGAATGGGCAGCGGACAA
CGGGGCGCTCCCACTGGCGGCACTTTTAGCCCCGGCAGCGACGACAGTCC
CGTGAAGATGCCCGGCCAGCAAGCTCGAGGGTCTCTGGTTAGTACCTGTG
CCCTTCTTGTGGGCGCCTTGGCCGTCCTCCTCAGCGGAACGGTCTCCCTT
TCCCGGTATCCCCCTCGCTCCTTCCCACGTGTTGTCGTCGGCGAGGAGTT
CCTCCAGGAAGCCGGCGGTCAATTTGTCACCCTCTCCAAAGGCCGCGTCC
ACTACGTCCTCCGGGAGCCGACCACGCCATCAGACCTTCCCCCCGTTGTC
TTGATCCATGGCTTCTCCTTGGGCTGTATCATCTGGAACGACGTGGCGGA
CGCCCTCGTCTCTCAAGGAGGCCGTCGGGTCTTGGCCTTTGACTTGTACG
GCCGCGGCTACAGCGACGCCGCCTTCCCCTGCGATGTCGAGCTCTTTTCT
GGGCAGTTGACGGAGCTGCTTTTTGCCCTCCAGCCAATCCTTGGCCCGGG
GCCTATCGATATATTCGGGACCTCGATGGGGGGGGCCATCGCCGTGCATT
TCACGCACTTGCATCCGGAGCGCGTGCGGCGACTCGCCCTCCTGGCGCCC
GCCGGCCTGCCCGTCAACGTGCCGTGGACCGCCAAGCTTGGGAAGCTCCC
CTTCTTCGGGGACATCTTCATGCCGATTTTGGGCCCCGTTTCGCTCCGGA
CGTATGCCCGCAAAGGCCATGCCTATCCGGACGACCCCGCTTTCCAGCCG
ACCTTCGCCGCCATGAGCCGCGTACTGCGCCGGCAGAGTCAGGTGAACCC
AGCTTTCTTCCCCGCGCTCCTCTCCACGCTGCGGGATTTCCCTCTGAACG
ACCTTGTGTGGGCCTACGAATCCGTGGCCAGAACCAGGAAGGACGGGAGC
GTGCTCGTGATATGGGGCGACAGGGACGTCATCACGCCGTTCATGCACGC
CTCGCGCGTTATCGATTTGCTGGGAGGGCCGGCCAAGGCGAAGCTGCTGG
TTCTGGACGACTGCGGCCATGTGGACCCCTTGGAGGTGCAACGAAACATC
GAGGAGATGATGCCCCCCCTTCTTGCGCACTTGGGATGAATGGGCAGCGG
ACAACGGG

Synonyms

Publications