rna4080, rna4080 (mRNA) Nannochloropsis gaditana

Overview
Namerna4080
Unique Namerna4080
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1407
Alignment locationCM002462.1:807174..808532 +

Link to JBrowse

Properties
Property NameValue
Productn-acetylglucosaminyltransferase
Orig transcript idgnl|cribi|Naga_100001g32.8236.mrna
Orig protein idgnl|cribi|Naga_100001g32.8236
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:807174..808532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g32gene3926Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4080rna4080-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26725.1cds4070Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4080 ID=rna4080|Name=rna4080|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp
ATGGCCCGACGGTCGCACTGGCTGTACGAGTGGTTCTTTATTGCCGCCTT
AGGTTCGAACTGGCTCCAAAGTCATGCAGGGCGATGGGGTGACGCAAGAT
TACAGGCTGCCACACTCAAACCACGCTCATTACTTATCCGTGACGCAAGA
TACTCAGCATCAAATTATCGTCGAGCTTCTAGTCACCGTCTGGCTTTCCA
TCTATGGGGCAAACACCACGAGCACGAAGGCAGGGCTTTGGAGCGCTCGA
CTGTTTGGCAGCGCTTCTCGAATACCACAGGCGACGCTACCAATTCAAGC
TCTACCACCATCCAGCAATTGGGCTCCTTTAGTACGCGAAAAAATCCCGT
GTTCGGAATTCTCTCCCAGGAGGACCTTGCACTTGACAAAGTCGAGCAAT
GCGTGTGCAGATGTTGGGGGCAGTGCAAGCCCTTTGTCTCAACCGCCGCC
AAGGCCTTGGCCGGTGGAACTATGTGCCTGTTTGGGGCTCATTACGCGCG
GTGTGCCGTCGTTTTTCATACCATGCGTGTCACTGGATGGCCTGCTTTCC
ATAAAGCGGTGCAGGAGCTTTTCAGAAGCTACAGTGCCGCCCGCGAGGTG
GTGAAGAGCGAAGTCAGTAAGGTCGTGCGACCTGGCGAGCTCTTTAGGGC
CGTCTCCTACGAGCTGAAAAGTGTTCACTTTCTCATCAAGGAGTCTCAAA
AGAAACTTGAAGACGGATATCTGAGTCGGATGGAGGCGATGGAAATTATA
CGGCGGGCGCAAATTGACAAGAAGCGCTTGGAGTACGAGGCCTGGTGCCT
TAATCAGGCCCTGGATTCGGTCGCGGCCCTGGGAGCAGCCATCGACTTAA
CAAGACTCCGGGAGGCAGGAAAGGGTCTATATACTGGCGCGCTTGCATGT
TTCGCGTCTTCCAGCAGCATGACTGTCTGCAAACTGTCTCTTGCTTTCGA
CTTGGGTGGTATTCTTGCAAACAACTTGAGTTGTGTATGCGCGACGTTGA
TGAGCCGGTGGCACTCCAAAGAACTTGCCCGCATCCTTCCGCCAGAGACT
CGTCGATTTATAAAGTTGTCCTTTCAGATCATGGGAGCTATTCAAGGTCT
TCTCATTGTAAATACTGTGCTGCCAAAGGTCAGCTTGCGCATTTCCTCCG
CTGCTTTGGGCGCTGCCTGGTTAACTGATGCAATCACTGAGATATGCGAT
CCTTGGATTCAGGCTCATGATGGGTGGAATCCAATGGCAAATCACCTGCC
ATATGCTGTTTTACAAGTTGGACTGACGATAGGAGGATACTATGTGCAAA
AAACTGTTTATCCGGGCAAAATTCCCTTGATAGTGGAGCGTGTCTTATCC
CCATTAGCATTTTTCGAGAAGCGCCTGAATTACCTCAACTCAATGTTTGC
CAAATGA
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protein sequence of rna4080

>rna4080-protein ID=rna4080-protein|Name=rna4080|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MASFRDQLAGFKGLRASLEKKEQKDAAMERKNEAARLASLRLGQRLVKAG
RFIRNSILLKRSEASGGCIKKRRMGLLILIIDSLPFEPLWREWMQRQNGA
TEVKVWIHAKHPDKVTSPWVLEKLIPRSFCPAWGSVDITRAELELLRVAV
EDASDIQLFLFASESCIPIQPLDTAVKSLFPVETSGTSSRPQSWLHFTDK
PNNGYSNQQQFEPLVKAGLPSTCIWKADQWVALTRPHAEAVLALPKAFGE
DLWPMFRAASASDEMYFPTCLALLGEIGPSGPKVVTEDAASSCLGSVDGS
KKEGGLEKESTLTKSTTGTGLGIEESMPPRAGEGVVNAGGKEQQQPVLRR
RLTYCCWGDSPKSPETYEGLPSHVLERGIREGSLLGRKFKAGTVKLEEWL
AHMRAMEGKGDEGFHVQGVGKDSGNAGQDAVGRQAKKRRREEGGPTGPQG
DA
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mRNA from alignment at CM002462.1:807174..808532+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4080 ID=rna4080|Name=rna4080|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp|location=Sequence derived from alignment at CM002462.1:807174..808532+ (Nannochloropsis gaditana)
ATGGCTAGTTTCAGAGACCAACTTGCTGGGTTTAAGGGCCTGAGGGCGTc
cctggagaagaaggaacaaAAAGACGCAGCAATGGAGCGCAAGAATGAGG
CTGCGAGATTGGCCAGCTTAAGACTTGGGCAGCGTCTTGTTAAAGCGGGT
AGGTTTATCCGTAACAGTATTTTGCTAAAACGCAGTGAGGCGAGTGGAGG
CTGCATCAAGAAGCGCAGGATGGGGCTTCTCATCCTGATCATTGATAGCC
TCCCGTTCGAGCCCCTGTGGCGCGAATGGATGCAACGACAAAATGGAGCG
ACAGAAGTCAAAGTCTGGATACATGCGAAGCACCCGGACAAAGTGACTTC
TCCGTGGGTATTAGAGAAGCTCATACCCAGGTCCTTTTGTCCTGCGTGGG
GCTCGGTTGATATTACACGTGCCGAGTTGGAGCTTTTGCGGGTCGCTGTG
GAAGATGCATCCGATATAcagctctttctcttcgcaTCTGAGTCGTGCAT
CCCCATTCAGCCCCTCGATACCGCCGTAAaatccctcttccccgtggaAA
CTTCCGGGACGTCCTCAAGACCACAAAGCTGGCTCCATTTTACAGACAAG
CCCAATAACGGCTATTCGAACCAACAGCAATTTGAGCCGCTCGTGAAAGC
AGGACTTCCGTCTACTTGCATCTGGAAGGCGGATCAATGGGTGGCTTTAA
CACGACCCCACGCAGAAGCAGTCTTGGCGTTGCCCAAGGCCTTCGGTGAA
GACTTGTGGCCGATGTTCAGAGCGGCGTCGGCCTCGGACGAGATGTATTT
CCCTACTTGCCTGGCGCTGCTTGGCGAGATAGGTCCAAGCGGACCAAAAG
TCGTCACGGAAGACGCGGCATCTTCGTGCTTGGGAAGCGTGGATGGAtcg
aagaaagaaggagggcttgagAAAGAGAGCACCCTGACGAAGAGCACTAC
AGGCACCGGCCTCGGAATAGAGGAGAGCATGCCTCCtagagcgggggagg
gtgttgTCaacgcgggagggaaagaacagcagcagcccgTGCTCAGACGA
CGACTGACGTACTGTTGCTGGGGAGATTCGCCGAAAAGCCCCGAGACCTA
CGAGgggcttccctcccacgtcttGGAGCGAGGGATAAGGGAGGGCAGTC
TGTTGGGGAGAAAGTTCAAGGCTGGGACTGTGAAACTCGAGGAGTGGCTG
GCGCACATGAGGgccatggaggggaagggagatgaaggatTTCATGtgca
gggggtggggaaggacagTGGCAACGCGGGCCAGGACGCGGTGGGACGac
aggcgaagaagaggcgaagggaggagggaggccccaCAGGTCCGCAGGGG
GATGCATGA
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Coding sequence (CDS) from alignment at CM002462.1:807174..808532+

>rna4080 ID=rna4080|Name=rna4080|organism=Nannochloropsis gaditana|type=CDS|length=1359bp|location=Sequence derived from alignment at CM002462.1:807174..808532+ (Nannochloropsis gaditana)
ATGGCTAGTTTCAGAGACCAACTTGCTGGGTTTAAGGGCCTGAGGGCGTc
cctggagaagaaggaacaaAAAGACGCAGCAATGGAGCGCAAGAATGAGG
CTGCGAGATTGGCCAGCTTAAGACTTGGGCAGCGTCTTGTTAAAGCGGGT
AGGTTTATCCGTAACAGTATTTTGCTAAAACGCAGTGAGGCGAGTGGAGG
CTGCATCAAGAAGCGCAGGATGGGGCTTCTCATCCTGATCATTGATAGCC
TCCCGTTCGAGCCCCTGTGGCGCGAATGGATGCAACGACAAAATGGAGCG
ACAGAAGTCAAAGTCTGGATACATGCGAAGCACCCGGACAAAGTGACTTC
TCCGTGGGTATTAGAGAAGCTCATACCCAGGTCCTTTTGTCCTGCGTGGG
GCTCGGTTGATATTACACGTGCCGAGTTGGAGCTTTTGCGGGTCGCTGTG
GAAGATGCATCCGATATAcagctctttctcttcgcaTCTGAGTCGTGCAT
CCCCATTCAGCCCCTCGATACCGCCGTAAaatccctcttccccgtggaAA
CTTCCGGGACGTCCTCAAGACCACAAAGCTGGCTCCATTTTACAGACAAG
CCCAATAACGGCTATTCGAACCAACAGCAATTTGAGCCGCTCGTGAAAGC
AGGACTTCCGTCTACTTGCATCTGGAAGGCGGATCAATGGGTGGCTTTAA
CACGACCCCACGCAGAAGCAGTCTTGGCGTTGCCCAAGGCCTTCGGTGAA
GACTTGTGGCCGATGTTCAGAGCGGCGTCGGCCTCGGACGAGATGTATTT
CCCTACTTGCCTGGCGCTGCTTGGCGAGATAGGTCCAAGCGGACCAAAAG
TCGTCACGGAAGACGCGGCATCTTCGTGCTTGGGAAGCGTGGATGGAtcg
aagaaagaaggagggcttgagAAAGAGAGCACCCTGACGAAGAGCACTAC
AGGCACCGGCCTCGGAATAGAGGAGAGCATGCCTCCtagagcgggggagg
gtgttgTCaacgcgggagggaaagaacagcagcagcccgTGCTCAGACGA
CGACTGACGTACTGTTGCTGGGGAGATTCGCCGAAAAGCCCCGAGACCTA
CGAGgggcttccctcccacgtcttGGAGCGAGGGATAAGGGAGGGCAGTC
TGTTGGGGAGAAAGTTCAAGGCTGGGACTGTGAAACTCGAGGAGTGGCTG
GCGCACATGAGGgccatggaggggaagggagatgaaggatTTCATGtgca
gggggtggggaaggacagTGGCAACGCGGGCCAGGACGCGGTGGGACGac
aggcgaagaagaggcgaagggaggagggaggccccaCAGGTCCGCAGGGG
GATGCATGA
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Synonyms
Publications