rna4077, rna4077 (mRNA) Nannochloropsis gaditana

Overview
Namerna4077
Unique Namerna4077
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1055
Alignment locationCM002462.1:801623..802967 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g35.8179.mrna
Orig protein idgnl|cribi|Naga_100001g35.8179
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:801623..802967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g35gene3923Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4077rna4077-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26668.1cds4067Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4077 ID=rna4077|Name=rna4077|organism=Nannochloropsis gaditana|type=mRNA|length=1055bp
CCCTCACGTCCAGGCGTTGCTCAAAAGAGTTCAATTGACACGACTCTACA
CGACAAAAAATGCATACTTCCGGTCCAGTTGCCTCCTTATTTCATTTTTA
TGGATTTGGTCGGTGTGGTGCGAATTGACGGGCCCTTCGCGGGTTTTAAA
ATACCATTCTTGTGCACTCGAACGCCCATGCGCGCGAGAATGATGATGCT
CAATCTGAGTGTCTTGTACATCTCATTGGACTCAAATCTCGCTGCTACAC
AACAGGCTCCAGATCAGGCTTCGTCCTTGTACACATTTTGTAACATGGCC
ACCAGCCGTGCCATCCGTCTTCGTTCAGAGAAGTTTGATAAAAATGTTAC
CAAGCGAGGAAATGTCCCTGTTGGAAAGGCGGCGAAGCGAGAAGAAGCTC
CACCCGTGAGCCCTGTACTTTTGGGTTTCTTCGTTTTTGTGGTTGTGGGT
TCCGCTTTCTTTCAGATCATCCGAACTGCTCAAAGCGGGCCCATTTTTTG
AGACAGTAAGAAATGCGATGCTACAAAACTTGGACCAAATTATCTTTGCG
GAAAGGAAAGAGACGACATGACGCGGGGAATGTATGGGAAGTTTGAAACT
TGGGCACGATGGAATTCGGACATGCGTCTGTGTTGCTCATCAAGGGATGG
TAGAATTCGATGGGGCATTGCTGGGCGGAATTACGAGTTGGCATTAACTT
GTAAGCTGGCAGTTTTGAAATAAAAGCGAACTATGATACTGCCATAGGTC
GAGCTTCGTGACGGCTTTTCCCTCGCGGAAGGCCTTTGAATTATTTGCGC
CATTTTATCCCGGATCATATGTACACACTATGTACACTCAGGGTGGCCTT
TCAGGAGTGATCCTTTTTGACATGCAGCCAATAATATAAAGAGTCCTCTC
GCTCCAAAGCAGCTTGGTGACAAGTTGTTCTGTGAGTAATGAACGCACTC
ATTTCCTAATATCTTGTGTAGCAGGGTATGTGCCCCGAGCGCTTCGCGTG
TCTACTGATAAGTCAAACCCCCCGCTGCCTGTCACGAACTTTGAGGACAT
ATCTC
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protein sequence of rna4077

>rna4077-protein ID=rna4077-protein|Name=rna4077|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MTVGACTPPDHMHIASVAGNLTDNETLEGGCPGTCMAPARQTREVVESDT
RSFSTPSSATMNNQTTPSNMTLNTYSCPVEGGSNDYKGKGDSGAASGNEL
ASGKVHEKAAPETEDEVICLNLSTLLPKKSKHGRIGGSLYRALRDAGVDV
AALGIPRGRPPRTKVGQKRPKRPTLLSFIKSGAELPMVPGAPRLRIVNMD
LMGDGEQLVEVEEPTVYGQGLGLRQATNKQRVTGRRRRSDVDKEDVDDKR
LRGMGKRGEEPTDLAADEAAATELLLLLGENNV
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mRNA from alignment at CM002462.1:801623..802967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4077 ID=rna4077|Name=rna4077|organism=Nannochloropsis gaditana|type=mRNA|length=1345bp|location=Sequence derived from alignment at CM002462.1:801623..802967+ (Nannochloropsis gaditana)
ACAGTCAGCCTTCCACCACACCTCTTGTCTTTATTTAAGACATGACTGTT
GGAGCGTGCACACCTCCCGACCATATGCATATCGCAAGTGTCGCAGGCAA
TCTCACCGACAATGAAACATTAGAAGGGGGCTGTCCTGGCACATGCATGG
CCCCCGCAAGGCAGACCCGAGAGGTTGTTGAGAGCGACACGCGTAGTTTC
AGCACACCATCCTCCGCAACCATGAACAATCAGACAACACCAAGCAATAT
GACATTAAATACTTATTCCTGTCCTGTAGAAGGTGGTAGTAACGATtaca
aaggaaagggcgacTCTGGTGCTGCCAGTGGGAATGAACTTGCCTCTGGC
AAAGTCCACGAAAAGGCTGCCCCAGAGACGGAAGATGAAGTAATTTGCCT
CAATCTCTCCACGCTTCTACCCAAGAAATCGAAACACGGACGGATCGGTG
GCTCCCTGTACAGGGCTCTGCGGGATGCAGGGGTCGATGTGGCCGCTTTG
GGGATCCCGCGGGGGCGGCCGCCACGCACCAAAGTTGGTCAGAAGCGACC
GAAGCGCCCGACGCTGCTGAGTTTCATCAAGTCAGGGGCAGAATTACCGA
TGGTCCCCGGGGCCCCGCGCTTGCGCATCGTCAACATGGACCTGATGGGA
GATGGCGAGCAGTTGGTGGAAGTTGAGGAGCCGACAGTGTACGGACAGGG
CCTAGGGTTGCGACAGGCAACCAACAAGCAGCGAGTGACGGGCCGGAGGC
GTAGGAGCGATGTGGataaggaggacgtggacgacaaGCGGCTgaggggg
atgggaaaaaggggagaggagcccACCGACTTGGCAGCTGACGAGGCAGC
TGCGACAGAACTCTTGCTTTTGCTGGGGGAGAACAATGTCTAAAGACTCA
AAAAGTAGCATTTCCGACCCATGATTCGGTGCTAGCGGCGTTGTCACGGC
AGGATAAATTGACAGATCGTGGTCTTGAGATTGTaggaggagcgagcgag
cGCGGCGCCGGGAAAAAAGATGCATATGGGAGCCCCTCGAGTACGCCCGC
AGCAGCACAAGCTTGACAGGCTGTGAAAAGCGAAACTCGACTAGGGTACA
GATATAGCTGTGGACGAGATGTCCCATGCCGTGTGCCTGCCACCCTAGAG
CGAGTTTCTTCACAAGCATACACTGTCCGCTTTAGGATTGAAAGGGTTGC
ATAGCCCGCCAAAATATAGAGATAGAAGTGTAGCATGCATTTTTGCCTGA
ACAGGCAGGGGTACGAGTAGGATCACTGCTCCAGCCCAAGAAAAAATCGA
CCGACATACAAATTATGCACTGGAAGCAAGCATCGAGTCTTTGCT
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Coding sequence (CDS) from alignment at CM002462.1:801623..802967+

>rna4077 ID=rna4077|Name=rna4077|organism=Nannochloropsis gaditana|type=CDS|length=852bp|location=Sequence derived from alignment at CM002462.1:801623..802967+ (Nannochloropsis gaditana)
ATGACTGTTGGAGCGTGCACACCTCCCGACCATATGCATATCGCAAGTGT
CGCAGGCAATCTCACCGACAATGAAACATTAGAAGGGGGCTGTCCTGGCA
CATGCATGGCCCCCGCAAGGCAGACCCGAGAGGTTGTTGAGAGCGACACG
CGTAGTTTCAGCACACCATCCTCCGCAACCATGAACAATCAGACAACACC
AAGCAATATGACATTAAATACTTATTCCTGTCCTGTAGAAGGTGGTAGTA
ACGATtacaaaggaaagggcgacTCTGGTGCTGCCAGTGGGAATGAACTT
GCCTCTGGCAAAGTCCACGAAAAGGCTGCCCCAGAGACGGAAGATGAAGT
AATTTGCCTCAATCTCTCCACGCTTCTACCCAAGAAATCGAAACACGGAC
GGATCGGTGGCTCCCTGTACAGGGCTCTGCGGGATGCAGGGGTCGATGTG
GCCGCTTTGGGGATCCCGCGGGGGCGGCCGCCACGCACCAAAGTTGGTCA
GAAGCGACCGAAGCGCCCGACGCTGCTGAGTTTCATCAAGTCAGGGGCAG
AATTACCGATGGTCCCCGGGGCCCCGCGCTTGCGCATCGTCAACATGGAC
CTGATGGGAGATGGCGAGCAGTTGGTGGAAGTTGAGGAGCCGACAGTGTA
CGGACAGGGCCTAGGGTTGCGACAGGCAACCAACAAGCAGCGAGTGACGG
GCCGGAGGCGTAGGAGCGATGTGGataaggaggacgtggacgacaaGCGG
CTgagggggatgggaaaaaggggagaggagcccACCGACTTGGCAGCTGA
CGAGGCAGCTGCGACAGAACTCTTGCTTTTGCTGGGGGAGAACAATGTCT
AA
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Synonyms
Publications