rna4072, rna4072 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4072
Unique Name	rna4072
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1896
Alignment location	CM002462.1:785961..788150 +

Link to JBrowse

Properties


Property Name	Value
Product	heat shock protein 70
Orig transcript id	gnl\|cribi\|Naga_100001g41.8280.mrna
Orig protein id	gnl\|cribi\|Naga_100001g41.8280
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:785961..788150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g41	gene3918	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4072	rna4072-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26769.1	cds4062	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:785961..788150+
coding sequence from alignment at CM002462.1:785961..788150+

mRNA sequence

>rna4072 ID=rna4072|Name=rna4072|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp
ATGAGTTTTTTGAGCCGCACTTTATCCCGTACAGCGACGCGCACGGCCAC
TCACACCATCCTGGGAGCCCCGGCACGTACCCCCCGCGCCCACCGTCCCC
TCGCTCTGCCACTCAGCTGTTCGACTTCAAGAGCTGGAGGATGGGCTGGC
TCCCGCGCCCTGCACTTCCAGGCCGCTCAAGCCTCGGACTCGGAGGTTTC
CCGTGTCCTCCGTGAGCAGGAGACGGACGTGCTGATACTCGGGTGCGGCG
TCGCGGGGTGTTCCACCGCGCTCAAGGCCGCCGAGAAAGGGCTGCGTGTC
GTCATGGTCACGTCGGCCACGGATCCGCTGGACTGCAATTCCTTTTGGGC
CCAGGGGGGAATCATTTACAAGGCCTCGGACGACACCCCTGCATTGCTCT
CGGAAGATATCATGGTGGCGGGGGCGGGGGTAAACGATCGCAAGGCGGTA
TCCAAGCTTGCCATGGACGGGCCGGGATGCGTGGAGGACGTGCTTCTGCG
CCTGGCGCCCGTGCCCTTCGACCGCCACCCCGACGGCTCCCTCGCCCTCT
GCCTTGAGGCCTCTCACAACCGAGCACGGATCATCCATTGGCGGGATCAC
ACGGGGAGGGCCATCACGGAAAGTTTGCAGGAAACAGTAGCGGCGCACCC
AAACATCCTCCTGGTGTCAGGTGTGACTGCCGTCGACTTGGCGGTGGCGG
AGGGCGTGGAGGAGCACGAGGACGAGCCTCCCCAAAAAGGACAGGAGCAG
CAGCGTCTGAACCATGACCACGGTCGCCGCTGCCTCGGTGCCCATTTGAT
GCGCGTGGCCCCCGACGCGACCGATCCCGTGCCTGTGCGTGCCGCAGCGA
CCGTCCTGGCGACAGGAGGCCTGGGTGACCTCTACGAGCACACCTCCAAC
CCGGCCTCGGCCCGCGGAGATGGCTTTGCCATGGCCTTGCGCGCCGGTGC
CGCCCTTCAGAACATGGAGTACGTTCAGTTCCACCCCACCACGCTCCATC
TCCCGGGAGAGCGCAGCTTTCTGGTTACGGAGGCTCTGCGAGGGGAAGGG
GCCCGGCTCCTGAACATGCAGGGGGAGGCCTTCGCACGTCGCTACCACCC
GCAAGGCGAGCTGGCGCCTCGGGACGTGGTTTCTAGGATGATCGTGAGCG
AGATGGCCAGGACAGGAGCAGAACACATGTTCTTAGACATCTCCCACCGA
GACGCGGCCTGGCTACGGGGACGCTTTCCCGCCATCGACGCCCATTGCCG
GGCCCGGGGGTTGGACATGACCAAGCAGGCCCTGCCTGTGGTTCCGGCGG
CTCATTACTTCTGCGGTGGAGTCGTTACTGACTTGGAGGGGCGAACGAGC
CTTCCTGGCCTCTTCGCTGCGGGAGAAGTGGCGTGCACGGGCCTTCATGG
CGCGAACCGACTGGCCTCCACCTCATTGCTGGAGGGTTTGGTGTGGGGGG
TGGCGATCGCCGAGCTCCTGGCGAAGAAGCGTAAAGACGGCCAGGACGCT
CTCTGGAGGAAAGTGGTGAATACCGCCCCTCTGGCTCCGATCCCTCATTC
CCTGGGCGAGTCGAATCAAGCTTTGCCCGTGGCACCTCCTGCACAGGTGG
AGGCTTACATGGCTGAGATTCGTCGCACCCTGTGGGAGGATGTGGGAGTT
GTGCGTCGTCCCGAGGGTCTGGCGTATGCGAGTCGTCACTTGCGCCGGGT
CGAAGCGGAGGTGCAAGCTTTCTATACCTCGACGCGCTTGAGCAAGGACA
CAGTCTCACTGCGCAATGCGGCGGAGACAGCACGGTTGATTGCACGGGCT
GCAGCTCGCAACACCGAGAGCATTGGGACGCATTACGTGGAGACCGATAC
GGAGGAAGAGGAGCAGGAGCAGATGCTGCATAAAGCCGTGCTTTAG

protein sequence of rna4072

>rna4072-protein ID=rna4072-protein|Name=rna4072|organism=Nannochloropsis gaditana|type=polypeptide|length=685bp
MLSRFTSSAKGLSPSAMSRIGSQGGAVRNLTRSGAAQKAQKDLGDIIGID
LGTTNSCVAIMEGRAPRVIENAEGARTTPSVVAFANDGQRLVGLPAKRQA
VTNPENTLYAVKRLIGRKFTDKEVQNVKKLVPYKIIKADSSEDAWVEAGG
KRLSPSQVGSMVLGKMKETAEGFLGRPITKAVVTVPAYFNDSQRQATKDA
GRIAGLDVQRIINEPTAAALAYGLDKAEGKLISVFDLGGGTFDVSILEIS
GGVFEVKATNGDTMLGGEDFDEELLKHLAAEFRKDSGIDLSKDRLAMQRL
REAAEKAKRELDGLAQTEVSLPFITADQTGPKHLNVKVSRAQFEKLVDSL
VQRTIQPCKNCLKDASVEKKDINEVLLVGGMTRMPKVQSVVEDFFGRKPS
KGVNPDEVVAMGAAIQGGVLRGDVKDVLLLDVTPLSLGIETLGGMFTRLI
NRNTTIPTKKGQVFSTAADNQSQVQIKVLQGERELAADNKLLGSFDLVGI
PPAPRGLPQIDVTFDIDADGIMHVSAKDKGTGKEQAIVIQSSGGLNEDEI
QNMVKDAEAHKAADEERKKLIEARNEADSLVYSTEKSLTEHGAKLSDEVK
EEIQNTIAEAKKALEGEDAELLQEKVKALQQAALKIGEAIYGKGGAGAGG
PTGEGGEGATGAGDKENVQDAEFKEKDEEAGAGKK

mRNA from alignment at CM002462.1:785961..788150+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4072 ID=rna4072|Name=rna4072|organism=Nannochloropsis gaditana|type=mRNA|length=2190bp|location=Sequence derived from alignment at CM002462.1:785961..788150+ (Nannochloropsis gaditana)
ATGTTGTCTCGTTTTACCTCGTCGGCCAAGGGCCTTTCGGTACGTGCATC
ACTTTTCTCCTTGACGGAGGGCGCTCATCCCTTGTCTTATCCCCTGTGCG
GCCTTCCCGGTGCTCTTTGGGAGTGTCGGAGTCACTTACACCGCATGCAT
TCACAACTTTCTACTATGCAGCCCTCGGCAATGTCCCGAATCGGCAGCCA
GGGGGGAGCTGTTCGAAACCTGACACGAAGTGGCGCTGCGCAAAAGGCAC
AGAAGGATTTAGGTGATATCATCGGCATTGATCTGGGCACGACAAATTCT
TGTGTTGCCATTATGGAAGGCCGTGCTCCTCGTGTCATTGAAAATGCTGA
GGGCGCGCGGACGACGCCCTCTGTAGTGGCGTTTGCGAATGACGGCCAGC
GCTTGGTGGGATTACCTGCGAAGCGTCAGGCAGTCACCAACCCCGAGAAC
ACCTTGTACGCCGTGAAGCGTCTAATCGGCAGGAAATTCACGGACAAGGA
AGTACAGAACGTGAAAAAGCTAGTACCGTACAAGATTATCAAGGCCGATA
GCTCAGAAGACGCgtgggtggaggcaggagggaagcgccTCTCCCCGTCG
CAGGTGGGCTCGATGGTGTtggggaagatgaaggagacgGCGGAAGGGTT
CCTAGGGCGGCCCATTACCAAGGCGGTAGTCACTGTGCCAGCGTATTTCA
ATGACTCTCAGCGGCAAGCGACCAAGGATGCCGGACGCATAGCTGGGCTG
GACGTGCAGAGGATCATCAACGAGCCCACGGCGGCGGCATTAGCCTACGG
TCTGGACAAAGCGGAAGGGAAGCTGATCTCGGTGTTCGATTTGGGGGGAG
GCACTTTCGACGTGTCGATATTGGAGATCTCCGGCGGCGTGTTTGAAGTG
AAGGCGACGAACGGGGACACCAtgctggggggggaggatttCGACGAGGA
GCTTTTGAAGCACCTGGCGGCCGAGTTCCGCAAGGACTCGGGGATCGACC
TTTCCAAAGACAGGCTGGCCATGCAGCGCttgcgggaggcggcggagaag
gcaaagCGGGAGCTGGACGGCCTGGCTCAGACGGAAGTGTCGCTCCCTTT
TATCACGGCGGACCAAACGGGTCCCAAGCACTTGAATGTGAAGGTGTCGC
GGGCGCAATTTGAGAAACTTGTGGATTCCTTGGTCCAGCGCACCATCCAA
CCCTGCAAGAATTGCCTGAAGGACGCCTccgtggagaagaaggacataAA
CGAGGTCCTTCTGGTGGGGGGCATGACCCGGATGCCCAAGGTCCAGAgtg
tggtggaggacttcTTCGGACGCAAGCCCAGCAAGGGCGTGAATCCggac
gaggtggtggccatggGCGCGGCCATCCAAGGAGGCGTCCTCCGGGGGGA
CGTGAAGGACGTGCTGCTCCTGGACGTGACCCCGCTCTCCCTGGGCATCG
AGACATTGGGCGGGATGTTCACGCGGCTGATTAACCGAAACACGACGATT
CCGACCAAAAAGGGGCAGGTCTTTTCTACGGCGGCAGACAATCAGTCCCA
GGTGCAAATCAAGGTGCTgcaaggagagcgggaaTTGGCCGCGGACAACA
AGTTACTGGGTTCTTTTGACTTGGTCGGcattcctcccgcccctcgcggC
CTTCCCCAGATCGACGTGACCTTCGACATCGATGCGGACGGAATCATGCA
CGTCTCGGCGAAGGACAAGGGCACAGGGAAGGAACAGGCCATTGTCATCC
AGTCGAGTGGTGGCCTGAACGAGGATGAGATCCAGAACATGGtgaaggac
gcggaggcgcacaaggcggcggacgaggagaggaagaagctgaTTGAGGC
CCGAAATGAGGCCGACTCGTTAGTCTACAGCACCGAAAAATCTTTGACCG
AACATGGCGCGAAACTGAGCGACGAAGTCAAGGAGGAAATTCAAAACACC
ATTGcagaggcaaagaaggcattggaaggggaggacgccgaaTTGTTGCA
GGAGAAGGTCAAGGCTTTGCAACAAGCCGCTTTGAAGATCGGGGAGGCCA
TctatggaaagggaggggcgggagcaggggggCCGACGGGGGAAGGTGGC
GAAGGGGCCACAGGGGCAGGAGATAAGGAGAATGTGCAGGACGCAGAGTT
CAaagagaaagacgaggaggcgggagcagggaagAAATAA

Coding sequence (CDS) from alignment at CM002462.1:785961..788150+

>rna4072 ID=rna4072|Name=rna4072|organism=Nannochloropsis gaditana|type=CDS|length=4116bp|location=Sequence derived from alignment at CM002462.1:785961..788150+ (Nannochloropsis gaditana)
ATGTTGTCTCGTTTTACCTCGTCGGCCAAGGGCCTTTCGCCCTCGGCAAT
GTCCCGAATCGGCAGCCAGGGGGGAGCTGTTCGAAACCTGACACGAAGTG
GCGCTGCGCAAAAGGCACAGAAGGATTTAGGTGATATCATCGGCATTGAT
CTGGGCACGACAAATTCTTGTGTTGCCATTATGGAAGGCCGTGCTCCTCG
TGTCATTGAAAATGCTGAGGGCGCGCGGACGACGCCCTCTGTAGTGGCGT
TTGCGAATGACGGCCAGCGCTTGGTGGGATTACCTGCGAAGCGTCAGGCA
GTCACCAACCCCGAGAACACCTTGTACGCCGTGAAGCGTCTAATCGGCAG
GAAATTCACGGACAAGGAAGTACAGAACGTGAAAAAGCTAGTACCGTACA
AGATTATCAAGGCCGATAGCTCAGAAGACGCgtgggtggaggcaggaggg
aagcgccTCTCCCCGTCGCAGGTGGGCTCGATGGTGTtggggaagatgaa
ggagacgGCGGAAGGGTTCCTAGGGCGGCCCATTACCAAGGCGGTAGTCA
CTGTGCCAGCGTATTTCAATGACTCTCAGCGGCAAGCGACCAAGGATGCC
GGACGCATAGCTGGGCTGGACGTGCAGAGGATCATCAACGAGCCCACGGC
GGCGGCATTAGCCTACGGTCTGGACAAAGCGGAAGGGAAGCTGATCTCGG
TGTTCGATTTGGGGGGAGGCACTTTCGACGTGTCGATATTGGAGATCTCC
GGCGGCGTGTTTGAAGTGAAGGCGACGAACGGGGACACCAtgctgggggg
ggaggatttCGACGAGGAGCTTTTGAAGCACCTGGCGGCCGAGTTCCGCA
AGGACTCGGGGATCGACCTTTCCAAAGACAGGCTGGCCATGCAGCGCttg
cgggaggcggcggagaaggcaaagCGGGAGCTGGACGGCCTGGCTCAGAC
GGAAGTGTCGCTCCCTTTTATCACGGCGGACCAAACGGGTCCCAAGCACT
TGAATGTGAAGGTGTCGCGGGCGCAATTTGAGAAACTTGTGGATTCCTTG
GTCCAGCGCACCATCCAACCCTGCAAGAATTGCCTGAAGGACGCCTccgt
ggagaagaaggacataAACGAGGTCCTTCTGGTGGGGGGCATGACCCGGA
TGCCCAAGGTCCAGAgtgtggtggaggacttcTTCGGACGCAAGCCCAGC
AAGGGCGTGAATCCggacgaggtggtggccatggGCGCGGCCATCCAAGG
AGGCGTCCTCCGGGGGGACGTGAAGGACGTGCTGCTCCTGGACGTGACCC
CGCTCTCCCTGGGCATCGAGACATTGGGCGGGATGTTCACGCGGCTGATT
AACCGAAACACGACGATTCCGACCAAAAAGGGGCAGGTCTTTTCTACGGC
GGCAGACAATCAGTCCCAGGTGCAAATCAAGGTGCTgcaaggagagcggg
aaTTGGCCGCGGACAACAAGTTACTGGGTTCTTTTGACTTGGTCGGcatt
cctcccgcccctcgcggCCTTCCCCAGATCGACGTGACCTTCGACATCGA
TGCGGACGGAATCATGCACGTCTCGGCGAAGGACAAGGGCACAGGGAAGG
AACAGGCCATTGTCATCCAGTCGAGTGGTGGCCTGAACGAGGATGAGATC
CAGAACATGGtgaaggacgcggaggcgcacaaggcggcggacgaggagag
gaagaagctgaTTGAGGCCCGAAATGAGGCCGACTCGTTAGTCTACAGCA
CCGAAAAATCTTTGACCGAACATGGCGCGAAACTGAGCGACGAAGTCAAG
GAGGAAATTCAAAACACCATTGcagaggcaaagaaggcattggaagggga
ggacgccgaaTTGTTGCAGGAGAAGGTCAAGGCTTTGCAACAAGCCGCTT
TGAAGATCGGGGAGGCCATctatggaaagggaggggcgggagcagggggg
CCGACGGGGGAAGGTGGCGAAGGGGCCACAGGGGCAGGAGATAAGGAGAA
TGTGCAGGACGCAGAGTTCAaagagaaagacgaggaggcgggagcaggga
agAAATAAATGTTGTCTCGTTTTACCTCGTCGGCCAAGGGCCTTTCGCCC
TCGGCAATGTCCCGAATCGGCAGCCAGGGGGGAGCTGTTCGAAACCTGAC
ACGAAGTGGCGCTGCGCAAAAGGCACAGAAGGATTTAGGTGATATCATCG
GCATTGATCTGGGCACGACAAATTCTTGTGTTGCCATTATGGAAGGCCGT
GCTCCTCGTGTCATTGAAAATGCTGAGGGCGCGCGGACGACGCCCTCTGT
AGTGGCGTTTGCGAATGACGGCCAGCGCTTGGTGGGATTACCTGCGAAGC
GTCAGGCAGTCACCAACCCCGAGAACACCTTGTACGCCGTGAAGCGTCTA
ATCGGCAGGAAATTCACGGACAAGGAAGTACAGAACGTGAAAAAGCTAGT
ACCGTACAAGATTATCAAGGCCGATAGCTCAGAAGACGCgtgggtggagg
caggagggaagcgccTCTCCCCGTCGCAGGTGGGCTCGATGGTGTtgggg
aagatgaaggagacgGCGGAAGGGTTCCTAGGGCGGCCCATTACCAAGGC
GGTAGTCACTGTGCCAGCGTATTTCAATGACTCTCAGCGGCAAGCGACCA
AGGATGCCGGACGCATAGCTGGGCTGGACGTGCAGAGGATCATCAACGAG
CCCACGGCGGCGGCATTAGCCTACGGTCTGGACAAAGCGGAAGGGAAGCT
GATCTCGGTGTTCGATTTGGGGGGAGGCACTTTCGACGTGTCGATATTGG
AGATCTCCGGCGGCGTGTTTGAAGTGAAGGCGACGAACGGGGACACCAtg
ctggggggggaggatttCGACGAGGAGCTTTTGAAGCACCTGGCGGCCGA
GTTCCGCAAGGACTCGGGGATCGACCTTTCCAAAGACAGGCTGGCCATGC
AGCGCttgcgggaggcggcggagaaggcaaagCGGGAGCTGGACGGCCTG
GCTCAGACGGAAGTGTCGCTCCCTTTTATCACGGCGGACCAAACGGGTCC
CAAGCACTTGAATGTGAAGGTGTCGCGGGCGCAATTTGAGAAACTTGTGG
ATTCCTTGGTCCAGCGCACCATCCAACCCTGCAAGAATTGCCTGAAGGAC
GCCTccgtggagaagaaggacataAACGAGGTCCTTCTGGTGGGGGGCAT
GACCCGGATGCCCAAGGTCCAGAgtgtggtggaggacttcTTCGGACGCA
AGCCCAGCAAGGGCGTGAATCCggacgaggtggtggccatggGCGCGGCC
ATCCAAGGAGGCGTCCTCCGGGGGGACGTGAAGGACGTGCTGCTCCTGGA
CGTGACCCCGCTCTCCCTGGGCATCGAGACATTGGGCGGGATGTTCACGC
GGCTGATTAACCGAAACACGACGATTCCGACCAAAAAGGGGCAGGTCTTT
TCTACGGCGGCAGACAATCAGTCCCAGGTGCAAATCAAGGTGCTgcaagg
agagcgggaaTTGGCCGCGGACAACAAGTTACTGGGTTCTTTTGACTTGG
TCGGcattcctcccgcccctcgcggCCTTCCCCAGATCGACGTGACCTTC
GACATCGATGCGGACGGAATCATGCACGTCTCGGCGAAGGACAAGGGCAC
AGGGAAGGAACAGGCCATTGTCATCCAGTCGAGTGGTGGCCTGAACGAGG
ATGAGATCCAGAACATGGtgaaggacgcggaggcgcacaaggcggcggac
gaggagaggaagaagctgaTTGAGGCCCGAAATGAGGCCGACTCGTTAGT
CTACAGCACCGAAAAATCTTTGACCGAACATGGCGCGAAACTGAGCGACG
AAGTCAAGGAGGAAATTCAAAACACCATTGcagaggcaaagaaggcattg
gaaggggaggacgccgaaTTGTTGCAGGAGAAGGTCAAGGCTTTGCAACA
AGCCGCTTTGAAGATCGGGGAGGCCATctatggaaagggaggggcgggag
caggggggCCGACGGGGGAAGGTGGCGAAGGGGCCACAGGGGCAGGAGAT
AAGGAGAATGTGCAGGACGCAGAGTTCAaagagaaagacgaggaggcggg
agcagggaagAAATAA

Synonyms

Publications