rna4071, rna4071 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4071
Unique Name	rna4071
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1362
Alignment location	CM002462.1:783403..785298 +

Link to JBrowse

Properties


Property Name	Value
Product	l-aspartate oxidase
Orig transcript id	gnl\|cribi\|Naga_100001g42.8243.mrna
Orig protein id	gnl\|cribi\|Naga_100001g42.8243
Gene	NADB
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:783403..785298 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NADB	gene3917	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4071	rna4071-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26732.1	cds4061	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:783403..785298+
coding sequence from alignment at CM002462.1:783403..785298+

mRNA sequence

>rna4071 ID=rna4071|Name=rna4071|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp
ATGTTATACGCGCAGCTCATATTAGGCAAAAAGGGCACCCTTGGTAAGGT
GTGGCTTGCCGTACAGTCGGAAAAGAAGCTAAACCGCCAATTGATTTTTC
AAACCGACCTGACGAAAAGCGCAGACAAAATTGCTAATCCGAAAGGAGAA
GTGTTGCCCCTCCGTGTATCCGGCAGCTTGTTGCTGGGCGTCGTCCGCAT
TTATTCCCACAAAGTGCGTTATTTGAGCACGGATTGTGATGACGCGCTTG
CCAAAATGAAAGTCGCTTTCCGCCCGGATGCGCTCTCCCAGGACATTTTT
CCGACCAGCGTCCAACCCCTTACTCCCCACATTTCCTGTGCACCGTCTAC
CACGGTGGGGGCCGTGCCTGGGAATGGGTCCTGCGTGAGGTTGCGAACGA
CAAGGAAGCTGCCAGGGAGAGAAGGAGGGAGACAAGAAGGGGCCGGGAGT
GGAAGGGTGCAAAAGCGGCGAAGGGAGGAGAAGGAGGGGTGCGAATGCGA
AGGGAGGAGGGAAGAAGGGGGGGGAGGGGGGGCAGGCGACACGGAAGATG
GCTTCAGGCTAGATGACCAGGATAACGGCTACTCGGATCTGGAAATGCAC
TTCGAAGGTCATGCTTTCCAAGATCCCACCTCTGCGGAGGAGGGAATGGA
AGACGGGCATGGAGAAGGAGACGAAGTGGAGGCAGAGGAGTGGGGGGGGG
AAGAGGAGGAGGAGGAGAGGGAAGAAGGAGAGTTCACCAGGACAAACGCA
TGGGGCTCTCCAGTAGGAGAGGAGGACGACGTGGCTGAGGCGAAACCATC
CACGCGATGGCATCCCAATACCGTGCATATGTGTAGATTGCTGCGTTCTC
GCTTAGCTGCGGCGGCGAGGCTACAGGAAGAGGGAGGAGGAAATGGATCA
GGTCCTGCCTCATCTCAACTAACCTTCGGGGAGCTCACTCGCAATGCGCG
ACGAACCAAAGCTGCAAACATGTTTTGGGAGGTCTTGCAACTGAAAACAT
GGGACTTTATTGACTGCGGTCAAGAGGAGGCGTACGGTGAAATCATCATC
GAGCCTGCAGCTCGTCTTCACGAAGCAATTCCCGGCGAGGGCCCCAAAAG
AGAGGCGGAGCTCACGCGGGCTTCTGCACCATTTGCCTGTCTACCACAAT
CAGGAGAAGGATTTAAAACAACCAAACCTCGGAAGGGTCCGAAGAATGAA
TCGAGCAAAGGCGACCTGGTCATACAGCAAGAAGTGGGCTTATTCCGTAA
TCTCAAAGTAAACAACTTCCGCAGCTCGGATCTCGCCATTAATCCAGTTC
TTGTCTGCAGTGTGACACAAGACGCTGGAAGATTTTTATTGTACCAGAGT
TACCCAGAATAG

protein sequence of rna4071

>rna4071-protein ID=rna4071-protein|Name=rna4071|organism=Nannochloropsis gaditana|type=polypeptide|length=631bp
MSFLSRTLSRTATRTATHTILGAPARTPRAHRPLALPLSCSTSRAGGWAG
SRALHFQAAQASDSEVSRVLREQETDVLILGCGVAGCSTALKAAEKGLRV
VMVTSATDPLDCNSFWAQGGIIYKASDDTPALLSEDIMVAGAGVNDRKAV
SKLAMDGPGCVEDVLLRLAPVPFDRHPDGSLALCLEASHNRARIIHWRDH
TGRAITESLQETVAAHPNILLVSGVTAVDLAVAEGVEEHEDEPPQKGQEQ
QRLNHDHGRRCLGAHLMRVAPDATDPVPVRAAATVLATGGLGDLYEHTSN
PASARGDGFAMALRAGAALQNMEYVQFHPTTLHLPGERSFLVTEALRGEG
ARLLNMQGEAFARRYHPQGELAPRDVVSRMIVSEMARTGAEHMFLDISHR
DAAWLRGRFPAIDAHCRARGLDMTKQALPVVPAAHYFCGGVVTDLEGRTS
LPGLFAAGEVACTGLHGANRLASTSLLEGLVWGVAIAELLAKKRKDGQDA
LWRKVVNTAPLAPIPHSLGESNQALPVAPPAQVEAYMAEIRRTLWEDVGV
VRRPEGLAYASRHLRRVEAEVQAFYTSTRLSKDTVSLRNAAETARLIARA
AARNTESIGTHYVETDTEEEEQEQMLHKAVL

mRNA from alignment at CM002462.1:783403..785298+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4071 ID=rna4071|Name=rna4071|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp|location=Sequence derived from alignment at CM002462.1:783403..785298+ (Nannochloropsis gaditana)
ATGAGTTTTTTGAGCCGCACTTTATCCCGTACAGCGACGCGCACGGCCAC
TCACACCATCCTGGGAGCCCCGGCACGTAccccccgcgcccaccgTCCCC
TCGCTCTGCCACTCAGCTGTTCGACTTcaagagctggaggatgGGCTGGC
TCCCGCGCCCTGCACTTCCAGGCCGCTCAAGCCTCGGACTCGGAGGTTTC
CCGTGTCCTCCGTGAGCAGGAGACGGACGTGCTGATACTCGGGTGCGGCG
TCGCGGGGTGTTCCACCGCGCTCAAGGCCGCCGAGAAAGGGCTGCGTGTC
GTCATGGTCACGTCGGCCACGGATCCGCTGGACTGCAATTCCTTTTGGGC
CCAGGGGGGAATCATTTACAAGGCCTCGGACGACACCCCTGCATTGCTCT
CGGAAGATATCAtggtggcgggggcgggggtaAACGATCGCAAGGCGGTA
TCCAAGCTTGCCATGGACGGGCCGGGatgcgtggaggacgtgcttCTGCG
CCTGGCGCCCGTGCCCTTCGACCGCCACCCCGAcggctccctcgccctct
gcctTGAGGCCTCTCACAACCGAGCACGGATCATCCATTGGCGGGATCAC
ACGGGGAGGGCCATCACGGAAAGTTTGCAGGAAACAGTAGCGGCGCACCC
AAACATCCTCCTGGTGTCAGGTGTGACTGCCGTCGacttggcggtggcgg
agggcgtggaggagcacgaggacgAGCCTCCCCAAAAAggacaggagcag
cagcgtCTGAACCATGACCACGGTCGCCGCTGCCTCGGTGCCCATTTGAT
GCGCGTGGCCCCCGACGCGACCGATCCCGTGCCTGTGCGTGCCGCAGCGA
CCGTCCTGGCGACAGGAGGCCTGGGTGACCTCTACGAGCACACCTCCAAC
CCGGCCTCGGCCCGCGGAGATGGCTTTGCCATGGCCTTGCGCGCCGGTGC
CGCCCTTCAGAACATGGAGTACGTTCAGTTCCACCCCACCACGCTCCATC
TCCCGGGAGAGCGCAGCTTTCTGGTTACGGAGGCTctgcgaggggaaggg
gcccGGCTCCTGAACatgcagggggaggccttCGCACGTCGCTACCACCC
GCAAGGCGAGCTGGCGCCTCGGGACGTGGTTTCTAGGATGATCGTGAGCG
AGATGGCCAGGACAGGAGCAGAACACATGTTCTTAGACATCTCCCACCGA
GACGCGGCCTGGCTACGGGGACGCTTTCCCGCCATCGACGCCCATTGCCG
GGCCCGGGGGTTGGACATGACCAAGCAGGCCCTGCCTGTGGTTCCGGCGG
CTCATTACTTCTGCGGTGGAGTCGTTACTGACTTGGAGGGGCGAACGAGC
CTTCCTGGCCTCTTCGCTGCGGGAGAAGTGGCGTGCACGGGCCTTCATGG
CGCGAACCGACTGGCCTCCACCTCATTGCTGGAGGGTTTGGTGTGGGGGG
TGGCGATCGCCGAGCTCCTGGCGAAGAAGCGTAAAGACGGCCAGGACGCT
CTCTGGAGGAAAGTGGTGAATACCGCCCCTCTGGCTCCGATCCCTCATTC
CCTGGGCGAGTCGAATCAAGCTTTGCCCGTGGCACCTCCTGCACAGGTGG
AGGCTTACATGGCTGAGATTCGTCGCACCCTGTGGGAGGATGTGGGAGTT
GTGCGTCGTCCCGAGGGTCTGGCGTATGCGAGTCGTCACTTGCGCCGGGT
CGAAGCGGAGGTGCAAGCTTTCTATACCTCGACGCGCTTGAGCAAGGACA
CAGTCTCACTGCGCAATGCGGCGGAGACAGCACGGTTGATTGCACGGGCT
GCAGCTCGCAACACCGAGAGCATTGGGACGCATTACGTGGAGACCGatac
ggaggaagaggagcaggagcagatGCTGCATAAAGCCGTGCTTTAG

Coding sequence (CDS) from alignment at CM002462.1:783403..785298+

>rna4071 ID=rna4071|Name=rna4071|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002462.1:783403..785298+ (Nannochloropsis gaditana)
ATGAGTTTTTTGAGCCGCACTTTATCCCGTACAGCGACGCGCACGGCCAC
TCACACCATCCTGGGAGCCCCGGCACGTAccccccgcgcccaccgTCCCC
TCGCTCTGCCACTCAGCTGTTCGACTTcaagagctggaggatgGGCTGGC
TCCCGCGCCCTGCACTTCCAGGCCGCTCAAGCCTCGGACTCGGAGGTTTC
CCGTGTCCTCCGTGAGCAGGAGACGGACGTGCTGATACTCGGGTGCGGCG
TCGCGGGGTGTTCCACCGCGCTCAAGGCCGCCGAGAAAGGGCTGCGTGTC
GTCATGGTCACGTCGGCCACGGATCCGCTGGACTGCAATTCCTTTTGGGC
CCAGGGGGGAATCATTTACAAGGCCTCGGACGACACCCCTGCATTGCTCT
CGGAAGATATCAtggtggcgggggcgggggtaAACGATCGCAAGGCGGTA
TCCAAGCTTGCCATGGACGGGCCGGGatgcgtggaggacgtgcttCTGCG
CCTGGCGCCCGTGCCCTTCGACCGCCACCCCGAcggctccctcgccctct
gcctTGAGGCCTCTCACAACCGAGCACGGATCATCCATTGGCGGGATCAC
ACGGGGAGGGCCATCACGGAAAGTTTGCAGGAAACAGTAGCGGCGCACCC
AAACATCCTCCTGGTGTCAGGTGTGACTGCCGTCGacttggcggtggcgg
agggcgtggaggagcacgaggacgAGCCTCCCCAAAAAggacaggagcag
cagcgtCTGAACCATGACCACGGTCGCCGCTGCCTCGGTGCCCATTTGAT
GCGCGTGGCCCCCGACGCGACCGATCCCGTGCCTGTGCGTGCCGCAGCGA
CCGTCCTGGCGACAGGAGGCCTGGGTGACCTCTACGAGCACACCTCCAAC
CCGGCCTCGGCCCGCGGAGATGGCTTTGCCATGGCCTTGCGCGCCGGTGC
CGCCCTTCAGAACATGGAGTACGTTCAGTTCCACCCCACCACGCTCCATC
TCCCGGGAGAGCGCAGCTTTCTGGTTACGGAGGCTctgcgaggggaaggg
gcccGGCTCCTGAACatgcagggggaggccttCGCACGTCGCTACCACCC
GCAAGGCGAGCTGGCGCCTCGGGACGTGGTTTCTAGGATGATCGTGAGCG
AGATGGCCAGGACAGGAGCAGAACACATGTTCTTAGACATCTCCCACCGA
GACGCGGCCTGGCTACGGGGACGCTTTCCCGCCATCGACGCCCATTGCCG
GGCCCGGGGGTTGGACATGACCAAGCAGGCCCTGCCTGTGGTTCCGGCGG
CTCATTACTTCTGCGGTGGAGTCGTTACTGACTTGGAGGGGCGAACGAGC
CTTCCTGGCCTCTTCGCTGCGGGAGAAGTGGCGTGCACGGGCCTTCATGG
CGCGAACCGACTGGCCTCCACCTCATTGCTGGAGGGTTTGGTGTGGGGGG
TGGCGATCGCCGAGCTCCTGGCGAAGAAGCGTAAAGACGGCCAGGACGCT
CTCTGGAGGAAAGTGGTGAATACCGCCCCTCTGGCTCCGATCCCTCATTC
CCTGGGCGAGTCGAATCAAGCTTTGCCCGTGGCACCTCCTGCACAGGTGG
AGGCTTACATGGCTGAGATTCGTCGCACCCTGTGGGAGGATGTGGGAGTT
GTGCGTCGTCCCGAGGGTCTGGCGTATGCGAGTCGTCACTTGCGCCGGGT
CGAAGCGGAGGTGCAAGCTTTCTATACCTCGACGCGCTTGAGCAAGGACA
CAGTCTCACTGCGCAATGCGGCGGAGACAGCACGGTTGATTGCACGGGCT
GCAGCTCGCAACACCGAGAGCATTGGGACGCATTACGTGGAGACCGatac
ggaggaagaggagcaggagcagatGCTGCATAAAGCCGTGCTTTAG

Synonyms

Publications