rna4053, rna4053 (mRNA) Nannochloropsis gaditana

Overview
Namerna4053
Unique Namerna4053
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length531
Alignment locationCM002462.1:717757..719068 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g60.8184.mrna
Orig protein idgnl|cribi|Naga_100001g60.8184
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:717757..719068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g60gene3899Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26673.1cds4043Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4053rna4053-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4053 ID=rna4053|Name=rna4053|organism=Nannochloropsis gaditana|type=mRNA|length=531bp
ATGGTAATTGATAGCATACAATACGACATAATTAGTTCATGGGAGAGTTA
TGCTTGCTCCTCCTCCACGATCACAGCAGAAGCCAAATCCTCAAGAAATC
GGACAATTGCCCCTACAAGAACGCGAGTCTGTAAAAGTGCTATAAGTATG
AGCCATATGATGAATGTCTTAGCTCACAACAAAACGTTTTGCGTACCTTG
TCTAAACTCTTCTCGAGCATTTCGAGCTTCACAGAGGGGCCTTGAGAGGG
CGATGAGTGCACCGGCAACATTATATCGTCTGCACGACATTCCAATCGCT
TCATCCTGGTCTCTAGGTCTGCGAGACGATTTTCTGAAACTTTCTGATCG
TCCACAGCGACAGAGTCAAAAAGCAAATTGCTGTCGATCAAGACGCGAAA
TTGATCCAGATTGTATTGCATGTGGAGCGACACGGTTTTGTGTCGAAAGT
ACTTCTGTAGACACACAAGAGCACGCGTACCATCAGATGCAGCAGACGAC
GAGATGCTTTGCAGACGTGGGTCGATGTTAA
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protein sequence of rna4053

>rna4053-protein ID=rna4053-protein|Name=rna4053|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MLFSDEKALRMDVAMIVAFILAVNGCALYTLKRVRSQPGSRLFWAAVILC
VPIGGALIFFFFRPRDPIKYFTDDSIPEKKVGQITPVDVPIDKKLPSMTP
PTTPTLLHRFAAHAIKSPDGTLESPCIMYAPSS
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mRNA from alignment at CM002462.1:717757..719068-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4053 ID=rna4053|Name=rna4053|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp|location=Sequence derived from alignment at CM002462.1:717757..719068- (Nannochloropsis gaditana)
CCGGTGAATGCAATTCCTGGACCTTCGCGTTGTCATTCTCGGTTTTTCGC
GCCAAACCTCGAGCATCCTCACGGTGAGGACCTCACCCCACCCTTAACGA
TTCAACGGACATTCAAACATTCAAAAGCTGGCAGCGCCAAAAGGATGCGC
ATGGAGGAGAGGGCTACGAGTGTCACACGTCTCCGCTTACATGGTATGAC
CGGTGCATGATTTCATCCATTTTCTATGCACAATGTACAACGCTCGAGAG
AAAGTCGCCTCCTCATGACGCTTAAAATTGGTTTCAATGGACGTCGTGGA
AGACACTAGAAGAGAACCCACATATTCACTGCATATCTCATTTGTACATG
TTAAATCCCTCACCCTCGAATGAGATCAAAAGCGGATTTTATGTCTTAAA
TATGCAACGGGGTGTTTCAAATATCACCGCAAATGTTTAAGGAGACAAAT
GTGCTGCTGCGATCCACTGCCTGCTTTTCATTTTTAAAACCCACCTAGTA
AAAATCACTCATGCCTTTCGATGAGTGTTGGCTTTTTGGTGAGGGGAAAA
AAATAGAATTACAATTTGACGTCGTGCATTTCCTCCTCAAACAGGGCTAT
AAATCAAGAGAGAATGCTCTTCTCGGATGAGAAAGCGCTTAGGATGGATG
TTGCTATGATAGTAGCCTTTATTTTGGCTGTGAATGGGTGCGCATTATAC
ACTCTAAAACGGGTGAGATCCCAACCTGGGTCGCGACTTTTCTGGGCCGC
AGTCATTCTTTGTGTTCCTATCGGAGGCGCTTTGATATTCTTCTTTTTTC
GGCCACGGGATCCGATCAAATATTTTACCGACGATAGTATACCAGAGAAG
AAGGTGGGCCAAATCACACCCGTGGATGTACCTATAGACAAGAAACTACC
CTCGATGACGCCGCCGACCACTCCCACCCTCCTCCACCGATTCGCAGCGC
ACGCAATCAAGAGCCCGGACGGCACTTTAGAAAGTCCCTGTATAATGTAT
GCACCATCAAGCTGAAGTCCTAACATACTGTCACACTTTACGTCAACTAG
AAAAAGAGTGAGAGATGCGATCAGCGGCGACGTGCTCTTAAGTAGAAATC
CAAGAAGATCTCTCCTTCCCTTTTTTGGGTAATAAGCAAACTTGTTTTTT
GACGATTTGTCGTAGTCGCGCAACACAAATACCTGCCCGCCCGTAAAAGG
CCTCCTGTAAATAAAAAGCTAAAATGGGCCTGGGCCTTCACATAATCGGA
ACCCCTGATAAATCGTTCGGCTGTTTTTAAAGCGGAAAAAAGCATCAAAA
AAAATCGTTCGA
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Coding sequence (CDS) from alignment at CM002462.1:717757..719068-

>rna4053 ID=rna4053|Name=rna4053|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002462.1:717757..719068- (Nannochloropsis gaditana)
ATGCTCTTCTCGGATGAGAAAGCGCTTAGGATGGATGTTGCTATGATAGT
AGCCTTTATTTTGGCTGTGAATGGGTGCGCATTATACACTCTAAAACGGG
TGAGATCCCAACCTGGGTCGCGACTTTTCTGGGCCGCAGTCATTCTTTGT
GTTCCTATCGGAGGCGCTTTGATATTCTTCTTTTTTCGGCCACGGGATCC
GATCAAATATTTTACCGACGATAGTATACCAGAGAAGAAGGTGGGCCAAA
TCACACCCGTGGATGTACCTATAGACAAGAAACTACCCTCGATGACGCCG
CCGACCACTCCCACCCTCCTCCACCGATTCGCAGCGCACGCAATCAAGAG
CCCGGACGGCACTTTAGAAAGTCCCTGTATAATGTATGCACCATCAAGCT
GA
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Synonyms
Publications