rna4051, rna4051 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4051
Unique Name	rna4051
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1041
Alignment location	CM002462.1:712779..715139 +

Link to JBrowse

Properties


Property Name	Value
Product	fha domain protein
Orig transcript id	gnl\|cribi\|Naga_100001g62.8119.mrna
Orig protein id	gnl\|cribi\|Naga_100001g62.8119
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:712779..715139 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g62	gene3897	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4051	rna4051-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26608.1	cds4041	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:712779..715139+
coding sequence from alignment at CM002462.1:712779..715139+

mRNA sequence

>rna4051 ID=rna4051|Name=rna4051|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp
CAAGACACCACCACTGTCACACAGAGAATCCGCGCTATGCTTTCCCCCCC
TCGGTCCATGTTTTGCTCAATATCCCGAGACAGCTCGAAGCCTGTGACCT
TCGAATCAGCGTGAGAGGGCGCTTGCCCCGCGATCACAGGCATGCGTGAC
CTCCCTGCACACTCCCGGGGCCTCCGCGCCGATGGTCAAGCAGACGCCGC
GTCACGGACACGCAGGACAAGCTCTCGGCCGGCTTAAGTGTACTGAATGG
ATCTTGTCGGATTTTGACATAGATCCTTGGGCAGTTTTCAGGCCATTAGT
ACTCGAATTTTTCAAGAAGAATCCTGGTGTAGCTTCGGAACACGGTCTCG
GAACGTGCAATGTTCTGCTTCCGGTGGGGTCATGACACGCATAGGGTAAA
AATGCCATCGAAAGCCAATATCTGGGGCCACCCCATCCACCCTATGTTAG
TAGCCTTCCCCATTGTCCTTTTTATTATGACTCTCATCGCCGACGTCGTA
TACGAGGCCGGTTGGGCGGGCTCGGATTGGTCCCAATTTGCGTATATTCT
GCTCGTCGGCGGCGTTGCCGCAGCCGTAGCAGCAGCTATAACAGGCTTGG
TTGAATATTCCATTATCATAGGCGAGGAAGTAAAGCAGACTGCCACCGCC
CACATGCTTCTTAATGCTGGAGTTGTCATGTTACAAGTAATAAATCTTAG
CTACCGTGGTCGCGCGAAAGGGAATCATTACTGGAGAAATGGCTGGATTT
TTAGCCTTGTTAGCGTCCTCCTCCTCGCAATTTCTGGATGGCTTGGCCAA
GACCTTGTCTACAAGCATGGGATGGGGTTTGTATGGACCGGCGTTCCTAT
AGCTGCGGAGCGTCAACGGCTCGTGCCAGCATGAAAGTGAAAGAGGAGAA
ACAACTGAGCAAATGTAACGTACATTTTCAAAATGCGTGAGAGGCTTGTA
AATAGACATGCCCACGGTTGGCAATTACAGAAAAATACACCGCGAAACAC
AGTACTCATGAGACGTCCTCAACGAGTGGCATAATTTTTGG

protein sequence of rna4051

>rna4051-protein ID=rna4051-protein|Name=rna4051|organism=Nannochloropsis gaditana|type=polypeptide|length=786bp
MGQVPSASAVVNVGQPNRTEEEWPQTFDENKTHVFSDAGVSGISRMLHPG
ATRLSLGNSGVAGTGSNWWVDAMVSTPLFPHGRSPASVGERQARHQKRVS
KFRVFADGVVFEGPEAMAIGDTHDLSKGYECVMGRPVTRVTVGDKRAQQV
LVAFADNKFWAVPSRQGFSRHLGVSLVLGDKTARGPKHTLRVGDILRLGS
VGLLVSEMRTEADGGKSRTVSQEVLEQIREDVQTAPRQVLAPLRKDFFMG
NSVHEEERTEEVGRRVVMVEEEEEDEEEEGGVDNDTGTEHSVSSSGSAGH
QSRSLKGGLAGPEADSGEGGNGRYQCYICMDSEEEDGDVLIAPCQCKGST
ALVHVKCLQRLLSTGDAAKRTSVTSTKHQNYTCKICKARYKTHVCLPDGS
LLPLLNPTLMPPYLTLVVITRHESHPDLFNTIFQLSFARAAELSMGRSQG
CDVVIGYRTVSTRHATISYSKGEFYYQDARSSNGSLLYLRGPLEIPTSRS
IRLRMGRSVLSLRGRHALQLSSLPRRAAADAWRWLSATMGGSGNGGGAGE
GEGQGVEGRRGRRNGAEEGTERRGNEARDLEGRLGLELLRDLHMGRFQAA
RARDSSLLSEEREAGLGEAERVVWRWGSSAGMGDGSEGTIGSRSGTSSMN
RMVDSRSGGGGGGGSLLRSSLQQVDPPLEDQRQSPAVGGPEGLWRDSTED
FMNPGHTLTRERGEEIESPAARPAGGGARESTIPQRAAAIGAESGQDLEL
SFSLPPCQPRLRQTDLISAPSRRVVLERTHSSRVES

mRNA from alignment at CM002462.1:712779..715139+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4051 ID=rna4051|Name=rna4051|organism=Nannochloropsis gaditana|type=mRNA|length=2361bp|location=Sequence derived from alignment at CM002462.1:712779..715139+ (Nannochloropsis gaditana)
ATGGGGCAAGTTCCATCAGCGTCCGCTGTGGTAAATGTTGGTCAGCCTAA
CAGGACGGAAGAAGAGTGGCCACAGACTTTCGATGAAAACAAGACGCACG
TCTTCTCGGATGCGGGCGTTTCCGGGATTTCCCGCATGCTCCACCCTGGC
GCCACCCGTTTAAGTCTGGGGAACAGTGGCGTCGCAGGCACCGGGTCGAA
TTGGTGGGTGGATGCCATGGTCTCgacgcccctcttcccgcatgGTCGTA
GCCCCGCCAGcgtgggagagaggcaggCCCGTCACCAGAAACGCGTGAGC
AAATTCCGCGTATTCGCGGATGGAGTTGTCTTTGAAGGGCCGGAGGCTAT
GGCCATTGGGGACACGCACGATCTGTCCAAGGGCTACGAGTGCGTGATGG
GGCGGCCTGTGACGCGGGTGACGGTCGGGGACAAACGCGCTCAGCAAGTC
TTGGTCGCCTTCGCCGACAACAAATTCTGGGCCGTGCCCTCCCGGCAGGG
CTTCTCGCGGCATCTCGGCGTCTCCCTTGTACTGGGGGACAAGACTGCCC
GCGGGCCCAAGCATACGCTGCGGGTGGGGGACATTCTGCGTCTGGGCTCT
GTGGGTCTCCTCGTCTCAGAAATGCGAACCGAGGCAGACGGGGGCAAAAG
CCGCACGGTTTCCCAGGAGGTATTGGAGCAGATTAGGGAGGATGTTCAGA
CGGCGCCGCGCCAGGTCTTGGCACCTTTACGGAAGGACTTTTTTATGGGA
AACAGCGTccacgaggaagagaggacggaagaggtagggaggagagtggt
gatggtggaggaggaggaggaggacgaggaggaggaggggggggtggaca
ATGACACGGGGACTGAGCACAGCGTGAGTTCGTCGGGAAGCGCGGGCCAC
CAGTCCCGGAGCCTAAAGGGGGGACTGGCTGGCCCAGAGGCAGATTccgg
cgagggcgggaacggCAGGTATCAGTGCTACATTTGCATggactcggagg
aggaggacggggatgtATTGATCGCTCCCTGTCAGTGCAAGGGCTCGACT
GCTTTGGTGCACGTTAAGTGCTTGCAGCGCCTTTTGAGCACGGGGGACGC
GGCCAAGCGGACAAGCGTCACTTCTACCAAGCACCAGAACTACACCTGTA
AGATTTGCAAGGCGCGCTACAAGACGCACGTCTGCCTGCCCGACGGAAGC
CTTCTGCCTTTGCTCAACCCGACACTGATGCCCCCCTACCTGACCTTGGT
TGTGATCACACGGCATGAGTCGCACCCTGACCTGTTCAACACAATTTTCC
AGCTCTCCTTTGCCCGGGCCGCCGAGCTCAGCATGGGTCGTTCTCAGGGT
TGCGACGTGGTAATTGGCTACCGGACTGTGTCCACCAGGCACGCCACCAT
CTCGTACTCAAAGGGAGAATTCTACTACCAGGACGCCCGCTCCTCGAACG
GCTCTCTGCTTTACCTGCGGGGGCCGTTAGAGATCCCGACGTCTCGGTCC
ATCCGCTTGCGCATGGGCCGATCCGTGCTCTCCCTGCGAGGGCGACACGC
GCTGcagctttcttccttgccccgACGGGCCGCCGCGGACGCCTGGCGCT
GGCTTTCTGCCACTATGGGGGGCAGTGGTAATGGGGGGGGAGctggtgag
ggagagggtcaaggcgtggaagggcggcggggccggaggaacGGCGctga
ggaggggacggagagaagagggaatgaAGCTCGAGACCTGGAGGGCAGAT
TGGGTTTGGAGCTGCTCCGGGATTTGCACATGGGCCGCTTTCAAGCGGCG
AGGGCCAGGGATAGCAGCCTCTTGtcggaggaacgggaggcaggtctggg
ggaggcggagcgtGTCGTCTGGCGGTGGGGCTCTTcggcggggatggggg
acGGAAGCGAGGGGACCATCGGGAGCCGCTCAGGAACCAGCTCTATGAAT
AGAATGGTAGACAGTCGcagtggtggcggggggggtggagggagtcTGCT
GCGTTCTAGTCTACAGCAGGTTGATCCACCGCTAGAGGACCAACGGCAGT
CGCCAGCCGTTGGAGGCCCCGAGGGCCTGTGGAGGGATAGCACTGAAGAT
TTCATGAATCCTGGACATACGCTTacgagagaaaggggggaggagataga
gTCACCCGCAGCACGTccggcaggtggaggagcacgagAAAGTACAATAC
CACAGAGAGCAGCAGCCATTGGAGCCGAGAGTGGGCAAGACCTTGAGCTG
TCGTTCTCTTTGCCCCCATGTCAACCTCGCCTTCGTCAGACAGACTTGAT
ATCCGCACCATCGAGGCGAGTGGTTCTCGAAAGAACGCATAGCAGTCGGG
TTGAGAGCTGA

Coding sequence (CDS) from alignment at CM002462.1:712779..715139+

>rna4051 ID=rna4051|Name=rna4051|organism=Nannochloropsis gaditana|type=CDS|length=2361bp|location=Sequence derived from alignment at CM002462.1:712779..715139+ (Nannochloropsis gaditana)
ATGGGGCAAGTTCCATCAGCGTCCGCTGTGGTAAATGTTGGTCAGCCTAA
CAGGACGGAAGAAGAGTGGCCACAGACTTTCGATGAAAACAAGACGCACG
TCTTCTCGGATGCGGGCGTTTCCGGGATTTCCCGCATGCTCCACCCTGGC
GCCACCCGTTTAAGTCTGGGGAACAGTGGCGTCGCAGGCACCGGGTCGAA
TTGGTGGGTGGATGCCATGGTCTCgacgcccctcttcccgcatgGTCGTA
GCCCCGCCAGcgtgggagagaggcaggCCCGTCACCAGAAACGCGTGAGC
AAATTCCGCGTATTCGCGGATGGAGTTGTCTTTGAAGGGCCGGAGGCTAT
GGCCATTGGGGACACGCACGATCTGTCCAAGGGCTACGAGTGCGTGATGG
GGCGGCCTGTGACGCGGGTGACGGTCGGGGACAAACGCGCTCAGCAAGTC
TTGGTCGCCTTCGCCGACAACAAATTCTGGGCCGTGCCCTCCCGGCAGGG
CTTCTCGCGGCATCTCGGCGTCTCCCTTGTACTGGGGGACAAGACTGCCC
GCGGGCCCAAGCATACGCTGCGGGTGGGGGACATTCTGCGTCTGGGCTCT
GTGGGTCTCCTCGTCTCAGAAATGCGAACCGAGGCAGACGGGGGCAAAAG
CCGCACGGTTTCCCAGGAGGTATTGGAGCAGATTAGGGAGGATGTTCAGA
CGGCGCCGCGCCAGGTCTTGGCACCTTTACGGAAGGACTTTTTTATGGGA
AACAGCGTccacgaggaagagaggacggaagaggtagggaggagagtggt
gatggtggaggaggaggaggaggacgaggaggaggaggggggggtggaca
ATGACACGGGGACTGAGCACAGCGTGAGTTCGTCGGGAAGCGCGGGCCAC
CAGTCCCGGAGCCTAAAGGGGGGACTGGCTGGCCCAGAGGCAGATTccgg
cgagggcgggaacggCAGGTATCAGTGCTACATTTGCATggactcggagg
aggaggacggggatgtATTGATCGCTCCCTGTCAGTGCAAGGGCTCGACT
GCTTTGGTGCACGTTAAGTGCTTGCAGCGCCTTTTGAGCACGGGGGACGC
GGCCAAGCGGACAAGCGTCACTTCTACCAAGCACCAGAACTACACCTGTA
AGATTTGCAAGGCGCGCTACAAGACGCACGTCTGCCTGCCCGACGGAAGC
CTTCTGCCTTTGCTCAACCCGACACTGATGCCCCCCTACCTGACCTTGGT
TGTGATCACACGGCATGAGTCGCACCCTGACCTGTTCAACACAATTTTCC
AGCTCTCCTTTGCCCGGGCCGCCGAGCTCAGCATGGGTCGTTCTCAGGGT
TGCGACGTGGTAATTGGCTACCGGACTGTGTCCACCAGGCACGCCACCAT
CTCGTACTCAAAGGGAGAATTCTACTACCAGGACGCCCGCTCCTCGAACG
GCTCTCTGCTTTACCTGCGGGGGCCGTTAGAGATCCCGACGTCTCGGTCC
ATCCGCTTGCGCATGGGCCGATCCGTGCTCTCCCTGCGAGGGCGACACGC
GCTGcagctttcttccttgccccgACGGGCCGCCGCGGACGCCTGGCGCT
GGCTTTCTGCCACTATGGGGGGCAGTGGTAATGGGGGGGGAGctggtgag
ggagagggtcaaggcgtggaagggcggcggggccggaggaacGGCGctga
ggaggggacggagagaagagggaatgaAGCTCGAGACCTGGAGGGCAGAT
TGGGTTTGGAGCTGCTCCGGGATTTGCACATGGGCCGCTTTCAAGCGGCG
AGGGCCAGGGATAGCAGCCTCTTGtcggaggaacgggaggcaggtctggg
ggaggcggagcgtGTCGTCTGGCGGTGGGGCTCTTcggcggggatggggg
acGGAAGCGAGGGGACCATCGGGAGCCGCTCAGGAACCAGCTCTATGAAT
AGAATGGTAGACAGTCGcagtggtggcggggggggtggagggagtcTGCT
GCGTTCTAGTCTACAGCAGGTTGATCCACCGCTAGAGGACCAACGGCAGT
CGCCAGCCGTTGGAGGCCCCGAGGGCCTGTGGAGGGATAGCACTGAAGAT
TTCATGAATCCTGGACATACGCTTacgagagaaaggggggaggagataga
gTCACCCGCAGCACGTccggcaggtggaggagcacgagAAAGTACAATAC
CACAGAGAGCAGCAGCCATTGGAGCCGAGAGTGGGCAAGACCTTGAGCTG
TCGTTCTCTTTGCCCCCATGTCAACCTCGCCTTCGTCAGACAGACTTGAT
ATCCGCACCATCGAGGCGAGTGGTTCTCGAAAGAACGCATAGCAGTCGGG
TTGAGAGCTGA

Synonyms

Publications