rna405, rna405 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna405
Unique Name	rna405
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1824
Alignment location	CM002455.1:1002993..1005413 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100003g80.1757.mrna
Orig protein id	gnl\|cribi\|Naga_100003g80.1757
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1002993..1005413 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g80	gene389	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna405	rna405-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30240.1	cds405	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1002993..1005413+
coding sequence from alignment at CM002455.1:1002993..1005413+

mRNA sequence

>rna405 ID=rna405|Name=rna405|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp
GAGTTACATATTTCGAATTGTGGGTCGCCGTTGCGAAGGCTGGTCGAGCA
CGCCTAACTTGTGTTGTCCTCCATCACGCCCTCAAAACCATCTACAGACT
CACCAATGAGTGCAGGATGCTCGGTCACATCTTTAGAAAAGGCGGATACG
TTATCAGGAGCGCACCGTCAATTGATGTTGACATGCAACCGTGGTCGTGA
CAGGGCTCGCGTCTCCGAGCCGTGCACTTTTGATTTTGATTCTGTCATCG
ATTCAAGTGCACGCCCTCGGAAAGGACAAGAAATCTCATCTTGCAAGGCT
CCAAAATCCGAACACTGCGTAACTCAGACAACTCATCGGTCTGACAAGTT
CATCGGTTACCGAGCACACTGTCCACAACTTGAAGAATGGTCTAATGTGG
AAGCGGCTTTAAGCAAGTCCCCGTTTCTAACGGTTTATCCAGTCAGTCAA
GTTCTCCTGGAGAGACACCTGCGAGATGCCAGACCTATTCCTCGTGGTCT
GAAACGCTTTCAAAGCATACTAAGGGCGAATTTCGGGCGACGAATAGATG
GGATCGATTTATCTTTTTTACGAGAACAAGATCGAGCATTCGTAGACCTG
CAAGCTGAACTTTCTGGACGTCCCCGAAGCAGTAGTATCCCCCGGACAAG
TGGTGTTACGGCAGCCGGTCGGGTTGCGTCGGCAGCGAAGGGCAAGCCTC
TCAACACCAAAGATGATCTGGCACATAGCAAGATGAGATCTCCCACAAGA
GAAAACTTGCCTTCGGAGACAACAACCACAAATATGAAAAGGAAAAGGCC
GCTTTCGTCGTTCCTCAGACCTACGACCCCTACGGCTGACAATGGGAGGT
CCGCGACTCCCACGATGGCCGTCAGTAGCGCGAGCTCCGTGGGAAAATGG
AGCACTGACGAGGGGCAGACATTGTATAAAAGAGGCAAAAATACCGACTT
TCGAGACATACATGACGGGGATGTCGGAAAATCGCTGCAGTCAACGCAGC
AATCGTCCCGCTACAATTGTCACGTTCACAAGAAGGAAATAGTTACAAGG
GCATCAATTCAGCAAATCACAGAGTCGAATTGTTTAAGCGTAGAAGAAAA
ACACACTTTGGCACGAAATCCAAGTCACCGGCCAAAGGTGGAAGTGACGG
AAACGGGTGACATTCGTCTGAATGGGGAGACGCTCCAGCCAGGAGAGCCC
CGCTATGTGCGGATGTTCGGGATAGCCTACTGTGAAAAGGCTCGAGATCC
GGCATGGACTATTGGCATCGGAATGGTAGATCGATGCTATTATCGAGGGC
ACAAGAAAGAGGCGAAGTCCCGACCGGGAGATTATTTCCCAACTGATCAT
GCGATGCTCGTGGATTTCATTCACCGTCAACCGCAGGTCTTCGTCGAAGA
ATGTAGAAAGGCTTAGTCGAGAGCTTGGTTTAGAGCAGTGTAACCTAATG
TTAGGTCTCTTAACGTGCAATTTCTCTTTCGCATTTAAGGGGTAGCCACA
GAGTTACAGTGTCGCAAAAATAAAGACCCCAAAGCGTGGTATCCGTCCGT
AAATTCTCGGCGCGAAATGCCTCCACACAATAAAATAAGAAGGGAAGAAT
ATATTGCGACAAATCTTCCCTGCGCTTCTTCTCACTTACTCCCTGGACAA
AATTTCAAGATCATGATATCGACAACGAAGGATGTTTACTTTCTTGGTTC
ATGATTTTTGCGGTATGTCCCTCACGTTAAGCCAGCATAAGTGTGAAAGC
GCGCTCCTTTCGGTTTATCAATTTCTGTGGTTGCTAAATGGAATGTAGAG
GGGGGGATATGCGATAAACAATTA

protein sequence of rna405

>rna405-protein ID=rna405-protein|Name=rna405|organism=Nannochloropsis gaditana|type=polypeptide|length=806bp
MELGNVSKTKTHHIVKVYSMATHPASQATPDLDDFMNPDASFLQEIRGLG
REAAEDFVAFEIYVTKQGDSTGEQDDRDKLARYALSRILEVTEEYREAYF
WHHETFMLSPVPSFSEVDSAMTPAPGRAPEAGFPLLRGCVHVGDNIEDEW
FTVWLLRRATGDPALAALGLAARVWDADGDFLLIEAALAAPGWLDPDNSA
FRVWIKGGEFHFLSIDHHPLSSARPLAAADALRLLSAPSPLPPSETPVSL
AHPPTASSWLNTALNGRMAAYPAGIGSAKHRSACYLPVGAAVLLQRHPAL
LAAAVRTLRSREPGELLRLMRSERNNGGGGREGGGKGDGGTVGGRCQGEI
RFDVSRLVPVQLTMTRLLFGQLESDSLQPPKAFMSAIVDVGGRERERAVA
SGKGREEGGERERRVDAAILRGVRLACGLEMLYWRLQRDRKEGRGGEEGK
AWTAYQARLRRQGFWGLEEEGSAEYRVRTKQAWNAFIGWRRKQGLEAWRD
EGLERNAWMRELLEEEDGGWEAGAFSPVLDDLPMDDDEGWMQTEPGDLER
LLEHYAETLEGQEQSFLDEEDEEDEEEDEEEDEEGGGPGVEGLTSVLEGM
KDFVAGSAGLEGAEVRKRRGSGGRHDARGSEGGGVRLGVSRLLSILEGGD
AEGGLRMAARVTEVERAEEEEEGDNDLLGDRGMAFMHEARKNEENDSDDG
SEGNAFDEETGMDEETSQDREMEMYLAQMDKELVGTTLADTFERAPAGRR
PEAPNGLEGAQELNNAEDLQPVDVDLNLVRHLLESVAAQGALPGPASNLL
RELWET

mRNA from alignment at CM002455.1:1002993..1005413+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna405 ID=rna405|Name=rna405|organism=Nannochloropsis gaditana|type=mRNA|length=2421bp|location=Sequence derived from alignment at CM002455.1:1002993..1005413+ (Nannochloropsis gaditana)
ATGGAACTGGGCAACGTATCTAAGACCAAAACCCATCACATTGTGAAGGT
TTACAGCATGGCAACACATCCTGCATCGCAAGCAACTCCAGACCTGGACG
ACTTCATGAACCCCGACGCATCTTTTTTGCAAGAAATCAGGGGTTTAGGA
CGAGAGGCAGCAGAAGACTTCGTGGCTTTTGAGATATACGTGACAAAACA
AGGGGACTCCACTGGAGAGCAAGATGATCGCGATAAGTTGGCAAGATATG
CACTCTCTAGGATCTTGGAAGTCACTGAGGAGTACCGAGAGGCTTACTTC
TGGCATCACGAGACCTTTATGCTCTCACCAGTGCCCTCGTTCAGTGAAGT
CGACTCCGCCATGACGCCAGCGCCTGGTCGCGCACCGGAGGCAGGTTTTC
CCTTATTGCGTGGATGCGTGCATGTGGGCGACAACATCGAAGACGAGTGG
TTTACTGTCTGGTTGCTACGACGTGCCACTGGAGACCCAGCACTTGCGGC
CCTCGGCTTGGCAGCACGGGTGTGGGACGCAGATGGCGATTTTCTGTTGA
TCGAAGCCGCCCTTGCAGCGCCTGGGTGGCTCGATCCCGACAACAGCGCT
TTTCGCGTGTGGATCAAAGGTGGAGAATTTCACTTCCTCTCGATAGATCA
CCATCCTTTGTCTTCTGCCCGCCCCCTGGCAGCAGCTGACGCCTTGCGGC
TCCTAAgtgccccctcgcccctcccaccctccgaGACCCCTGTCTCTTTG
GCACACCCTCCCACTGCATCATCTTGGCTCAACACGGCTCTGAATGGGCG
AATGGCCGCATACCCAGCCGGGATAGGAAGCGCGAAGCACCGATCGGCGT
GTTATCTGCCCGTGGGCGCGGCAGTTTTGCTTCAGAGACATCCTGCCCTG
CTGGCGGCCGCTGTGAGGACCCTGCGGTCTCGGGAGCCGGGGGAATTGCT
GCGCTTGATGAGAAGCGAAAGAAAtaatggaggtggcgggagggagggag
gagggaagggggacggtggcacggtgggagggcggtgtCAAGGAGAGATA
CGCTTTGACGTGTCTCGCTTGGTCCCAGTGCAACTGACAATGACGCGCCT
CCTGTTTGGGCAGCTTGAGTCGGACTCGCTACAGCCGCCCAAAGCCTTCA
TGTCTGCCATCGTCgacgtgggggggagggagcgggagcgggcggtggcc
tcgggaaaagggagggaggaaggcggggagcgggagcgaaGGGTGGATGC
GGCGATTTTGCGCGGCGTACGTCTGGCTTGCGGGTTGGAAATGCTGTACT
GGCGGCTCCAGAgggacaggaaagaggggcgggggggagaggagggcaaa
gcTTGGACGGCTTACCAGGCCCGGTTGCGGAGACAGGGGTTttgggggct
ggaggaggagggctcggCGGAGTATCGGGTGCGAACGAAGCAAGCATGGA
ATGCGTTCATTGGATGGAGGCGAAAGCAAGGCTTGGAGGCTTGGAGGGAT
GAAGGCTTAGAGCGTAACGCATGGATGCGTGagttgctggaggaggaaga
tggggggtgggaggcgggcgccttCTCGCCAGTCCTGGACGATCTCCCTA
TGGATGACGACGAAGGATGGATGCAAACGGAACCCGGAGATCTGGAGCGG
CTGCTGGAGCACTATGCAGAGActctggaggggcaggagcaaTCTTTCtt
agatgaggaggacgaggaggacgaggaggaggacgaggaggaggacgagg
aggggggagggcctggtgtGGAGGGTCTGACATCTGTATTGGAAGGAATG
AAGGACTTTGTCGCGGGTTCGGCGGGGTTGGAGGGTGCTGAGGTAAGGAA
AAGACGGGGCAGCGGAGGGCGCCACGACGCACGCGGCagcgaaggtggag
gcgtgCGCCTGGGCGTGAGTCGATTGCTGAGCATTCTTGAAGGAGGCGAT
GCAGAGGGCGGATTGAGGATGGCGGCTAGAGTGACAGAAGTTGAGagagc
ggaagaggaggaggagggggacaatgATTTGCTTGGTGATAGAGGCATGG
CGTTCATGCACGAAGCTAGAAAGAATGAGGAAAATGACAGCGATGATGGG
AGTGAGGGCAACGCCTTCGACGAAGAGACCGGGATGGATGAGGAGACTTC
ACAAGACCGAGAGATGGAGATGTATTTGGCGCAGATGGACAAAGAGCTCG
TCGGCACAACCTTAGCTGACACGTTTGAGCGTGCACCcgctgggaggagg
cctgaGGCTCCCAACGGTCTCGAAGGAGCGCAGGAACTCAATAATGCGGA
AGACCTACAACCAGTGGACGTGGACTTGAACTTGGTCCGTCATTTGCTGG
AGTCGGTGGCCGCACAAGGCGCTCTTCCAGGGCCCGCCTCGAATCTCCTG
AGGGAGCTGTGGGAAACCTGA

Coding sequence (CDS) from alignment at CM002455.1:1002993..1005413+

>rna405 ID=rna405|Name=rna405|organism=Nannochloropsis gaditana|type=CDS|length=2421bp|location=Sequence derived from alignment at CM002455.1:1002993..1005413+ (Nannochloropsis gaditana)
ATGGAACTGGGCAACGTATCTAAGACCAAAACCCATCACATTGTGAAGGT
TTACAGCATGGCAACACATCCTGCATCGCAAGCAACTCCAGACCTGGACG
ACTTCATGAACCCCGACGCATCTTTTTTGCAAGAAATCAGGGGTTTAGGA
CGAGAGGCAGCAGAAGACTTCGTGGCTTTTGAGATATACGTGACAAAACA
AGGGGACTCCACTGGAGAGCAAGATGATCGCGATAAGTTGGCAAGATATG
CACTCTCTAGGATCTTGGAAGTCACTGAGGAGTACCGAGAGGCTTACTTC
TGGCATCACGAGACCTTTATGCTCTCACCAGTGCCCTCGTTCAGTGAAGT
CGACTCCGCCATGACGCCAGCGCCTGGTCGCGCACCGGAGGCAGGTTTTC
CCTTATTGCGTGGATGCGTGCATGTGGGCGACAACATCGAAGACGAGTGG
TTTACTGTCTGGTTGCTACGACGTGCCACTGGAGACCCAGCACTTGCGGC
CCTCGGCTTGGCAGCACGGGTGTGGGACGCAGATGGCGATTTTCTGTTGA
TCGAAGCCGCCCTTGCAGCGCCTGGGTGGCTCGATCCCGACAACAGCGCT
TTTCGCGTGTGGATCAAAGGTGGAGAATTTCACTTCCTCTCGATAGATCA
CCATCCTTTGTCTTCTGCCCGCCCCCTGGCAGCAGCTGACGCCTTGCGGC
TCCTAAgtgccccctcgcccctcccaccctccgaGACCCCTGTCTCTTTG
GCACACCCTCCCACTGCATCATCTTGGCTCAACACGGCTCTGAATGGGCG
AATGGCCGCATACCCAGCCGGGATAGGAAGCGCGAAGCACCGATCGGCGT
GTTATCTGCCCGTGGGCGCGGCAGTTTTGCTTCAGAGACATCCTGCCCTG
CTGGCGGCCGCTGTGAGGACCCTGCGGTCTCGGGAGCCGGGGGAATTGCT
GCGCTTGATGAGAAGCGAAAGAAAtaatggaggtggcgggagggagggag
gagggaagggggacggtggcacggtgggagggcggtgtCAAGGAGAGATA
CGCTTTGACGTGTCTCGCTTGGTCCCAGTGCAACTGACAATGACGCGCCT
CCTGTTTGGGCAGCTTGAGTCGGACTCGCTACAGCCGCCCAAAGCCTTCA
TGTCTGCCATCGTCgacgtgggggggagggagcgggagcgggcggtggcc
tcgggaaaagggagggaggaaggcggggagcgggagcgaaGGGTGGATGC
GGCGATTTTGCGCGGCGTACGTCTGGCTTGCGGGTTGGAAATGCTGTACT
GGCGGCTCCAGAgggacaggaaagaggggcgggggggagaggagggcaaa
gcTTGGACGGCTTACCAGGCCCGGTTGCGGAGACAGGGGTTttgggggct
ggaggaggagggctcggCGGAGTATCGGGTGCGAACGAAGCAAGCATGGA
ATGCGTTCATTGGATGGAGGCGAAAGCAAGGCTTGGAGGCTTGGAGGGAT
GAAGGCTTAGAGCGTAACGCATGGATGCGTGagttgctggaggaggaaga
tggggggtgggaggcgggcgccttCTCGCCAGTCCTGGACGATCTCCCTA
TGGATGACGACGAAGGATGGATGCAAACGGAACCCGGAGATCTGGAGCGG
CTGCTGGAGCACTATGCAGAGActctggaggggcaggagcaaTCTTTCtt
agatgaggaggacgaggaggacgaggaggaggacgaggaggaggacgagg
aggggggagggcctggtgtGGAGGGTCTGACATCTGTATTGGAAGGAATG
AAGGACTTTGTCGCGGGTTCGGCGGGGTTGGAGGGTGCTGAGGTAAGGAA
AAGACGGGGCAGCGGAGGGCGCCACGACGCACGCGGCagcgaaggtggag
gcgtgCGCCTGGGCGTGAGTCGATTGCTGAGCATTCTTGAAGGAGGCGAT
GCAGAGGGCGGATTGAGGATGGCGGCTAGAGTGACAGAAGTTGAGagagc
ggaagaggaggaggagggggacaatgATTTGCTTGGTGATAGAGGCATGG
CGTTCATGCACGAAGCTAGAAAGAATGAGGAAAATGACAGCGATGATGGG
AGTGAGGGCAACGCCTTCGACGAAGAGACCGGGATGGATGAGGAGACTTC
ACAAGACCGAGAGATGGAGATGTATTTGGCGCAGATGGACAAAGAGCTCG
TCGGCACAACCTTAGCTGACACGTTTGAGCGTGCACCcgctgggaggagg
cctgaGGCTCCCAACGGTCTCGAAGGAGCGCAGGAACTCAATAATGCGGA
AGACCTACAACCAGTGGACGTGGACTTGAACTTGGTCCGTCATTTGCTGG
AGTCGGTGGCCGCACAAGGCGCTCTTCCAGGGCCCGCCTCGAATCTCCTG
AGGGAGCTGTGGGAAACCTGA

Synonyms

Publications