rna4040, rna4040 (mRNA) Nannochloropsis gaditana

Overview
Namerna4040
Unique Namerna4040
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length495
Alignment locationCM002462.1:684575..686449 +

Link to JBrowse

Properties
Property NameValue
Productarginine-trna-protein transferase 1-like protein
Orig transcript idgnl|cribi|Naga_100001g75.8129.mrna
Orig protein idgnl|cribi|Naga_100001g75.8129
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:684575..686449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g75gene3886Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4040rna4040-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26618.1cds4030Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4040 ID=rna4040|Name=rna4040|organism=Nannochloropsis gaditana|type=mRNA|length=495bp
ATGCATTTCATAGAGGGTAGGGCGCTCCCCCCCCAGGTGGAGCCGAAAGA
GGGATGCTTTTTGCCCTTTCCACTACGGAACGGTCCCATGGAAGCACGAG
TTGCTTCATGCCTTGCGCATGACACAATACATTTGCATGGTGGAACGTGT
CGCCCCTCGGTATTGCTGTGTGTGTCGTCTAAGATTGGATGGGTTTCAGC
AACAGAATTCCTTTTTGGCATCTTGGCTGTAGTGCGCATTCCTGTACCGC
AAATTCGGGCTTCATACTCCTTCCCCTTTCCCATTAGTTTCTTAAAGCTC
CATCAAAGCGGGCAACCTAATATTCGCGCGGCCAAGCTTTCGTTGTTTCT
TCGCCCTTTAAATTCTGAGCCTTCCTTACCCATCAGCATTAAGTGCTGTG
CGAGGAGGGACGCCACCTTGACTGGCTTTTCGTGCGTAAGTGATAGAAAT
TATCCCAGAGTGAGCACTTCTTGCCTGTCCCCTACAGGCACGTGA
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protein sequence of rna4040

>rna4040-protein ID=rna4040-protein|Name=rna4040|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MPTSSPCVLASLFIVLLLLYPPSGCVCFRLGKRENDVASINSDGASTAPA
QVQQWKVPRLSKVVAEAMGHGGDSATSVECHTADKLMQERGPDNYRKAAA
EYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKL
WKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGD
GLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFES
AWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDV
AEFFRRESRRSLEMTKERIDGGMA
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mRNA from alignment at CM002462.1:684575..686449+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4040 ID=rna4040|Name=rna4040|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002462.1:684575..686449+ (Nannochloropsis gaditana)
ACAGGGAGGCCTGTTCGCTATCTCTCGTGGCCGGTCTGACCTAACTCGTC
ATgcctacctcctcgccctgcgTACTCGCGTCCCTTTTTATCGTGTTATT
GCTTCTTTACCCGCCCTCAGGCTGCGTCTGTTTCCGCTTGGGGAAGCGTG
AAAACGATGTTGCCTCTATCAACAGCGATGGGGCCTCAACTGCGCCAGCG
CAGGTTCAGCAGTGGAAGGTCCCGCGATTGAGTAAAGTAGTTGCTGAGGC
GATGGGGCACGGTGGCGACAGTGCAACGAGTGTGGAGTGCCATACCGCGG
ATAAACTAATGCAAGAACGAGGGCCTGACAACTATAGGAAGGCTGCTGCC
GAGTATAAACTTCTTTTGGAGAAGCAACCCAACAGGTAAAAGAGAAGTTG
TGCGGCTCGAGGGCTTGGGCCCTCTTCAAGCTTTGTTGCACGACATGAGA
ATCTAACACCCCTGCACTAATGCGTCTTTTCGAATGCTATACCTAATCTA
ACGtaccatttttttcctttgaaTCGGGACCCTCACCACGATAAGCGCGT
CTCTCAAGTTCAAATTCGCCGACGCCAGCGTCTCATTGCTCCGCTCATTG
ACGAATGCCAACGCGGTCCTCATTGACGGCGTCTCCGACAGCAAAGAGAA
CCGGAAGCTGTGGAAGACCTATGCATTTGAGGCTTATGACATTTTAAAAG
AATTGCACGCGCAAGAGCCTCAAAACGCGCGAATACACGTCCTCATGACC
GAGGCCTACACTTACAGGACGTCCAGCAAGGGCATCCTAAAGGCGGCCGT
GACGGGCGATGGCCTCACCTTCATGCGCCTCGTCGACCAGATTGTCTCCC
GCCACCCAACTTACGACGCAGGTGTGCCCTTCATTTTTCGAGGGGCTTTC
CTTCTGGCCGCGCCCTGGCCCCTGCGGGACGTGccgaaggcggtggaggc
ctttGAGAGCGCCTGGGAGGTGGAGCCTCGGTCCTTGCGCAACAACTTCT
TTCTCGGGGTCAGCCACTTCCATGCAGGATCATTCGAGGCAGCCAGACAG
GCCTTCGAACGGGCCGTGGGGAAGGATGTGGAATCGGTGGCCGCGACTGA
GGTGGACGTGGCCGAGTTTTTCCGGCGGGAGTCCCGACGGTCCTTGGAGA
TGACGAAAGAGAGGATCGACGGGGGTATGGCGTAGGGGCTGCAAGGGTGA
TTGGGGAGTGTATAGGTGGGTAGGGCTAGGAAGGCAGGTATCGGCGACTT
TTTGGTTTCCAAACTTGGTGGGAGGTATGACGGCAAACTCGGTACACAGT
AgcttggagggggggattATTGTGCACTATGTCAAGACAGCTCAAGTTCT
GCCTTGGGGCTTTGCGCGTTATTAATACGAAAGGGGGGTGTGGACTTAGA
AGACCTGAAAAATTATCGGTGCGCTTTGGGAGGAAAGTCGAATGTGAGGA
TATCGCTGGACTCCAGGCTTTGAGGCCAAGCAACCGAGAACCTTTAAGCA
AGGAAAGACAACGGAAAGGAGCCATTGCCTCGAAGTGCTCGCTCGCATGC
CGCCCCAGGCCATCCACCGCTCAGAATGTTTTACTTTACATGGGCCGTCC
ACCTGCCCGAGCGGGTGAACAACACGTCAGCTCTgcggcgaggggaaggg
cttATCCTTGGAGAGGACAAGAATGCGTTTCTCGTGCGCGATGTACCCGC
GGATGCTTCCCTTGTAGATCAGGTTCGCCAGCAAACACTCGATCTCGTCG
ATGTCCACGTCCGAGGCCGGGTCCAAACCCTGGTGCAGGCGCATGATGAG
CTCGATGGACAGGCGCGACTCCTTTCCCTTGAGCACCCAGCTATGGCATG
GTCGGGAAGACGGTGGGGAAATATG
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Coding sequence (CDS) from alignment at CM002462.1:684575..686449+

>rna4040 ID=rna4040|Name=rna4040|organism=Nannochloropsis gaditana|type=CDS|length=1950bp|location=Sequence derived from alignment at CM002462.1:684575..686449+ (Nannochloropsis gaditana)
ATgcctacctcctcgccctgcgTACTCGCGTCCCTTTTTATCGTGTTATT
GCTTCTTTACCCGCCCTCAGGCTGCGTCTGTTTCCGCTTGGGGAAGCGTG
AAAACGATGTTGCCTCTATCAACAGCGATGGGGCCTCAACTGCGCCAGCG
CAGGTTCAGCAGTGGAAGGTCCCGCGATTGAGTAAAGTAGTTGCTGAGGC
GATGGGGCACGGTGGCGACAGTGCAACGAGTGTGGAGTGCCATACCGCGG
ATAAACTAATGCAAGAACGAGGGCCTGACAACTATAGGAAGGCTGCTGCC
GAGTATAAACTTCTTTTGGAGAAGCAACCCAACAGCGCGTCTCTCAAGTT
CAAATTCGCCGACGCCAGCGTCTCATTGCTCCGCTCATTGACGAATGCCA
ACGCGGTCCTCATTGACGGCGTCTCCGACAGCAAAGAGAACCGGAAGCTG
TGGAAGACCTATGCATTTGAGGCTTATGACATTTTAAAAGAATTGCACGC
GCAAGAGCCTCAAAACGCGCGAATACACGTCCTCATGACCGAGGCCTACA
CTTACAGGACGTCCAGCAAGGGCATCCTAAAGGCGGCCGTGACGGGCGAT
GGCCTCACCTTCATGCGCCTCGTCGACCAGATTGTCTCCCGCCACCCAAC
TTACGACGCAGGTGTGCCCTTCATTTTTCGAGGGGCTTTCCTTCTGGCCG
CGCCCTGGCCCCTGCGGGACGTGccgaaggcggtggaggcctttGAGAGC
GCCTGGGAGGTGGAGCCTCGGTCCTTGCGCAACAACTTCTTTCTCGGGGT
CAGCCACTTCCATGCAGGATCATTCGAGGCAGCCAGACAGGCCTTCGAAC
GGGCCGTGGGGAAGGATGTGGAATCGGTGGCCGCGACTGAGGTGGACGTG
GCCGAGTTTTTCCGGCGGGAGTCCCGACGGTCCTTGGAGATGACGAAAGA
GAGGATCGACGGGGGTATGGCGTAGATgcctacctcctcgccctgcgTAC
TCGCGTCCCTTTTTATCGTGTTATTGCTTCTTTACCCGCCCTCAGGCTGC
GTCTGTTTCCGCTTGGGGAAGCGTGAAAACGATGTTGCCTCTATCAACAG
CGATGGGGCCTCAACTGCGCCAGCGCAGGTTCAGCAGTGGAAGGTCCCGC
GATTGAGTAAAGTAGTTGCTGAGGCGATGGGGCACGGTGGCGACAGTGCA
ACGAGTGTGGAGTGCCATACCGCGGATAAACTAATGCAAGAACGAGGGCC
TGACAACTATAGGAAGGCTGCTGCCGAGTATAAACTTCTTTTGGAGAAGC
AACCCAACAGCGCGTCTCTCAAGTTCAAATTCGCCGACGCCAGCGTCTCA
TTGCTCCGCTCATTGACGAATGCCAACGCGGTCCTCATTGACGGCGTCTC
CGACAGCAAAGAGAACCGGAAGCTGTGGAAGACCTATGCATTTGAGGCTT
ATGACATTTTAAAAGAATTGCACGCGCAAGAGCCTCAAAACGCGCGAATA
CACGTCCTCATGACCGAGGCCTACACTTACAGGACGTCCAGCAAGGGCAT
CCTAAAGGCGGCCGTGACGGGCGATGGCCTCACCTTCATGCGCCTCGTCG
ACCAGATTGTCTCCCGCCACCCAACTTACGACGCAGGTGTGCCCTTCATT
TTTCGAGGGGCTTTCCTTCTGGCCGCGCCCTGGCCCCTGCGGGACGTGcc
gaaggcggtggaggcctttGAGAGCGCCTGGGAGGTGGAGCCTCGGTCCT
TGCGCAACAACTTCTTTCTCGGGGTCAGCCACTTCCATGCAGGATCATTC
GAGGCAGCCAGACAGGCCTTCGAACGGGCCGTGGGGAAGGATGTGGAATC
GGTGGCCGCGACTGAGGTGGACGTGGCCGAGTTTTTCCGGCGGGAGTCCC
GACGGTCCTTGGAGATGACGAAAGAGAGGATCGACGGGGGTATGGCGTAG
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Synonyms
Publications