rna4034, rna4034 (mRNA) Nannochloropsis gaditana

Overview
Namerna4034
Unique Namerna4034
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2117
Alignment locationCM002462.1:674466..674858 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g83.8115.mrna
Orig protein idgnl|cribi|Naga_100001g83.8115
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:674466..674858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g83gene3880Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26604.1cds4024Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4034rna4034-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4034 ID=rna4034|Name=rna4034|organism=Nannochloropsis gaditana|type=mRNA|length=2117bp
GAAAGTCTTCTGAGTGGTCTGACTGAAAGCCGCCGCGCAAAGTACGGGGG
CACCTAGGGGTCAGGAATGCTCACAGGGTACACGATAAGGATGCAAAGGC
TAGCAAGTGGTTCACGTGCGGGTGCATTGACCACAACCCCCGAAGTTCCT
CAGCAAACGTGGTGGATCCAGCTCCGGCGTGAAGGGCAGATGCAAGAACG
AAGTAAAGATAGGTCAGGCATGTGGTCCAAACGCTTTAGGGGTCCGATTT
TTGCCCGCTGCCGTCTCGATGACTACAAATTTGGATGTACTTGTGACAAC
ATCGACCCTAACCCACGGCTTGCTGGGAATGTCATGTTCATGGCCAAAAA
GATCTTACATTTCACTTCTACTCCTTTCCTCTTCAACACGCTTACGGAGA
CAGCAAGCACCACAACATGTCGACATCCAAAGCATGGGCAGAATATCTGG
CCCGTGGCGTTCCCCCGCAAAAGCGCTATTTGATCGGTGGGAACTGGAAA
GCCAACGGGACCTTGGCACAGACGGCCGGAATTGTCAAGATTCTCAACCA
GGGCGGAGCTATCCCCCTGGAGGCTGAGGTGGTGATTGCGCCCCCGGCGC
ACCTTTTGGGCTACGTGAAGGACAATCTCCGTCCAGATGTGGCTGTTTCC
GCACAAAACTCGGCCCTGACGACCAAGCCGGGCGCCTTCACGGGGGAATT
ACCCGCTGTGCTGCTTAAGGACTTCGGCCTGAACTGGGTAATCATCGGCC
ACTCCGAACGACGCGAGGGCTTTGGGGGCCCGGGGGAGTCGGACGAGGTC
GTGGCAACCAAGACGAAGGTAGCCGTGGATGCTGGCCTCCATGTCATGGC
TTGCGTGGGCGAGAAGCTCGAACAACGCGAGGCGGGGAAGACGACTGAGG
TGGTTTTGTCGCAGTTGAATGCTATTGCATCCAAGCTCGCGCGTGAGGAT
TGGTCCAAGGTGGTAATAGCCTATGAACCTGTGTGGGCCATCGGCACGGG
AAAGGTGGCCACGCCCGAGCAGGCGCAGGAAGTGCATGAGTCCATTCGTG
CCTTTGTGAAGGAGAAGGTTGGGGCGCAGCAGGCAGCCCTCTTGCGGATC
ATCTATGGAGGCTCCGTCAAGGGTTCCTCCGCCCCAGGGCTTATTCTGAA
GCCGGACATTGACGGCTTCTTGGTGGGCGGCGCGTCGTTGACGAGTGACT
TTGTCACCATTATTCGGGCGGTCAAGAGTCCCTAGACTCGGTGGAGGATA
CGGTTAATATCTATCATGGTTGACTCAAGGGAGGGGAAGTGGACGAGGTA
CCCCAGTGTATGCATTTTGAATTTGAGCTAGGAAGAGAGGTTTTGAATGG
GTGGTGGTCATGGGACCTTCACTGTGGGCGGGTGAATTTCGACAAAAATG
ATCCGGGCTTGGACAAAAGAAAACGAGAAGCAGGAAGGGCCTCACAGGCA
GCTCTATACCCATAATCTCCAACAATTTGTCCGCTTAAGCGACTGTGATA
GAAAACTCGGCTCTTTCTCTCGTGTTTCCACGCCTCCCCTTATGAACAAA
GTCGCATCCGCGCTTCTAGCCTCGCTCCTATCCATCGCCCGACCCGGACA
CCACTCTCCACGAGGGTGTGCCGTGCACGCAATGTCCCAAACGACGCACG
AGAAAAAGGTCGCCTCAAATATGTTCCGGCTACAAATTATTGCAATTGTT
GTGAAATGGCTGCTGTTTAAAGAAATGCACACATTCTGACGCGCCTCTCA
TCCTGTTTTCCGATTTTCCACCGATTGAAAATGACAACAGGCGTTGTTCA
CATAAAAAATTTGTTCGTATGCGTACCGAATCATTAACTGAAATTAAAAC
CAAACATTGCTCCGCGTAAAGCCGACACCTCGAGCACCTTCAAGAGGCTC
GCCCATCCCGGGTACTCCCCTCTATCGGCCAGGAGGCAAGCCAGTGCGTG
ATCCCGAAGTTCCCAGCACCTCACCTGCCTCCTCCATTCGAGAGGTACAT
GTCCAAGTCATCGTGACTATCATTGAAATTAAGGCTGGTGCTGCATCGTA
AAAGTTCTTTCTCATCTTTGAAGATCGTCTTGACAGCTGAAGAAGGATAT
AACTTGGTGATCTTGTC
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protein sequence of rna4034

>rna4034-protein ID=rna4034-protein|Name=rna4034|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MQVAPIQRAGRPGGRWLWRHEWRDRADGARRLETWGKGAQHRQGVGSRPH
HRNREPTTRGRTARARTRSPSYILLQLSRRSSKMRKNFYDAAPALISMIV
TMTWTCTSRMEEAGEVLGTSGSRTGLPPGR
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mRNA from alignment at CM002462.1:674466..674858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4034 ID=rna4034|Name=rna4034|organism=Nannochloropsis gaditana|type=mRNA|length=393bp|location=Sequence derived from alignment at CM002462.1:674466..674858- (Nannochloropsis gaditana)
ATGCAAGTCGCTCCTATTCAGCGAGCGGGCAGACCAGGGGGAAGGTGGTT
GTGGCGACATGAATGGCGGGACAGGGCAGACGGCGCGCGACGTCTTGAGA
CTTGGGGAAAGGGTGCACAGCACAGGCAGGGTGTGGGCTCGCGTCCGCAC
CACAGAAACAGAGAACCTACAACAAGAGGAAGAACAGCAAGGGCAAGGAC
AAGATCACCAAGTTATATCCTTCTTCAGCTGTCAAGACGATCTTCAAAGA
TGAGAAAGAACTTTTACGATGCAGCACCAGCCTTAATTTCAATGATAGTC
ACGATGACTTGGACATGTACCTCTCGAATGGAGGAGGCAGGTGAGGTGCT
GGGAACTTCGGGATCACGCACTGGCTTGCCTCCTGGCCGATAG
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Coding sequence (CDS) from alignment at CM002462.1:674466..674858-

>rna4034 ID=rna4034|Name=rna4034|organism=Nannochloropsis gaditana|type=CDS|length=393bp|location=Sequence derived from alignment at CM002462.1:674466..674858- (Nannochloropsis gaditana)
ATGCAAGTCGCTCCTATTCAGCGAGCGGGCAGACCAGGGGGAAGGTGGTT
GTGGCGACATGAATGGCGGGACAGGGCAGACGGCGCGCGACGTCTTGAGA
CTTGGGGAAAGGGTGCACAGCACAGGCAGGGTGTGGGCTCGCGTCCGCAC
CACAGAAACAGAGAACCTACAACAAGAGGAAGAACAGCAAGGGCAAGGAC
AAGATCACCAAGTTATATCCTTCTTCAGCTGTCAAGACGATCTTCAAAGA
TGAGAAAGAACTTTTACGATGCAGCACCAGCCTTAATTTCAATGATAGTC
ACGATGACTTGGACATGTACCTCTCGAATGGAGGAGGCAGGTGAGGTGCT
GGGAACTTCGGGATCACGCACTGGCTTGCCTCCTGGCCGATAG
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Synonyms
Publications