rna4031, rna4031 (mRNA) Nannochloropsis gaditana

Overview
Namerna4031
Unique Namerna4031
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2084
Alignment locationCM002462.1:665896..667778 -

Link to JBrowse

Properties
Property NameValue
Productzinc transporter
Orig transcript idgnl|cribi|Naga_100001g86.8194.mrna
Orig protein idgnl|cribi|Naga_100001g86.8194
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:665896..667778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g86gene3877Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26683.1cds4021Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4031rna4031-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4031 ID=rna4031|Name=rna4031|organism=Nannochloropsis gaditana|type=mRNA|length=2084bp
ACGTCCTCGTCTGCTTTCCTCTCTCATGCCTTTGACAGAAAACCTACGCT
CGAGTAAAACCTGGGAGCTATTTTGGGTATGAAATGCGCATTTTTTTGTT
AAGGGCGTGATTAGGAGTGCTTAAACGGAAACGCATTGAAGGCAGCGATT
GAAGACACGCGTCGATCAAGGCCGGAAGACTGATGCCCATGAATTTCCGA
ATTTTGGCTTCATTACCATCCATATATCAAACACTTAAAGCCGCTACCAC
ATGCGGGAAGTAGAGATCGGTGCATGCGACGCTCTTTCCCCGACCCAGGA
TTACTTGCAAGGGGCCTCCTTCCTTGACGGGAAATGCATTATTGTTCTAC
CTCTCGACGGCAAGGCGGTGCTTGTGAGTATACCCTTGGTGCAAAGGAAT
CTAAGCGCAAGCACGCAGACAGTGGGCACGTACGGTGCAAAAAACGGAAC
TCTGCATCTAGCATCTGTATCACCTTGCGCAACAAGGCTGGCACTAAATT
TTGCATGCGGCATTCTAGAGGTTTATGAGGTCGTTATGAACGCGGAGGGC
CGTAATGTGGAGGCTGTGACCTTTCTTGCGTCGACTCGAGCAGAGAGGTG
AGTCTCCGGTTGTTGAGGTCGAGGAGGGTCTAGTCTTTCGTGAGTCACGA
GTCTCCGTACTATATTATCCCAAGCAAGAAGATACGAAAGCTGAGTTGGC
AGTGCACTTCAAAGGCAGCTTATCTAGGCGTGTCAGATGTCCGACGATTG
CGCGTCTATGACTGCAGAGCTGGAGGTACGGGTGGTCTGGCGCTCGTCCA
CGAGACGATACTTTCAGAGCCCATAAACGACTGGTCATGGCTGGACTCCC
AACGAATCGCTTTATTGTTGGATAATGGTGTGCAGCTGTGCGGTTTGAGG
CCGAATGCTCGGCCGGTTGGCGTCATGTCATGCGAGGCACCAGACTCTCG
GCCCTTGGGTGTGGGATTTCAGGAGAAACGAAAGGTCATGTCCCCTGTGC
TAGTCAGCGGCGATACAGTTTACTTTGCCATCCTTACGGAGCCATGTTTG
CAGACGCAAGTATGTTCTGCCGATAGCAAGCATCGCGGGGTGAACGAGAC
CCTGGCGAGGTTACGCGGCCTCCAAGGGCAGATCCGGCAGAGAGAGAACA
TGGAGAGGGAAGGCGTCCGGGAGGATGATGGGGGCAAAACTAACGCTATG
TCATTGCAGGGAGGAGGGAAGGAGAAGGTGAAGGCACCAGTTGTGACAGA
GGACGGGGGGAGCGTCGGTATCGGTAACAATAGCATCGAGGTTATCGATT
TGTGCGGGAAGCTCGGTCTCGGCTCTGAGAGCGATCCTGCCGCGTCGCCT
TCTTCTCTGCTCGACAGCCTGATCCAAAATTGCTCACGTCTTAAAGTCCC
CAGCCTCGACACGTCAGTTCCGTCCCCTGATCAACAGGCCAAGCTAGTGG
TCTCAAGGTTTATGGCCGGAGGCGCTGCAAGGCGGGAGGTCGTCCTGACC
ACGTTCGCCCAGGACGGAAGGCCCTCGCTGCTCGCTGCTTCTCGGACACA
CCTTGCCCTCGCCGACCCATGGCGCTCCATCCTGCACGTCTATTTTCTCC
CCGATAGTTTCGCCCGCGTCGCCACGACAGAGAAGCGCATGCTTGAGCTT
CCTGTCGGCTTTCTCCCCCGCGGTCTCGTCCTGGCGGCGTCCGGGGGGCT
CTACTGTCTGGCCACTCAAATTAAGCGAGGAAAGGGCAGCGAGGAGGGCT
CGGCCACCTCCTGGAAGCTACTCCACTTCCCTCTCCAAGAGCCTGGAGCC
AGTCCGGAGGCTGGGCTGCCGACGTGCCCGCCCCCAGGGGGCCCTTCATG
TGGACCGAGGGCGGCCTGGCCAAAAGCTCCCTCCTCAATAACGGGCGACG
TTCAGCTCCGAGAGAAGGCGGACATAGTGGCACTGGTCCAGGGCCTTGAG
CGGAGGATGAACGCACGCTTTGACGCGCTGGAAGCCCGCCTGGACGGGCT
CGCACGGCATCTCGGCGCTCTGTGAACGAGGACACGTCTGCCAAATAAAG
CACGCACAAGAAAACAATGTAAAGGAAGTCGTCA
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protein sequence of rna4031

>rna4031-protein ID=rna4031-protein|Name=rna4031|organism=Nannochloropsis gaditana|type=polypeptide|length=480bp
MKGWMRTLSVFLFALFGLKWAIHAHPVQGNNDCEAWESSACLASHNFGRN
HGFELPFIAANSFSNHTLPAGEWAKAFGATAVISIFPTLILPFIPLVSFV
DGVPSLHEDLHRLLLSFATGGLLGEVFLHSLPHLLERHDHFGSSHGHHHH
SVGTACTLDKTKAECCREEQEHHEKDGVRGDEGEALRVSMHVLAGFLLFF
ISEKVVKLLLGEEDGGHIHGHNHGKHTTLHINKGMVNGEIEGEREEEMEQ
EEQGEEEEDQDWSDSHKLRRRSPRIRERYSNQERRQMREAAAAAGGTNGG
HGMKALAPTAKRKDVPRLGGCGRKGTTALKSSGYLNVVIDVLHNLTDGVA
IGASFASGHGVGVATTISVFLHEIPHEIGDFAILVQSGLSVQSAFLLQFC
TAVAAFIGTLLGLVAKRQEGLERLVLALTTGGFLYVATVSVLPELLAGKP
GGAQSLREVGGVVGGIGLMAWVALGEAHAH
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mRNA from alignment at CM002462.1:665896..667778-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4031 ID=rna4031|Name=rna4031|organism=Nannochloropsis gaditana|type=mRNA|length=1883bp|location=Sequence derived from alignment at CM002462.1:665896..667778- (Nannochloropsis gaditana)
TTCTCGCGAAAATAGCTGATTGGAAGGCTTTAAGACGGGAATTGCGTCTT
GTATTCAGCGCCAATGAAGGGGTGGATGAGGACGCTGTCTGTCTTTCTCT
TCGCGCTGTTTGGATTGAAATGGGCAATACATGCGCACCCAGTGCAAGGG
AATAATGATTGTGAAGCATGGGAGTCGTCGGCATGCTTAGCATCCCATAA
TTTCGGACGCAATCATGGATTTGAGCTGCCTTTCATAGCTGCCAACTCAT
TTTCAAACCATACCCTGCCCGCGGGGGAGTGGGCCAAGGCGTTCGGCGCT
ACGGCCGTGATAAGCATCTTCCCAACCTTGATCTTGCCCTTTATCCCTCT
GGTAAGCTTTGTGGATGGTGTCCCCTCTTTGCATGAAGATTTACACAGGC
TGCTGCTCAGCTTTGCCACGGGAGGTCTGCTTGGGGAGGTCTTTTTGCAT
TCTTTGCCGCATTTGCTCGAGCGGCACGACCACTTCGGCAGTAGTCATGG
CCACCACCACCATTCCGTGGGCACCGCCTGCACGTTGGATAAAACTAAAG
CTGAGTGCTGCCGAGAGGAGCAAGAGCACCACGAAAAGGACGGCGTGCGA
GGAGATGAAGGGGAGGCCCTGCGGGTAAGCATGCACGTGCTTGCGGGCTT
CCTGTTGTTTTTCATTTCCGAGAAAGTCGTCAAGCTACTCCTTGGCGAGG
AGGACGGTGGTCACATCCATGGACACAATCATGGAAAGCATACGACACTG
CACATAAATAAGGGGATGGTCAATGGAGAAATTGAGGGGGAGCGGGAAGA
GGAGATGGAACAAGAGGAGCAGGGTGAGGAAGAGGAGGATCAGGACTGGA
GTGATTCACATAAACTACGACGCCGAAGTCCTCGTATTCGTGAACGATAT
TCGAACCAAGAGCGGCGCCAGATGAGGGAGGCAGCAGCAGCGGCAGGAGG
GACGAATGGCGGGCACGGAATGAAAGCGCTAGCACCTACGGCCAAGAGAA
AAGATGTGCCGCGATTGGGTGGGTGTGGGAGGAAAGGGACCACAGCGCTT
AAATCGAGCGGTTACCTGAACGTCGTCATAGACGTGCTCCATAATCTAAC
GGACGGTGTGGCCATCGGTGCATCCTTTGCCTCGGGCCACGGGGTCGGGG
TGGCGACGACCATCTCGGTGTTTTTGCACGAGATTCCGCACGAGATCGGG
GATTTCGCGATCCTCGTCCAGAGCGGCCTGAGCGTCCAGAGCGCTTTCCT
TTTGCAGTTTTGCACGGCCGTCGCTGCCTTTATAGGCACCTTGTTGGGGC
TGGTGGCCAAGCGGCAGGAGGGCTTGGAGCGCCTGGTCCTGGCGCTGACC
ACCGGGGGCTTTCTCTACGTAGCCACGGTCTCGGTGCTGCCCGAGCTGCT
GGCGGGGAAGCCGGGGGGCGCGCAGTCTCTGAGGGAGGTGGGAGGCGTGG
TGGGCGGGATAGGACTAATGGCCTGGGTGGCCCTGGGGGAGGCTCACGCG
CACTAGGCCGGCACGGGGGGGGTGCGGGCAGGAAATAGTGGACGAAAGAG
GTGAGGGGACGTATCCCGCAAAGTATAAAAGTAGCAGCAAGAGCACAGCC
CTAGTTCAAATTCAGCACATGCAGGGCTAGAGGCCATTCGGTGCCAGCAC
GTTTTCTGACGGCACGGCGAACCAGAGGCCATGATAAGGACGCTCTGTGT
CATAGATAGGAATGAGAAAAAAGGGGAAGCTACGAGAGTCGATGAAACTC
GTGAAGGATAGCGGCGTCAGACCGCATTTTCTCACTGGCAGGGAGACGTA
CAAAGCTAAGCATGTAAGCGGCGAGCAGGGAGCAGGCGACATCATGTACA
AGAAGAAAATAGCAGGGTGAACGGTATCAATGA
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Coding sequence (CDS) from alignment at CM002462.1:665896..667778-

>rna4031 ID=rna4031|Name=rna4031|organism=Nannochloropsis gaditana|type=CDS|length=1443bp|location=Sequence derived from alignment at CM002462.1:665896..667778- (Nannochloropsis gaditana)
ATGAAGGGGTGGATGAGGACGCTGTCTGTCTTTCTCTTCGCGCTGTTTGG
ATTGAAATGGGCAATACATGCGCACCCAGTGCAAGGGAATAATGATTGTG
AAGCATGGGAGTCGTCGGCATGCTTAGCATCCCATAATTTCGGACGCAAT
CATGGATTTGAGCTGCCTTTCATAGCTGCCAACTCATTTTCAAACCATAC
CCTGCCCGCGGGGGAGTGGGCCAAGGCGTTCGGCGCTACGGCCGTGATAA
GCATCTTCCCAACCTTGATCTTGCCCTTTATCCCTCTGGTAAGCTTTGTG
GATGGTGTCCCCTCTTTGCATGAAGATTTACACAGGCTGCTGCTCAGCTT
TGCCACGGGAGGTCTGCTTGGGGAGGTCTTTTTGCATTCTTTGCCGCATT
TGCTCGAGCGGCACGACCACTTCGGCAGTAGTCATGGCCACCACCACCAT
TCCGTGGGCACCGCCTGCACGTTGGATAAAACTAAAGCTGAGTGCTGCCG
AGAGGAGCAAGAGCACCACGAAAAGGACGGCGTGCGAGGAGATGAAGGGG
AGGCCCTGCGGGTAAGCATGCACGTGCTTGCGGGCTTCCTGTTGTTTTTC
ATTTCCGAGAAAGTCGTCAAGCTACTCCTTGGCGAGGAGGACGGTGGTCA
CATCCATGGACACAATCATGGAAAGCATACGACACTGCACATAAATAAGG
GGATGGTCAATGGAGAAATTGAGGGGGAGCGGGAAGAGGAGATGGAACAA
GAGGAGCAGGGTGAGGAAGAGGAGGATCAGGACTGGAGTGATTCACATAA
ACTACGACGCCGAAGTCCTCGTATTCGTGAACGATATTCGAACCAAGAGC
GGCGCCAGATGAGGGAGGCAGCAGCAGCGGCAGGAGGGACGAATGGCGGG
CACGGAATGAAAGCGCTAGCACCTACGGCCAAGAGAAAAGATGTGCCGCG
ATTGGGTGGGTGTGGGAGGAAAGGGACCACAGCGCTTAAATCGAGCGGTT
ACCTGAACGTCGTCATAGACGTGCTCCATAATCTAACGGACGGTGTGGCC
ATCGGTGCATCCTTTGCCTCGGGCCACGGGGTCGGGGTGGCGACGACCAT
CTCGGTGTTTTTGCACGAGATTCCGCACGAGATCGGGGATTTCGCGATCC
TCGTCCAGAGCGGCCTGAGCGTCCAGAGCGCTTTCCTTTTGCAGTTTTGC
ACGGCCGTCGCTGCCTTTATAGGCACCTTGTTGGGGCTGGTGGCCAAGCG
GCAGGAGGGCTTGGAGCGCCTGGTCCTGGCGCTGACCACCGGGGGCTTTC
TCTACGTAGCCACGGTCTCGGTGCTGCCCGAGCTGCTGGCGGGGAAGCCG
GGGGGCGCGCAGTCTCTGAGGGAGGTGGGAGGCGTGGTGGGCGGGATAGG
ACTAATGGCCTGGGTGGCCCTGGGGGAGGCTCACGCGCACTAG
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Synonyms
Publications