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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100001g94.8227.mrna |
| Orig protein id | gnl|cribi|Naga_100001g94.8227 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:647721..650491 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4023 ID=rna4023|Name=rna4023|organism=Nannochloropsis gaditana|type=mRNA|length=2610bp
GCCTGAGCCTCGTATACTTGCATCGAACGCGTCTTTGAGAGGCAGGCTCC
GATTTTGACAAGCCATCGGACACCAACCCTTACCGCGTGTAATGGGCCTC
TCCGTTTGTCAATCATGAACGAGCCACTACTTCAGAGGAGTAATAGTGAC
TCCGCGCTGCCTACTTTGGGTAGCTGGGGCATGCAGAGTATCCTTGTCAG
TGGGCGTATGGGAAGATTGCAAGATTCGGACAGGATCATGGCATTCACGG
ACGCAATTCTAGCTATTATATGCACGTCTTGTGCAGTCCCGCTCTGGTCA
AATGGAACACGTAACTTCAACCCGGTGCGTTTGGTTCCTTTTGTTACCAC
TTTCTTCATTTTGAGTCGGCTGTGGTGAGTAGCGTCGGGGGTTGACTGGG
TGTGAAGGAACCACTCTTTTTTTTTAGCTGAGCAAGTGCCGCCTAAGAGA
TTCGTTATGGTCTGATGAGGAGTTGCAGGTCTTCTTCACAACATCAATGC
TCAGTTTTCAACGATCGAATGATGACGCGAATGTTGAGCATATCTTATTA
AGTTATGATGCCTGATATGCATATATGGCCCTTTGCCTCTCTGTAAGGCC
TTGATCGTCTTTGTTGTGTTCCCCGATTCCTACTGACTGAAGGGTGTGGG
CATAGGCAACCAACCCGCTTTGCCGTGCTCCACGTATCGATGTCATTATG
TTTTGTGTTTTTGGTGTCCATTCGCCGTAAGCTCTCTCGCTCGACTCCAA
TTCTTCTCTTTACTCCTGGTCCTCTTGGTACATGACTTGTGTGGTAGGGA
AATTCACTGCCAAGATTTTTGCCGCTTGGAGCACGTGGATGAGAAACTGC
CCCAAATTAATGTGTTATGGATCGCCTCCATGACGCTGCTTCCCTTTCAC
TTTGTCATCCTCTTCGTGCCCGCGACCGCCACGGGCCACCTCCTCTACCT
CGGGCTCTGGGCTTGCGTTCTCCTCCTGGTCGGGGTCGCTTCCCACTGGC
TCTCCTCCGCCACCCAACGCCTTTCAGCTTTACGCCTGGGCGTTCAGGAA
AAGAAAGGATGGCAGCAGCGTGACCTGGCTCTGACGCTCGCCCTATTCCA
GGTCGGGCTCGTCACAGCGGGGGCCTCGCTCCTCGCGCGGGTGGAGCACC
TGGACATCTTGACGGACGACTACAAGAAAGCCTTTCGCCCAGGTCACATC
AGGGTCGCAGCTGTCCTTTTCGTCGTGGGTGTGCTGATTTACTGGCTGTG
CCTCGCGCTTCGAATCAATTTTCGGATCCTGCAGATGTGGCTGGGGCCAC
GCAGCGCCGTGCTTTTCAATGGGGCCGTCCCGCGGGTGCGGGTGGAGATT
TTCTCGGACGGCGTCTACGCAGCTGCAGCGACAGGGCTGATGATTGAGGT
GTTGAGCGGGCTTTTGCGCGCCGACGAGGGTGCCGAGGGGGGGGGCGGGC
AGCACGGAGGCTCGGTGTGGCCCAGCCTCGTCAACTACATCTATTGCTTC
CACGTGGTGGCCGTGCTTCACCGCTCGCATCAAAACATTGTCGCCAAGAT
TTCTGTCTTCAACGAGCGGCTCCTTGCCATCAACAGCCTGGTCTGCCTCT
CGGTCGCCTTCATCCCCACCCTCTCCACCATCCTAGACCCCTCCTGGGGC
CACCACCCCGCCTCGCTCACCACGGGCGCGGCCTTCTTGCTCGTCGCCAG
TCTCTTGCTTCTCTTCCTCCTGATGGCAGCACTGCAAGCGGCACCACTCG
CCGAAGCACCGGACGGTATCAATGAAAGCGCCGAAACCCTGCTCTCGGAG
ATGCTGGGCCGACCAATCGCCTGCGGAACGGGGATCATACCCGGAAACAT
CCTGGCCTCGCCGGCGGACAGCCCACGCTCAAGTCAGGAAATCGAGAAGA
AGGACGACGTGGAGGATATGCTGATGCCTAGGCGCGCGCCTCGTCTCTTT
CAAGAGCCCTCTTGCCTCGCGCAAGGCCGGGGAATCGACTCAAATTTGCT
GCGGCGTTTGCAAGCCATCCGGGACGAGTACGAGATCGGCAGCGCCAGCA
TCCTCCCCGTCATGGCTTTCTTCCTCACACTGTTGACCGCATCCCTACAA
TTCGCGGGAGAGACGAGCCCGTACACGCCGGCCGCCTTTCTGCTCACCTT
CTTCGTCTACACCGCCGAGCACCGGATTCTGCGGCCCCGCGCGGCCCGAA
AGATTCGAAAAATCCAGAGGCAACTCCAGCAACACCAGCAGGAGCAGCAT
GGATATCCACCGTTTCTGCCTGCGAAGGTGTCTCCGTCCTCCAAATTGGA
AACCGTACGTGAAGAGTCGCTTGTCTCCTCTGTGGGAGAATCGGAGGAGG
GGGCAGAGAGGCTCGTGGGAGTGATGGAAGGGGGGGAGTACAAGGAGGAG
GGCGACCGACACGAATCGCGAGCAGTGTCGGGGGATCTAAATCGCGATAA
ATATGTCCACTTCAGAGATAGCGCACACATTTGATAGTCTCCCGGTCCCG
GAACAGCTAAAGTGTACAGATAAATTGGCCATGGGACAATTGCCACCCAT
CTCCGTGCCTAAATCAAATTCAAAATCAAATGAAAAGTTAACCATCGCTA
GAACATCGAG back to topprotein sequence of rna4023 >rna4023-protein ID=rna4023-protein|Name=rna4023|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MEHVTSTREIHCQDFCRLEHVDEKLPQINVLWIASMTLLPFHFVILFVPA
TATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRD
LALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFV
VGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAA
AATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHR
SHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTT
GAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIAC
GTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQ
GRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPY
TPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPA
KVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRA
VSGDLNRDKYVHFRDSAHI back to topmRNA from alignment at CM002462.1:647721..650491- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4023 ID=rna4023|Name=rna4023|organism=Nannochloropsis gaditana|type=mRNA|length=2771bp|location=Sequence derived from alignment at CM002462.1:647721..650491- (Nannochloropsis gaditana)
GAGCCTCGTATACTTGCATCGAACGCGTCTTTGAGAGGCAGGCTCCGATT
TTGACAAGCCATCGGACACCAACCCTTACCGCGTGTAATGGGCCTCTCCG
TTTGTCAATCATGAACGAGCCACTACTTCAGAGGAGTAATAGTGACTCCG
CGCTGCCTACTTTGGGTAGCTGGGGCATGCAGAGTATCCTTGTCAGTGGG
CGTATGGGAAGATTGCAAGATTCGGACAGGTGAGGACACATGGGGATGCA
AACAAAAGATTGGATGAGGGCGCGAGGCTTGTGTATGCATGTGTAACTTT
CGAGATGGGATAGATTGGAGCTTTCATGTACCCGAAATGCTAATTCCGCG
AGCGTAAACCTCCTATTTGGCGTTGACTACGCCATCTTTGCTAGGATCAT
GGCATTCACGGACGCAATTCTAGCTATTATATGCACGTCTTGTGCAGTCC
CGCTCTGGTCAAATGGAACACGTAACTTCAACCCGGTGCGTTTGGTTCCT
TTTGTTACCACTTTCTTCATTTTGAGTCGGCTGTGGTGAGTAGCGTCGGG
GGTTGACTGGGTGTGAAGGAACCACTCTTTTTTTTTAGCTGAGCAAGTGC
CGCCTAAGAGATTCGTTATGGTCTGATGAGGAGTTGCAGGTCTTCTTCAC
AACATCAATGCTCAGTTTTCAACGATCGAATGATGACGCGAATGTTGAGC
ATATCTTATTAAGTTATGATGCCTGATATGCATATATGGCCCTTTGCCTC
TCTGTAAGGCCTTGATCGTCTTTGTTGTGTTCCCCGATTCCTACTGACTG
AAGGGTGTGGGCATAGGCAACCAACCCGCTTTGCCGTGCTCCACGTATCG
ATGTCATTATGTTTTGTGTTTTTGGTGTCCATTCGCCGTAAGCTCTCTCG
CTCGACTCCAATTCTTCTCTTTACTCCTGGTCCTCTTGGTACATGACTTG
TGTGGTAGGGAAATTCACTGCCAAGATTTTTGCCGCTTGGAGCACGTGGA
TGAGAAACTGCCCCAAATTAATGTGTTATGGATCGCCTCCATGACGCTGC
TTCCCTTTCACTTTGTCATCCTCTTCGTGCCCGCGACCGCCACGGGCCAC
CTCCTCTACCTCGGGCTCTGGGCTTGCGTTCTCCTCCTGGTCGGGGTCGC
TTCCCACTGGCTCTCCTCCGCCACCCAACGCCTTTCAGCTTTACGCCTGG
GCGTTCAGGAAAAGAAAGGATGGCAGCAGCGTGACCTGGCTCTGACGCTC
GCCCTATTCCAGGTCGGGCTCGTCACAGCGGGGGCCTCGCTCCTCGCGCG
GGTGGAGCACCTGGACATCTTGACGGACGACTACAAGAAAGCCTTTCGCC
CAGGTCACATCAGGGTCGCAGCTGTCCTTTTCGTCGTGGGTGTGCTGATT
TACTGGCTGTGCCTCGCGCTTCGAATCAATTTTCGGATCCTGCAGATGTG
GCTGGGGCCACGCAGCGCCGTGCTTTTCAATGGGGCCGTCCCGCGGGTGC
GGGTGGAGATTTTCTCGGACGGCGTCTACGCAGCTGCAGCGACAGGGCTG
ATGATTGAGGTGTTGAGCGGGCTTTTGCGCGCCGACGAGGGTGCCGAGGG
GGGGGGCGGGCAGCACGGAGGCTCGGTGTGGCCCAGCCTCGTCAACTACA
TCTATTGCTTCCACGTGGTGGCCGTGCTTCACCGCTCGCATCAAAACATT
GTCGCCAAGATTTCTGTCTTCAACGAGCGGCTCCTTGCCATCAACAGCCT
GGTCTGCCTCTCGGTCGCCTTCATCCCCACCCTCTCCACCATCCTAGACC
CCTCCTGGGGCCACCACCCCGCCTCGCTCACCACGGGCGCGGCCTTCTTG
CTCGTCGCCAGTCTCTTGCTTCTCTTCCTCCTGATGGCAGCACTGCAAGC
GGCACCACTCGCCGAAGCACCGGACGGTATCAATGAAAGCGCCGAAACCC
TGCTCTCGGAGATGCTGGGCCGACCAATCGCCTGCGGAACGGGGATCATA
CCCGGAAACATCCTGGCCTCGCCGGCGGACAGCCCACGCTCAAGTCAGGA
AATCGAGAAGAAGGACGACGTGGAGGATATGCTGATGCCTAGGCGCGCGC
CTCGTCTCTTTCAAGAGCCCTCTTGCCTCGCGCAAGGCCGGGGAATCGAC
TCAAATTTGCTGCGGCGTTTGCAAGCCATCCGGGACGAGTACGAGATCGG
CAGCGCCAGCATCCTCCCCGTCATGGCTTTCTTCCTCACACTGTTGACCG
CATCCCTACAATTCGCGGGAGAGACGAGCCCGTACACGCCGGCCGCCTTT
CTGCTCACCTTCTTCGTCTACACCGCCGAGCACCGGATTCTGCGGCCCCG
CGCGGCCCGAAAGATTCGAAAAATCCAGAGGCAACTCCAGCAACACCAGC
AGGAGCAGCATGGATATCCACCGTTTCTGCCTGCGAAGGTGTCTCCGTCC
TCCAAATTGGAAACCGTACGTGAAGAGTCGCTTGTCTCCTCTGTGGGAGA
ATCGGAGGAGGGGGCAGAGAGGCTCGTGGGAGTGATGGAAGGGGGGGAGT
ACAAGGAGGAGGGCGACCGACACGAATCGCGAGCAGTGTCGGGGGATCTA
AATCGCGATAAATATGTCCACTTCAGAGATAGCGCACACATTTGATAGTC
TCCCGGTCCCGGAACAGCTAAAGTGTACAGATAAATTGGCCATGGGACAA
TTGCCACCCATCTCCGTGCCTAAATCAAATTCAAAATCAAATGAAAAGTT
AACCATCGCTAGAACATCGAG back to topCoding sequence (CDS) from alignment at CM002462.1:647721..650491- >rna4023 ID=rna4023|Name=rna4023|organism=Nannochloropsis gaditana|type=CDS|length=3420bp|location=Sequence derived from alignment at CM002462.1:647721..650491- (Nannochloropsis gaditana)
GGAAATTCACTGCCAAGATTTTTGCCGCTTGGAGCACGTGGATGAGAAAC
TGCCCCAAATTAATGTGTTATGGATCGCCTCCATGACGCTGCTTCCCTTT
CACTTTGTCATCCTCTTCGTGCCCGCGACCGCCACGGGCCACCTCCTCTA
CCTCGGGCTCTGGGCTTGCGTTCTCCTCCTGGTCGGGGTCGCTTCCCACT
GGCTCTCCTCCGCCACCCAACGCCTTTCAGCTTTACGCCTGGGCGTTCAG
GAAAAGAAAGGATGGCAGCAGCGTGACCTGGCTCTGACGCTCGCCCTATT
CCAGGTCGGGCTCGTCACAGCGGGGGCCTCGCTCCTCGCGCGGGTGGAGC
ACCTGGACATCTTGACGGACGACTACAAGAAAGCCTTTCGCCCAGGTCAC
ATCAGGGTCGCAGCTGTCCTTTTCGTCGTGGGTGTGCTGATTTACTGGCT
GTGCCTCGCGCTTCGAATCAATTTTCGGATCCTGCAGATGTGGCTGGGGC
CACGCAGCGCCGTGCTTTTCAATGGGGCCGTCCCGCGGGTGCGGGTGGAG
ATTTTCTCGGACGGCGTCTACGCAGCTGCAGCGACAGGGCTGATGATTGA
GGTGTTGAGCGGGCTTTTGCGCGCCGACGAGGGTGCCGAGGGGGGGGGCG
GGCAGCACGGAGGCTCGGTGTGGCCCAGCCTCGTCAACTACATCTATTGC
TTCCACGTGGTGGCCGTGCTTCACCGCTCGCATCAAAACATTGTCGCCAA
GATTTCTGTCTTCAACGAGCGGCTCCTTGCCATCAACAGCCTGGTCTGCC
TCTCGGTCGCCTTCATCCCCACCCTCTCCACCATCCTAGACCCCTCCTGG
GGCCACCACCCCGCCTCGCTCACCACGGGCGCGGCCTTCTTGCTCGTCGC
CAGTCTCTTGCTTCTCTTCCTCCTGATGGCAGCACTGCAAGCGGCACCAC
TCGCCGAAGCACCGGACGGTATCAATGAAAGCGCCGAAACCCTGCTCTCG
GAGATGCTGGGCCGACCAATCGCCTGCGGAACGGGGATCATACCCGGAAA
CATCCTGGCCTCGCCGGCGGACAGCCCACGCTCAAGTCAGGAAATCGAGA
AGAAGGACGACGTGGAGGATATGCTGATGCCTAGGCGCGCGCCTCGTCTC
TTTCAAGAGCCCTCTTGCCTCGCGCAAGGCCGGGGAATCGACTCAAATTT
GCTGCGGCGTTTGCAAGCCATCCGGGACGAGTACGAGATCGGCAGCGCCA
GCATCCTCCCCGTCATGGCTTTCTTCCTCACACTGTTGACCGCATCCCTA
CAATTCGCGGGAGAGACGAGCCCGTACACGCCGGCCGCCTTTCTGCTCAC
CTTCTTCGTCTACACCGCCGAGCACCGGATTCTGCGGCCCCGCGCGGCCC
GAAAGATTCGAAAAATCCAGAGGCAACTCCAGCAACACCAGCAGGAGCAG
CATGGATATCCACCGTTTCTGCCTGCGAAGGTGTCTCCGTCCTCCAAATT
GGAAACCGTACGTGAAGAGTCGCTTGTCTCCTCTGTGGGAGAATCGGAGG
AGGGGGCAGAGAGGCTCGTGGGAGTGATGGAAGGGGGGGAGTACAAGGAG
GAGGGCGACCGACACGAATCGCGAGCAGTGTCGGGGGATCTAAATCGCGA
TAAATATGTCCACTTCAGAGATAGCGCACACATTTGAATGGAACACGTAA
CTTCAACCCGGGAAATTCACTGCCAAGATTTTTGCCGCTTGGAGCACGTG
GATGAGAAACTGCCCCAAATTAATGTGTTATGGATCGCCTCCATGACGCT
GCTTCCCTTTCACTTTGTCATCCTCTTCGTGCCCGCGACCGCCACGGGCC
ACCTCCTCTACCTCGGGCTCTGGGCTTGCGTTCTCCTCCTGGTCGGGGTC
GCTTCCCACTGGCTCTCCTCCGCCACCCAACGCCTTTCAGCTTTACGCCT
GGGCGTTCAGGAAAAGAAAGGATGGCAGCAGCGTGACCTGGCTCTGACGC
TCGCCCTATTCCAGGTCGGGCTCGTCACAGCGGGGGCCTCGCTCCTCGCG
CGGGTGGAGCACCTGGACATCTTGACGGACGACTACAAGAAAGCCTTTCG
CCCAGGTCACATCAGGGTCGCAGCTGTCCTTTTCGTCGTGGGTGTGCTGA
TTTACTGGCTGTGCCTCGCGCTTCGAATCAATTTTCGGATCCTGCAGATG
TGGCTGGGGCCACGCAGCGCCGTGCTTTTCAATGGGGCCGTCCCGCGGGT
GCGGGTGGAGATTTTCTCGGACGGCGTCTACGCAGCTGCAGCGACAGGGC
TGATGATTGAGGTGTTGAGCGGGCTTTTGCGCGCCGACGAGGGTGCCGAG
GGGGGGGGCGGGCAGCACGGAGGCTCGGTGTGGCCCAGCCTCGTCAACTA
CATCTATTGCTTCCACGTGGTGGCCGTGCTTCACCGCTCGCATCAAAACA
TTGTCGCCAAGATTTCTGTCTTCAACGAGCGGCTCCTTGCCATCAACAGC
CTGGTCTGCCTCTCGGTCGCCTTCATCCCCACCCTCTCCACCATCCTAGA
CCCCTCCTGGGGCCACCACCCCGCCTCGCTCACCACGGGCGCGGCCTTCT
TGCTCGTCGCCAGTCTCTTGCTTCTCTTCCTCCTGATGGCAGCACTGCAA
GCGGCACCACTCGCCGAAGCACCGGACGGTATCAATGAAAGCGCCGAAAC
CCTGCTCTCGGAGATGCTGGGCCGACCAATCGCCTGCGGAACGGGGATCA
TACCCGGAAACATCCTGGCCTCGCCGGCGGACAGCCCACGCTCAAGTCAG
GAAATCGAGAAGAAGGACGACGTGGAGGATATGCTGATGCCTAGGCGCGC
GCCTCGTCTCTTTCAAGAGCCCTCTTGCCTCGCGCAAGGCCGGGGAATCG
ACTCAAATTTGCTGCGGCGTTTGCAAGCCATCCGGGACGAGTACGAGATC
GGCAGCGCCAGCATCCTCCCCGTCATGGCTTTCTTCCTCACACTGTTGAC
CGCATCCCTACAATTCGCGGGAGAGACGAGCCCGTACACGCCGGCCGCCT
TTCTGCTCACCTTCTTCGTCTACACCGCCGAGCACCGGATTCTGCGGCCC
CGCGCGGCCCGAAAGATTCGAAAAATCCAGAGGCAACTCCAGCAACACCA
GCAGGAGCAGCATGGATATCCACCGTTTCTGCCTGCGAAGGTGTCTCCGT
CCTCCAAATTGGAAACCGTACGTGAAGAGTCGCTTGTCTCCTCTGTGGGA
GAATCGGAGGAGGGGGCAGAGAGGCTCGTGGGAGTGATGGAAGGGGGGGA
GTACAAGGAGGAGGGCGACCGACACGAATCGCGAGCAGTGTCGGGGGATC
TAAATCGCGATAAATATGTCCACTTCAGAGATAGCGCACACATTTGAATG
GAACACGTAACTTCAACCCG back to top
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