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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100001g108.8287.mrna |
| Orig protein id | gnl|cribi|Naga_100001g108.8287 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:617511..620829 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4009 ID=rna4009|Name=rna4009|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp
CGAGTTGTATAATGCGCACTAAACTTCTTTAGCGCTCTTGGCATGTTCCG
AGAAGTGTGTTGCAAGCTTCTTCCGCGATCAGCCTCAGGCTAGCTCGCCC
AGCCGAGGGGGGTCGTACGTCCTCAGTGATAGTCCTTCTCACCTAATAAT
GCAAACACCATCATTAAATTATCGGTAGCCATGCAGGGACAGTCCGTTGA
TGAACCCAGGGACAAAAATGCGAGGCTTCCGTCCGAGCGAGGCCCTTCGA
CGGCCTCATCTATGTGTCTAGGGGGATCTCAAGCAACAGCATTACCGCAG
GCACATAGCGAGCGGGTTTTCGACCTAGCCTTCGACAAATCCAACAGGTG
GATGGCCTCAGCCTCTGATGCTGAAGATGTGAAAATTTGGGACGTCGCAG
CTAGTGGAGAAGTGCCGAAACTTTTGCAGAGGCTCCCGCATGCAGCTGAA
GTGCTTCGAGTTGCCTGGAAAGGGCAACCGAGGGATGGAGAGCAATCGAG
GGATGGAGAAAGGGTTGCTGATCTTCCGAACACAACATCATGGTTTGCCA
CTGGTACCGCCGCAGGAGCTGTACGTATATATTGTGTGGCAGCACAGGCG
AAAAGCGAGAGAAATCCGAATAAGAGTCATGACCAAAAGGAAGCTGGTGC
GACCTTTGCCTTAAAAACCGAATTTGCGCATCCCGGCCCGGATCAGCAAA
TTTATGCACTTCTTTGGCTCGAGACTACAGAACTGAATTCTCAGCCTTCA
CTCATGACGGCTGCGGACGACAAAATCTACTGGTGGGACGTGGAGAACCA
GAGCTTGACTAACACGTGGGCCTTCGACTCCGTGGCTCCAACGACAGAGC
CAGGAAATCGGGCGGCCTACGGCGGCGTAAAACGGAACCCTGCAAACATT
TGCTACATATTTGACGCCGTTGCGGGTGAGCTGTACCCCGGGCAGGGCGA
AGACGTGGTGTGTGTGGCCCTGAGCGACGGAAGTGTGCGCGTGCTCGATC
GCCGGTCGGCCCGTACGGTTGCCAGGGTGCAGGGGGCGGAGGGGCACTTG
ACTGCATTGCACCTTGCCACCCATGAGCATCTACTCTTAGCGTGCGGAGG
ACGCGGCGACGTGGTTGCTTTCGACACACGAACATTTTCCGTGCGCGCTG
TCTTGAAGGGCCACGGACGGCCGGTGTTCGGTGCTGCGCTTGTGCCCCCC
GACCTGACAAATTGTGTTGGTAGCGAAGCTATCAATGCGCCAATGGTGAT
GACCTGGTCGACGGACACGACGCTGCGCTTCTTCGACCTGAATACCGGCA
ATTCCGCAGCCCGCCATGTCGTGTGCCACCCACGTTTTCCGATTTTGACT
TGCGCGTTCAGACCCGGGCACAGACAGCTTGTTTTGGGGGGGGGGACGGG
AGTGCCAGAACCACACACGCACCTGCCTGAGGATCTACAGAAGACAGAAA
AATGTTGCGCACATGGCGATGTCAAGCCTCCATCGCTCCTATACTACAAT
TTTCATGGCTAATTGTAAAAAGCAAAGTACAGTGATCACATCATCGGGGG
CCACTTATATCAGTCGATTATTTCATTCAAAACACCGAAAGTTGTCTGTT
TCACCAATTCAATGGGAATCGTGTTGCAGAGATGCTAGTGCTGC back to topprotein sequence of rna4009 >rna4009-protein ID=rna4009-protein|Name=rna4009|organism=Nannochloropsis gaditana|type=polypeptide|length=1086bp
MTMTSEISSPKRMPLSNPKSLDDDLSHLAGPGHGNGKAFLVSLRRDPALA
PLLEPHFDAASFSAHVVGTDNASGATGSPLRTASSTRPSSARSRVEVMVA
QLTEQLTIVEAAIEKHILQHQQELMQGMGDLGELRENCDVLTVRSKELRR
SVKKLSAELLEPYKDTERRTQQLRRIHESNDILKKIARFLVALTRIKESS
TLSNVDLAKEDPESARKGLELRDIAKAAQHLHEVEAILEDPALAELSLVT
AERPYVASLGLGLRRTGMASLKAAMLSMNQADLDPALQVFHNLQHLAPVV
LKCLAAMVAEGAEATRLALDPGALEAVVAPDSSVPRLSSTAPTSSPPAST
ATSQRQGSGEMEAIALRQRQVRIRDHCDRWATVLLQSSLKVWSLQRALHM
KTDAATNQDLLSIVLQSSDFARAADRVMALPSVASSSAAKGRTGSSENNT
HIESAGVRDRARGWAPSGVGALYWLYWLELTAIIRSTTERASRRASSVVA
APSSLAVAPIVNSYPHFLRSLTDALDSLVDSTSKQCHSLLQGAPHGVLSR
SQERGNPAALLALVEALGEGTSSEAQTGLIEGEEEHGPMSERLSPSSLSL
APETAGGSHEERTVGAEALRSLRDLYLGQSLQRLCRPIEQMFPSQEGYQA
AIPSKHDLQALLRVMQTEVVSALAEGGPLLLPHVLQGMVKAVYLFCAKIE
AMINTGEGARKLYPLRGWMLGYEKEHNLQLLQLVALLHHGLQRLPQELAP
AFRVGVSCTKAVAEAVGALETLAVVNLVHPYMVDIATELGGTLAEMHLEN
YAPLPQEQEQGDKGQTMNSRFISTFQAAVEALRKHHLSRFPLQCEFVSRA
FKALAGRLLRLYVSHAALVRPLNEAGKAKITNDMAMLETALYSLHPKLAE
LGAPYLELKAFRELCFFGDEQNPLTVKGLLKERFTANLRPSTLLDALFAR
APLELSSPHILQRCSARTLVEELLSIYYMDKRVLQEGGAAEDEASMENLP
SKRRDPRMAAESAHWQMVQLCLDAYAQRTSATQGELAYIYDVMLNSGGPL
LKAFGDRLGEEEQSAAKHYNNGSSTSISATRFPLNW back to topmRNA from alignment at CM002462.1:617511..620829- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4009 ID=rna4009|Name=rna4009|organism=Nannochloropsis gaditana|type=mRNA|length=3319bp|location=Sequence derived from alignment at CM002462.1:617511..620829- (Nannochloropsis gaditana)
TTAGATTCATGACCATGACTTCTGAAATCTCCTCGCCAAAGCGGATGCCA
TTAAGTAATCCGAAAAGTTTGGACGATGACTTATCTCACCTGGCAGGCCC
TGGACATGGAAATGGAAAGGCTTTTCTTGTGTCATTACGTCGAGATCCAG
CCCTGGCACCATTGCTCGAGCCACATTTTGATGCAGCCTCTTTCTCTGCT
CATGTTGTGGGTACCGACAACGCAAGTGGCGCGACGGGATCTCCCTTGAG
GACAGCGTCGAGTACCCGCCCATCCTCGGCGCGCTCACGGGTTGAAGTCA
TGGTAGCGCAACTGACAGAGCAGCTGACTATTGTCGAAGCAGCCATTGAG
AAGCATATTTTGCAGCATCAACAGGAGCTCATGCAAGGTATGGGAGACCT
GGGTGAACTCCGCGAGAATTGTGATGTGCTGACTGTCCGGAGCAAGGAGT
TGCGTCGATCTGTGAAGAAATTGAGCGCCGAGCTGCTCGAGCCATACAAG
GACACGGAGCGTCGCACCCAGCAACTCAGGCGAATCCATGAGTCGAACGA
TATTTTAAAGAAAATTGCTCGTTTCTTGGTGGCTTTGACTCGGATCAAAG
AAAGCAGTACCCTGTCGAACGTGGATCTCGCAAAAGAGGATCCCGAGTCG
GCGCGGAAAGGGTTAGAGCTCCGTGATATCGCTAAGGCTGCGCAGCACCT
ACACGAGGTGGAAGCGATTTTAGAGGATCCGGCTCTGGCAGAATTGAGTT
TGGTGACGGCGGAGCGCCCATACGTGGCTTCTCTCGGACTTGGCCTGCGT
CGCACTGGCATGGCCAGTCTCAAGGCGGCCATGCTGAGTATGAACCAAGC
AGACCTTGACCCGGCCTTGCAGGTATTTCATAACTTGCAACACCTTGCCC
CTGTGGTACTCAAATGCCTTGCGGCGATGGTGGCGGAGGGGGCCGAGGCC
ACTCGGCTCGCCTTGGACCCGGGGGCTCTGGAGGCGGTCGTCGCCCCGGA
CTCCTCCGTGCCACGCCTTTCCTCAACAGCGCCTACTTCCTCACCGCCCG
CCAGCACAGCCACCTCTCAGCGACAGGGTAGTGGGGAGATGGAAGCTATT
GCCCTCCGACAGCGGCAAGTGCGCATCCGGGACCACTGCGATCGGTGGGC
GACAGTGCTCTTGCAGTCCTCGCTGAAAGTCTGGTCCCTCCAGAGAGCTC
TCCACATGAAGACTGACGCGGCCACGAACCAAGATCTCCTGTCAATAGTG
CTGCAGTCCTCCGACTTCGCACGCGCCGCGGACCGCGTCATGGCATTGCC
GAGCGTCGCATCGTCTTCCGCTGCGAAGGGCAGGACAGGCTCGAGTGAGA
ACAACACCCACATAGAGTCCGCCGGAGTCAGAGACCGAGCGCGCGGATGG
GCACCATCTGGTGTGGGTGCGCTGTACTGGCTGTACTGGTTGGAGCTTAC
GGCCATCATACGCTCCACGACAGAGAGGGCCTCACGACGCGCGTCTTCGG
TCGTTGCGGCGCCTTCCTCATTGGCGGTTGCGCCAATAGTCAATAGCTAC
CCGCATTTTCTGCGGAGTCTGACGGACGCTCTGGACAGTCTGGTGGACAG
CACGTCCAAGCAATGCCATAGCTTGCTACAAGGTGCACCGCATGGAGTTC
TCAGTCGCTCCCAAGAGAGGGGCAATCCGGCCGCGCTTTTGGCGCTTGTG
GAGGCGTTGGGTGAGGGGACGTCGTCGGAGGCTCAAACGGGTTTGATTGA
AGGCGAAGAAGAGCACGGGCCGATGTCTGAGCGTCTGTCGCCTTCCTCGC
TGTCGCTTGCGCCCGAAACGGCCGGTGGCAGCCATGAAGAGCGGACGGTG
GGTGCAGAGGCTCTGAGGAGCCTCCGCGATCTATACTTAGGACAGAGCCT
GCAGCGTCTGTGTCGGCCCATAGAGCAGATGTTCCCCAGCCAGGAGGGCT
ACCAGGCGGCCATTCCCAGCAAACATGACTTGCAGGCGCTCCTTCGCGTC
ATGCAAACCGAGGTTGTAAGCGCCCTTGCGGAGGGAGGGCCGCTCCTCCT
CCCTCACGTGCTGCAGGGCATGGTGAAGGCGGTGTATCTCTTTTGTGCGA
AGATCGAGGCCATGATCAACACCGGAGAGGGCGCACGCAAGCTTTATCCG
CTGCGTGGGTGGATGCTGGGGTACGAGAAAGAGCACAACCTGCAACTCCT
GCAGCTGGTGGCCCTCCTACACCACGGCCTTCAACGCTTACCGCAGGAGC
TGGCGCCTGCCTTCCGCGTCGGAGTCTCTTGCACGAAAGCTGTGGCGGAG
GCCGTGGGGGCCCTGGAGACATTAGCAGTCGTCAACTTGGTACATCCCTA
CATGGTGGACATCGCGACGGAGCTGGGTGGGACGCTGGCGGAGATGCACC
TGGAGAACTATGCGCCTCTACCTCAAGAGCAAGAACAAGGAGACAAAGGC
CAAACTATGAATTCCCGATTTATCAGTACCTTTCAAGCCGCTGTGGAAGC
TTTGCGGAAGCATCACCTTAGCCGTTTCCCTTTACAATGCGAGTTTGTCT
CCCGGGCCTTCAAGGCTCTCGCCGGACGGCTACTGCGCCTTTATGTGAGC
CATGCGGCGCTCGTCCGCCCTCTCAACGAGGCAGGCAAGGCGAAAATAAC
CAACGACATGGCCATGCTGGAGACAGCCCTCTACTCCCTACATCCTAAAC
TCGCAGAGCTGGGTGCCCCTTACCTGGAGCTGAAAGCGTTTCGCGAGCTG
TGTTTCTTCGGAGACGAGCAAAACCCCTTGACAGTGAAGGGCCTATTGAA
AGAGCGCTTCACAGCCAACCTCCGGCCCTCCACCTTGCTGGACGCGCTCT
TCGCCCGCGCTCCTCTCGAGCTCAGCTCACCGCACATTCTCCAACGCTGC
TCGGCACGCACGCTGGTGGAAGAGCTCTTGTCTATCTATTACATGGACAA
GCGAGTCCTCCAGGAGGGCGGTGCTGCGGAAGACGAGGCAAGTATGGAAA
ACCTCCCTAGTAAGCGGCGAGATCCCAGGATGGCAGCAGAAAGTGCTCAT
TGGCAAATGGTCCAGTTGTGTCTGGACGCCTACGCCCAGCGCACGAGTGC
CACGCAGGGTGAGCTTGCCTACATCTACGATGTCATGCTCAACTCTGGTG
GGCCCTTGTTGAAAGCGTTCGGAGACCGGCTGGGAGAAGAGGAGCAAAGT
GCGGCCAAGCATTACAACAATGGCAGCAGCACTAGCATCTCTGCAACACG
ATTCCCATTGAATTGGTGAAACAGACAACTTTCGGTGTTTTGAATGAAAT
AATCGACTGATATAAGTGG back to topCoding sequence (CDS) from alignment at CM002462.1:617511..620829- >rna4009 ID=rna4009|Name=rna4009|organism=Nannochloropsis gaditana|type=CDS|length=3261bp|location=Sequence derived from alignment at CM002462.1:617511..620829- (Nannochloropsis gaditana)
ATGACCATGACTTCTGAAATCTCCTCGCCAAAGCGGATGCCATTAAGTAA
TCCGAAAAGTTTGGACGATGACTTATCTCACCTGGCAGGCCCTGGACATG
GAAATGGAAAGGCTTTTCTTGTGTCATTACGTCGAGATCCAGCCCTGGCA
CCATTGCTCGAGCCACATTTTGATGCAGCCTCTTTCTCTGCTCATGTTGT
GGGTACCGACAACGCAAGTGGCGCGACGGGATCTCCCTTGAGGACAGCGT
CGAGTACCCGCCCATCCTCGGCGCGCTCACGGGTTGAAGTCATGGTAGCG
CAACTGACAGAGCAGCTGACTATTGTCGAAGCAGCCATTGAGAAGCATAT
TTTGCAGCATCAACAGGAGCTCATGCAAGGTATGGGAGACCTGGGTGAAC
TCCGCGAGAATTGTGATGTGCTGACTGTCCGGAGCAAGGAGTTGCGTCGA
TCTGTGAAGAAATTGAGCGCCGAGCTGCTCGAGCCATACAAGGACACGGA
GCGTCGCACCCAGCAACTCAGGCGAATCCATGAGTCGAACGATATTTTAA
AGAAAATTGCTCGTTTCTTGGTGGCTTTGACTCGGATCAAAGAAAGCAGT
ACCCTGTCGAACGTGGATCTCGCAAAAGAGGATCCCGAGTCGGCGCGGAA
AGGGTTAGAGCTCCGTGATATCGCTAAGGCTGCGCAGCACCTACACGAGG
TGGAAGCGATTTTAGAGGATCCGGCTCTGGCAGAATTGAGTTTGGTGACG
GCGGAGCGCCCATACGTGGCTTCTCTCGGACTTGGCCTGCGTCGCACTGG
CATGGCCAGTCTCAAGGCGGCCATGCTGAGTATGAACCAAGCAGACCTTG
ACCCGGCCTTGCAGGTATTTCATAACTTGCAACACCTTGCCCCTGTGGTA
CTCAAATGCCTTGCGGCGATGGTGGCGGAGGGGGCCGAGGCCACTCGGCT
CGCCTTGGACCCGGGGGCTCTGGAGGCGGTCGTCGCCCCGGACTCCTCCG
TGCCACGCCTTTCCTCAACAGCGCCTACTTCCTCACCGCCCGCCAGCACA
GCCACCTCTCAGCGACAGGGTAGTGGGGAGATGGAAGCTATTGCCCTCCG
ACAGCGGCAAGTGCGCATCCGGGACCACTGCGATCGGTGGGCGACAGTGC
TCTTGCAGTCCTCGCTGAAAGTCTGGTCCCTCCAGAGAGCTCTCCACATG
AAGACTGACGCGGCCACGAACCAAGATCTCCTGTCAATAGTGCTGCAGTC
CTCCGACTTCGCACGCGCCGCGGACCGCGTCATGGCATTGCCGAGCGTCG
CATCGTCTTCCGCTGCGAAGGGCAGGACAGGCTCGAGTGAGAACAACACC
CACATAGAGTCCGCCGGAGTCAGAGACCGAGCGCGCGGATGGGCACCATC
TGGTGTGGGTGCGCTGTACTGGCTGTACTGGTTGGAGCTTACGGCCATCA
TACGCTCCACGACAGAGAGGGCCTCACGACGCGCGTCTTCGGTCGTTGCG
GCGCCTTCCTCATTGGCGGTTGCGCCAATAGTCAATAGCTACCCGCATTT
TCTGCGGAGTCTGACGGACGCTCTGGACAGTCTGGTGGACAGCACGTCCA
AGCAATGCCATAGCTTGCTACAAGGTGCACCGCATGGAGTTCTCAGTCGC
TCCCAAGAGAGGGGCAATCCGGCCGCGCTTTTGGCGCTTGTGGAGGCGTT
GGGTGAGGGGACGTCGTCGGAGGCTCAAACGGGTTTGATTGAAGGCGAAG
AAGAGCACGGGCCGATGTCTGAGCGTCTGTCGCCTTCCTCGCTGTCGCTT
GCGCCCGAAACGGCCGGTGGCAGCCATGAAGAGCGGACGGTGGGTGCAGA
GGCTCTGAGGAGCCTCCGCGATCTATACTTAGGACAGAGCCTGCAGCGTC
TGTGTCGGCCCATAGAGCAGATGTTCCCCAGCCAGGAGGGCTACCAGGCG
GCCATTCCCAGCAAACATGACTTGCAGGCGCTCCTTCGCGTCATGCAAAC
CGAGGTTGTAAGCGCCCTTGCGGAGGGAGGGCCGCTCCTCCTCCCTCACG
TGCTGCAGGGCATGGTGAAGGCGGTGTATCTCTTTTGTGCGAAGATCGAG
GCCATGATCAACACCGGAGAGGGCGCACGCAAGCTTTATCCGCTGCGTGG
GTGGATGCTGGGGTACGAGAAAGAGCACAACCTGCAACTCCTGCAGCTGG
TGGCCCTCCTACACCACGGCCTTCAACGCTTACCGCAGGAGCTGGCGCCT
GCCTTCCGCGTCGGAGTCTCTTGCACGAAAGCTGTGGCGGAGGCCGTGGG
GGCCCTGGAGACATTAGCAGTCGTCAACTTGGTACATCCCTACATGGTGG
ACATCGCGACGGAGCTGGGTGGGACGCTGGCGGAGATGCACCTGGAGAAC
TATGCGCCTCTACCTCAAGAGCAAGAACAAGGAGACAAAGGCCAAACTAT
GAATTCCCGATTTATCAGTACCTTTCAAGCCGCTGTGGAAGCTTTGCGGA
AGCATCACCTTAGCCGTTTCCCTTTACAATGCGAGTTTGTCTCCCGGGCC
TTCAAGGCTCTCGCCGGACGGCTACTGCGCCTTTATGTGAGCCATGCGGC
GCTCGTCCGCCCTCTCAACGAGGCAGGCAAGGCGAAAATAACCAACGACA
TGGCCATGCTGGAGACAGCCCTCTACTCCCTACATCCTAAACTCGCAGAG
CTGGGTGCCCCTTACCTGGAGCTGAAAGCGTTTCGCGAGCTGTGTTTCTT
CGGAGACGAGCAAAACCCCTTGACAGTGAAGGGCCTATTGAAAGAGCGCT
TCACAGCCAACCTCCGGCCCTCCACCTTGCTGGACGCGCTCTTCGCCCGC
GCTCCTCTCGAGCTCAGCTCACCGCACATTCTCCAACGCTGCTCGGCACG
CACGCTGGTGGAAGAGCTCTTGTCTATCTATTACATGGACAAGCGAGTCC
TCCAGGAGGGCGGTGCTGCGGAAGACGAGGCAAGTATGGAAAACCTCCCT
AGTAAGCGGCGAGATCCCAGGATGGCAGCAGAAAGTGCTCATTGGCAAAT
GGTCCAGTTGTGTCTGGACGCCTACGCCCAGCGCACGAGTGCCACGCAGG
GTGAGCTTGCCTACATCTACGATGTCATGCTCAACTCTGGTGGGCCCTTG
TTGAAAGCGTTCGGAGACCGGCTGGGAGAAGAGGAGCAAAGTGCGGCCAA
GCATTACAACAATGGCAGCAGCACTAGCATCTCTGCAACACGATTCCCAT
TGAATTGGTGA back to top
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