rna4006, rna4006 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4006
Unique Name	rna4006
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1996
Alignment location	CM002462.1:611122..613232 -

Link to JBrowse

Properties


Property Name	Value
Product	serine threonine-protein kinase ctr1
Orig transcript id	gnl\|cribi\|Naga_100001g112.8146.mrna
Orig protein id	gnl\|cribi\|Naga_100001g112.8146
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:611122..613232 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g112	gene3854	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26635.1	cds3996	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4006	rna4006-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:611122..613232-
coding sequence from alignment at CM002462.1:611122..613232-

mRNA sequence

>rna4006 ID=rna4006|Name=rna4006|organism=Nannochloropsis gaditana|type=mRNA|length=1996bp
CTCACAGGCTGATTATATATCGTTTTAAAGCCAAATGGAGACTTCGACGA
GAAAAGGCTTTCATGAACGCAGTGACGCACGATTTCCCGCTGGAGCGCTT
CATGATTCCATGAACTTGACATCAAATGATTCATTCAGAAGCTCTCAGTT
TGGCAAGGAAGGCGCCTTCAACGAAGGTAAATGAGTAAAACAAATATTGG
TCGAGATATTTTAAAATCTCGCGTTTCATACCGCAATTGGAACCCTGCTC
TGCAATCAAGTTGCAAACTTTGTGACATAAAACACTGTCTGCTAACGCCT
TTTCACTATACTCATACCATCATACGTAGTCAAGAAAGACCCTGGACGCT
GGACGGCTGAGGAACATATGTTGTTTCTTAGGGGTCTGCAATTACACGGT
AAATCATGGAAGAAAATATCCGAGATTGTTACAACGCGGACAGTGGTCCA
AATTCGTACACATGCCCAGAAATACCTTATAAAATTGGAAAAGGCTAGAA
AGGCTGGTCATCAGGGTGTCTTAATGATGGATGGGAAAGGCGTCGATAAC
ACTGAACGTCGAGGCACTTCCAAGAAATCATCTTTGTCCACGGAAACGGT
GAGTTTCACATCTACTTCTGAATCTTCTGTTCTCGAGCAAAAGAGACAGA
AAAATGAGCCAGCGGCTCACCTGCCAGGTCCTGTGCAGCATACTACTGTA
CGCCCTTTTGCACCTGTCACAAGAGCCGCACCTTCAGGCTGCCCCCCAAC
TGCGCCCGCAGGATTCGTGCCATGGATGGTAGGCCCATACGCTTGTGTCC
CGCCAACATACTACAACATGCAAATGATGGCCCATGGATATGACTTTGGT
GCTCCGCTGGTATCGCCATCATCACAATATCGTGCGAGTTTTCCAAATCC
CCTGTCTGCACCCGGAGGAAATTGCCAAGAGCAGGACTTGGGACTAAACG
CACCTCAATCTGTGAGAATGCCCTTGGAGGCTGAAATGGCTGCACAAATT
CATTACCTGGGCATTGACGACGAGGAAACTATCGCGCAAAATCAGCCAAA
TTCCTATAAGCGTCTACGTGTCCCCGCAGGTCTGGCTATGGCGACGCCTG
CGGCGGTTCCTACGGCACAATCCTCTCATTGTAAAGTCTACGTTGCCCCG
CAGCAGTCATGCACCTCGCCTTCTGATATGACTCCGACTCTAACCGCATC
AGCCTTACATCTGCCACCGCAGGGATCTCTTTGCCCGTTCATGACATCAA
ATCCTTTAGACGAGCTCATGCAAAGCCTGTCGCAGGAGAATCTTTCTTCC
TCCTGCTCCTCGACCTCTCCATCTATCGCACCCGAAGTTGATGTACCCAG
CATGCATGACATACTCATTTGGGACCTAAATGGGAAACATAGCCGCCCTT
CTTCCCTTAGCTCCTGGGACGAGGAGGGCTTCGATGGAGTCTCGACCTCA
TCTTCCCCTGCAAGCATTGACAATCACGTTGTTTGCCAACCTCCGGATTT
GAGCGAGCTTCAGTATGCGAAAGCTGCATGAAGCGTTCCTTGTGGTATGG
TAAGGTCAACTTTTCGATTTTTTGTTGACATGCCTCCTGCTCTCGTTCTA
GATGCTTATCGTGTTTGGCAGATATGAGCGCCGAGGCACTGAGTTACATT
GTCCTTGTTCCACACTTACAAAATCCACACCGATGTCTTCGTATGCCTGT
GATCATATGTGGAATTTACATATTACGACTTTTATTTTGGCGGGAAAAAG
GAATGCAAGGTGTGCAAAGAAAGGCATGTACTCACGTCAAAATGAATACT
GAATCCGTTGCGCACGTGTGGATCCATGGAAACATTCCTTTTTTGATTTA
TGGTTTTCTTGGGCACCTTTCAGATAGTTTGCAGAGTTCTAAATAATTGA
GTTAATTGATCTCTGGGAGTGAAAGTTTAGTCAGAAAAAAATCATTTAAT
GACAAGAGTTATTACCCTTATTTGTGCTCAACTTCTTAGTCCAGCT

protein sequence of rna4006

>rna4006-protein ID=rna4006-protein|Name=rna4006|organism=Nannochloropsis gaditana|type=polypeptide|length=507bp
MASTVRAASKGSIVTMRKKRESLSVIPSKAPPTQERLDKTQGIQDSDYRI
RSATAGPPDVIVRDKATGAVALDVFDYEQLENVEFLASGAFSHVFSAIYK
GKNVVVKLLREQYKESQVTLKQMRFEQTLLSQLDHSNIVEFIGTGVYNGV
PFTVLERLDETLNQRMGGEVRLTMLESLTYAMAIGEALVYLHDAAITGHV
TLHRDLKPDNLAFGESGSVKLIDFGLARSVPRGASINEVYEMTGETGSLR
YMAPEVALGMLYNAKADVYSLALITWQMVQGTKPFQGMSRKDFFHHVVHR
HFRPPVDPKWPPALSSIIVQAWDPDQLKRPTAREFVDALGSIVRGLSRHR
RNSTGTSSSLSRVRNMFNMIKERAEDYVVGAAGTVNGVHHDRRRSSACGG
ASGEKVGFKEGEEHRGQEEPQQKPQEETQPPSDAKENHKTTTLPPPIPEP
ERQPAAEPCQVLQPIPQDEEERREMVTPKEVAVGPPDAIGKIPGENDTGG
HKRRNSH

mRNA from alignment at CM002462.1:611122..613232-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4006 ID=rna4006|Name=rna4006|organism=Nannochloropsis gaditana|type=mRNA|length=2111bp|location=Sequence derived from alignment at CM002462.1:611122..613232- (Nannochloropsis gaditana)
AAGCTGATCTATTTTACTTTCTGAACAAGCAGGGACAGTAGTTTGAATGA
ATGGCCCTCTCATGCGAAGCCTTGTTTTTTAAATACGCAACATACAGGCT
GGATCTACTGCCTTTTGGGATTTCTTAGGTTGAGGCGAAAAGTGAAAAGG
TGATTGACATTGACTGAAGGGAGACGAACAAACTCCGCACCGGCCACGAC
TATGGCGTCTACAGTCAGAGCGGCTAGCAAGGGAAGTATTGTAACCATGC
GTAAGAAAAGGGAATCGTTGAGTGTGATTCCGAGTAAAGCACCTCCTACT
CAAGAAAGGCTTGACAAGACCCAAGGCATCCAGGATTCGGATTACCGCAT
TCGCAGCGCCACAGCAGGGCCACCAGACGTGATAGTCCGAGATAAGGCAA
CAGGCGCCGTAGCCCTGGATGTCTTCGACTATGAACAGCTTGAAAACGTT
GAATTTCTTGCGTCGGGGGCATTTTCTCATGTCTTTTCGGCTATCTACAA
GGGCAAAAACGTGGTTGTGAAATTGCTACGAGAGCAGTACAAGGAGAGCC
AAGTGACGCTGAAACAAATGCGCTTCGAACAGACACTCCTCAGCCAGTTG
GATCATTCTAATATTGTTGAATTTATCGGTACAGGGGTGTATAATGGTGT
GCCTTTTACCGTGCTGGAGCGGCTCGATGAAACGCTCAATCAGCGCATGG
GGGGCGAGGTGCGCCTTACCATGCTCGAATCCCTAACATATGCAATGGCC
ATCGGGGAGGCGTTAGTCTACCTCCATGATGCGGCCATAACCGGTCACGT
TACCCTTCACCGAGACTTGAAGCCCGACAACCTGGCTTTCGGGGAGTCGG
GCAGTGTCAAACTCATCGATTTTGGCCTGGCTCGCTCAGTGCCCCGGGGG
GCCTCCATCAATGAGGTCTATGAAATGACGGGGGAGACCGGTAGTCTTCG
CTATATGGCGCCCGAGGTTGCCCTCGGTATGCTCTACAATGCCAAGGCAG
ATGTGTACAGTCTCGCTCTCATAACGTGGCAGATGGTGCAAGGAACAAAG
CCATTCCAAGGCATGAGCCGCAAGGACTTCTTCCATCATGTGGTGCACCG
GCATTTCCGGCCCCCAGTCGACCCTAAATGGCCTCCCGCGCTCAGTAGCA
TCATCGTGCAGGCCTGGGATCCCGACCAACTCAAGCGCCCGACAGCCCGG
GAATTCGTGGATGCCCTTGGAAGCATCGTTCGCGGCCTAAGTCGCCATCG
TCGGAACTCCACTGGAACTTCCTCTTCCCTCTCGCGCGTTCGCAACATGT
TCAACATGATCAAGGAACGGGCGGAAGACTATGTTGTGGGCGCTGCAGGA
ACGGTGAATGGTGTGCACCATGACCGGCGCCGGTCCAGCGCCTGTGGTGG
GGCATCGGGGGAGAAAGTGGGTTTCAAGGAAGGCGAAGAGCATAGAGGGC
AAGAGGAACCACAGCAGAAGCCTCAAGAAGAGACACAGCCGCCTTCAGAT
GCCAAGGAAAACCACAAGACCACTACGCTCCCGCCACCAATACCCGAACC
CGAGCGACAACCGGCCGCAGAGCCCTGCCAAGTACTTCAACCCATTCCGC
AAGATGAGGAAGAGCGGAGGGAGATGGTAACCCCGAAGGAGGTGGCGGTT
GGGCCCCCGGATGCGATCGGCAAAATTCCAGGAGAGAACGACACAGGCGG
TCATAAACGGCGAAACAGTCATTAATTTGCGCGATCGTCCTAAACGGCTC
GTCGAGATAAGTAATCCATCAACAAATCCAGTCTCGCATACACCTCATCA
CACCATTTGAGATTTCGGTAGTAGGATTATTACTTCGGGCATCAAAATTC
TTGCTATAGATGAAAAAATCTGAATAGAGGGGACTCTTTCGATTTTATAT
TATATATTCTCGTAGCTTATAGGTCAGAAAATCTCTACTTACATATGCCT
GTCAATGCCTGTGTACAGTCGCCATGTGAAAGAAATAAATAGTCATTCCC
GCAATGAAGGATGAGAAGCTACATCGTATCGAGACGTAGATTTTTATCAT
CTCATGGTGAAAGATTAACAAGAAACGTTCTTTTCCATTGCCGTGAGAGA
CGTTCGCCAGT

Coding sequence (CDS) from alignment at CM002462.1:611122..613232-

>rna4006 ID=rna4006|Name=rna4006|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at CM002462.1:611122..613232- (Nannochloropsis gaditana)
ATGGCGTCTACAGTCAGAGCGGCTAGCAAGGGAAGTATTGTAACCATGCG
TAAGAAAAGGGAATCGTTGAGTGTGATTCCGAGTAAAGCACCTCCTACTC
AAGAAAGGCTTGACAAGACCCAAGGCATCCAGGATTCGGATTACCGCATT
CGCAGCGCCACAGCAGGGCCACCAGACGTGATAGTCCGAGATAAGGCAAC
AGGCGCCGTAGCCCTGGATGTCTTCGACTATGAACAGCTTGAAAACGTTG
AATTTCTTGCGTCGGGGGCATTTTCTCATGTCTTTTCGGCTATCTACAAG
GGCAAAAACGTGGTTGTGAAATTGCTACGAGAGCAGTACAAGGAGAGCCA
AGTGACGCTGAAACAAATGCGCTTCGAACAGACACTCCTCAGCCAGTTGG
ATCATTCTAATATTGTTGAATTTATCGGTACAGGGGTGTATAATGGTGTG
CCTTTTACCGTGCTGGAGCGGCTCGATGAAACGCTCAATCAGCGCATGGG
GGGCGAGGTGCGCCTTACCATGCTCGAATCCCTAACATATGCAATGGCCA
TCGGGGAGGCGTTAGTCTACCTCCATGATGCGGCCATAACCGGTCACGTT
ACCCTTCACCGAGACTTGAAGCCCGACAACCTGGCTTTCGGGGAGTCGGG
CAGTGTCAAACTCATCGATTTTGGCCTGGCTCGCTCAGTGCCCCGGGGGG
CCTCCATCAATGAGGTCTATGAAATGACGGGGGAGACCGGTAGTCTTCGC
TATATGGCGCCCGAGGTTGCCCTCGGTATGCTCTACAATGCCAAGGCAGA
TGTGTACAGTCTCGCTCTCATAACGTGGCAGATGGTGCAAGGAACAAAGC
CATTCCAAGGCATGAGCCGCAAGGACTTCTTCCATCATGTGGTGCACCGG
CATTTCCGGCCCCCAGTCGACCCTAAATGGCCTCCCGCGCTCAGTAGCAT
CATCGTGCAGGCCTGGGATCCCGACCAACTCAAGCGCCCGACAGCCCGGG
AATTCGTGGATGCCCTTGGAAGCATCGTTCGCGGCCTAAGTCGCCATCGT
CGGAACTCCACTGGAACTTCCTCTTCCCTCTCGCGCGTTCGCAACATGTT
CAACATGATCAAGGAACGGGCGGAAGACTATGTTGTGGGCGCTGCAGGAA
CGGTGAATGGTGTGCACCATGACCGGCGCCGGTCCAGCGCCTGTGGTGGG
GCATCGGGGGAGAAAGTGGGTTTCAAGGAAGGCGAAGAGCATAGAGGGCA
AGAGGAACCACAGCAGAAGCCTCAAGAAGAGACACAGCCGCCTTCAGATG
CCAAGGAAAACCACAAGACCACTACGCTCCCGCCACCAATACCCGAACCC
GAGCGACAACCGGCCGCAGAGCCCTGCCAAGTACTTCAACCCATTCCGCA
AGATGAGGAAGAGCGGAGGGAGATGGTAACCCCGAAGGAGGTGGCGGTTG
GGCCCCCGGATGCGATCGGCAAAATTCCAGGAGAGAACGACACAGGCGGT
CATAAACGGCGAAACAGTCATTAA

Synonyms

Publications